Rh7CG013100

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004105
Physical Location & Seq
Forward (+)
999254 .. 1001244
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG013100.1

Sequence Viewer

Length: 441 bp
ATGGCTTCAAAGTGTCTGTTTCTGATGGTGTTAGGTTTAGTGGGCCTTGTGGGCTCTGCGGCCGAGTTTTCCGGAGGCGGACTAGCAGGGCTGGTCCATGGTGGCGGTGATGGTGATCCAAGTGATTCAATGCCATGCGTGAAGAAACTGATTCCGTGCCAACCTTATTTGCATGCACCGGAGAAGGTGCCGGTATCGTGCTGCTTGCCGTTGAAGCAGATGGTTTCCGACGACACGAAATGCCTGTGTGGACTGTTTAACAATGTTGATATGTTGAAGAAGCTTAACGTTACTCAGGATGAGGCCTTGAAGCTTCCCAAGGCTTGTGGAGCCAATGCTGACATTTCTATCTGCAAAAAAGGTACCTATTTGCTTTTTTCTTTTTTTCATTTATGTGTTAATTGTAATGAAATTCATGGAAATTATGAGTCTTTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

146

Amino Acids

15.53

Weight (kDa)

6.38

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 44 - 118 2.2e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 47 - 114 2.8e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 2 cut(s) 187, 362
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 3 cut(s) 59, 78, 105
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 5 cut(s) 9, 129, 214, 277, 310
AluBI AGCT 2 cut(s) 283, 313
AluI AGCT 2 cut(s) 283, 313
AlwI GGATC 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 3 cut(s) 43, 60, 303
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 411
Asp718I GGTACC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 43, 94
AsuHPI GGTGA 2 cut(s) 119, 125
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 2 cut(s) 187, 362
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 188
BccI CCATC 3 cut(s) 19, 104, 214
BceAI ACGGC 1 cut(s) 193
BfaI CTAG 1 cut(s) 83
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 2 cut(s) 60, 202
BlsI GCNGC 2 cut(s) 61, 203
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 43, 94
BmiI GGNNCC 3 cut(s) 189, 331, 364
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 97, 318
BsaWI WCCGGW 2 cut(s) 71, 178
Bse118I RCCGGY 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 97, 318
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 114
BseMII CTCAG 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 45, 62, 305
BshNI GGYRCC 2 cut(s) 187, 362
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 72, 179, 191
BsnI GGCC 3 cut(s) 45, 62, 305
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 3 cut(s) 59, 78, 105
BspANI GGCC 3 cut(s) 45, 62, 305
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 189, 331, 364
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 187, 362
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 97, 318
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 2 cut(s) 97, 318
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 174, 206
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 3 cut(s) 51, 214, 329
BstNSI RCATGY 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 188
BstZI CGGCCG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 45, 62, 305
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 174, 206
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 43, 94
Csp6I GTAC 1 cut(s) 363
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 4 cut(s) 98, 135, 173, 416
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
EciI GGCGGA 1 cut(s) 93
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 97, 318
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 97, 318
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 97, 318
FaeI CATG 4 cut(s) 101, 138, 176, 419
FaiI YATR 9 cut(s) 99, 136, 174, 272, 394, 417, 426, 437, 439
FatI CATG 4 cut(s) 97, 134, 172, 415
Fnu4HI GCNGC 2 cut(s) 60, 202
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 60, 202
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 60, 202
HaeIII GGCC 3 cut(s) 45, 62, 305
HapII CCGG 3 cut(s) 72, 179, 191
Hin1II CATG 4 cut(s) 101, 138, 176, 419
HindIII AAGCTT 2 cut(s) 281, 311
HinfI GANTC 3 cut(s) 125, 151, 428
HpaII CCGG 3 cut(s) 72, 179, 191
HphI GGTGA 2 cut(s) 119, 125
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 24, 229
Hpy188III TCNNGA 2 cut(s) 72, 296
Hpy8I GTNNAC 1 cut(s) 251
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 172, 176, 354
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 214, 329
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 4 cut(s) 101, 138, 176, 419
Kpn2I TCCGGA 1 cut(s) 71
KpnI GGTACC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 7 cut(s) 72, 77, 85, 192, 204, 257, 281
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 154, 289
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 3 cut(s) 400, 411, 421
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 2 cut(s) 68, 295
MroI TCCGGA 1 cut(s) 71
MseI TTAA 3 cut(s) 258, 285, 399
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 3 cut(s) 72, 179, 191
MwoI GCNNNNNNNGC 3 cut(s) 51, 214, 329
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 115
NlaIII CATG 4 cut(s) 101, 138, 176, 419
NlaIV GGNNCC 3 cut(s) 189, 331, 364
NmeAIII GCCGAG 1 cut(s) 88
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PceI AGGCCT 1 cut(s) 305
PfeI GAWTC 2 cut(s) 125, 151
PkrI GCNGC 2 cut(s) 61, 203
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp1406I AACGTT 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 189, 331, 364
PspPI GGNCC 2 cut(s) 43, 94
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 3 cut(s) 258, 285, 399
SatI GCNGC 2 cut(s) 60, 202
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 43, 94
SchI GAGTC 1 cut(s) 437
SduI GDGCHC 1 cut(s) 56
SetI ASST 8 cut(s) 37, 166, 189, 285, 291, 315, 364, 368
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 393
SphI GCATGC 1 cut(s) 176
Sse9I AATT 3 cut(s) 400, 411, 421
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 3 cut(s) 59, 78, 105
SspMI CTAG 1 cut(s) 83
StuI AGGCCT 1 cut(s) 305
StyI CCWWGG 2 cut(s) 97, 318
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 291
TasI AATT 3 cut(s) 400, 411, 421
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 125, 151
Tru1I TTAA 3 cut(s) 258, 285, 399
Tru9I TTAA 3 cut(s) 258, 285, 399
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 377, 404, 423
TspGWI ACGGA 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 411
XceI RCATGY 1 cut(s) 176
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.