Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Reverse (-)

27649695 .. 27650471

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGATTAACAAATTTCTGGCCGTAGTCGTAGCCGTCGTGGTCCTCTACTCCGTCGAAGCGACGGCACAAGGAGGAAACCCTCAGTTGACGGCTTGTCTGCAGAAACTGCTGCCGTGTCAGCCGTACATACATTCGCTGAATCCGCCTCCTCCGCCATCGTGTTGCGGGCCGATGAAAGAGATCGTAGAGAAAGACGCACCGTGTTTATGCATCGCTTTTAACAATCCGGAGGTGCTCAAAGCCCTAAACCTCACCAAAGAGAACGCTCTCCTACTTCCCAAGGCATGTGGAGTTAATCCTGACGTTTCACTCTGCTCCAAAATAGCCACTCCTTCGCCTATTGCGTCGCCGGGATCAACCAATGGAACCTCTTCCGCTTCAACTATCAGCTTCAATCGATTTAGCTTTCTGTCTGCTTTTGTGGCAATGATCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

147

Amino Acids

15.51

Weight (kDa)

7.5

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 106	3e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 103	1.9e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	4 cut(s)	146, 155, 168, 378
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	384, 397
AhdI	GACNNNNNGTC	1 cut(s)	96
AluBI	AGCT	2 cut(s)	393, 408
AluI	AGCT	2 cut(s)	393, 408
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	2 cut(s)	21, 170
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	43, 170
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	6 cut(s)	8, 20, 81, 100, 108, 109
BcnI	CCSGG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	43, 170
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	2 cut(s)	23, 172
BshVI	ATCGAT	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	230, 353
BsnI	GGCC	2 cut(s)	23, 172
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	183, 356, 432
BspACI	CCGC	4 cut(s)	146, 155, 168, 378
BspANI	GGCC	2 cut(s)	23, 172
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	400
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	105
BspPI	GGATC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	183, 356, 432
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	186, 359, 435
BstMBI	GATC	3 cut(s)	183, 356, 432
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 121, 145, 154, 425
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	23, 172
BsuTUI	ATCGAT	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	170
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	43, 170
ClaI	ATCGAT	1 cut(s)	400
CseI	GACGC	2 cut(s)	206, 336
Csp6I	GTAC	1 cut(s)	127
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	9 cut(s)	23, 35, 95, 124, 172, 245, 329, 393, 408
CviKI_1	RGCY	9 cut(s)	23, 35, 95, 124, 172, 245, 329, 393, 408
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	3 cut(s)	185, 358, 434
DpnII	GATC	3 cut(s)	183, 356, 432
DriI	GACNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	2 cut(s)	135, 144
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	291
FaiI	YATR	3 cut(s)	131, 211, 289
FatI	CATG	1 cut(s)	287
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	23, 172
HapII	CCGG	2 cut(s)	230, 353
HgaI	GACGC	2 cut(s)	206, 336
Hin1II	CATG	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	230, 353
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	2 cut(s)	230, 302
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	4 cut(s)	41, 59, 67, 352
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	103, 213
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 121, 145, 154, 425
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	183, 356, 432
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	5, 243, 315, 366
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	306
MalI	GATC	3 cut(s)	185, 358, 434
MboI	GATC	3 cut(s)	183, 356, 432
MboII	GAAGA	3 cut(s)	366, 427, 430
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	14
MnlI	CCTC	8 cut(s)	56, 68, 93, 159, 162, 226, 263, 382
Mph1103I	ATGCAT	1 cut(s)	215
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	3 cut(s)	9, 222, 297
MspI	CCGG	2 cut(s)	230, 353
MspR9I	CCNGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	109, 121, 145, 154, 425
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	183, 356, 432
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	215
NspI	RCATGY	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 344
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	43, 170
PstI	CTGCAG	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	9, 222, 297
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	3 cut(s)	183, 356, 432
Sau96I	GGNCC	2 cut(s)	43, 170
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	6 cut(s)	237, 255, 309, 374, 395, 410
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	43
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	4 cut(s)	146, 155, 168, 378
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	57, 400
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	9, 222, 297
Tru9I	TTAA	3 cut(s)	9, 222, 297
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	373
Zsp2I	ATGCAT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.