Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Reverse (-)

35848745 .. 35849935

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTTCCATCTCAAAACACTTGCTTCTCTTCTCGTTTCTGTCCCTTTTCGAGTTGTTCGGATTCTCCCAAGGCCGGCAGCTTACTGCATTGCCGGATCAGAAGGCCGCTGCTGGTGGTACGCAATGCCTGCAGAAACTGATTCCTTGTCAGGCGTATTTGAACGCGCCGGAGAAGGCTCCCCCTACGTGCTGCTCGCCGCTAAAGAAGTTGGTTTCGGATGATGCCGAGTGCCTTTGCACCCTCTTCAGCAATAAGGACATGTTGAGGAGCCTTAACATAACGCAGGCTGATGCCTTGAAGCTTTCCAAGGCTTGTGGTGCCAATGCTGACATTTCAGCATGCAAAAAGGATGCAGCGTCACCAGGCACTTCACCTTCTAACAGTAGTTCTTCCTCAGGCAACTCTCCCGGAGGTACAGAGAGTGCAGCTTACGCACCGTCAGCGCCCGGCAGATCGGGCATTGCTGCCGTCTTCATGGCTTTGATCATTGCAGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

168

Amino Acids

17.17

Weight (kDa)

8.43

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	34 - 115	8.7e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	43 - 111	3.7e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccII	CGCG	1 cut(s)	167
AciI	CCGC	2 cut(s)	108, 200
AclWI	GGATC	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	121, 418
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	163, 301
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	3 cut(s)	82, 304, 431
AluI	AGCT	3 cut(s)	82, 304, 431
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	2 cut(s)	73, 105
ApeKI	GCWGC	7 cut(s)	79, 110, 192, 356, 428, 467, 494
AspLEI	GCGC	2 cut(s)	169, 448
AsuC2I	CCSGG	2 cut(s)	411, 450
AsuHPI	GGTGA	2 cut(s)	354, 366
AxyI	CCTNAGG	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	466
BbvI	GCAGC	6 cut(s)	91, 97, 179, 368, 440, 454
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	2 cut(s)	411, 450
BfmI	CTRYAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	449
BisI	GCNGC	9 cut(s)	80, 108, 111, 193, 200, 357, 429, 468, 495
BlsI	GCNGC	9 cut(s)	81, 109, 112, 194, 201, 358, 430, 469, 496
Bme1390I	CCNGG	3 cut(s)	366, 411, 450
BmiI	GGNNCC	3 cut(s)	180, 272, 322
BmrFI	CCNGG	3 cut(s)	366, 411, 450
BmsI	GCATC	3 cut(s)	214, 283, 343
BpiI	GAAGAC	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	411, 450
BsaAI	YACGTR	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	70, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	4 cut(s)	89, 131, 462, 489
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	70, 309
BseGI	GGATG	2 cut(s)	226, 358
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	4 cut(s)	89, 131, 462, 489
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	6 cut(s)	91, 97, 179, 368, 440, 454
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	75, 107
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	5 cut(s)	76, 95, 170, 411, 450
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	75, 107
Bsp143I	GATC	3 cut(s)	97, 455, 486
BspACI	CCGC	2 cut(s)	108, 200
BspANI	GGCC	2 cut(s)	75, 107
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	180, 272, 322
BspMAI	CTGCAG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	4 cut(s)	89, 131, 462, 489
BsrFI	RCCGGY	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	70, 309
BssMI	GATC	3 cut(s)	97, 455, 486
BssT1I	CCWWGG	2 cut(s)	70, 309
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	386, 441
Bst6I	CTCTTC	2 cut(s)	35, 251
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	5 cut(s)	77, 131, 197, 288, 343
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	226, 358
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	169, 448
BstKTI	GATC	3 cut(s)	100, 458, 489
BstMBI	GATC	3 cut(s)	97, 455, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 320, 434, 443, 459
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	265, 345
BstSCI	CCNGG	3 cut(s)	364, 409, 448
BstSFI	CTRYAG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	6 cut(s)	91, 97, 179, 368, 440, 454
BstV2I	GAAGAC	1 cut(s)	466
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	75, 107
BtsCI	GGATG	2 cut(s)	226, 358
Cac8I	GCNNGC	5 cut(s)	77, 131, 197, 288, 343
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	2 cut(s)	169, 448
Cfr10I	RCCGGY	1 cut(s)	75
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	120, 417
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	3 cut(s)	262, 342, 478
CviQI	GTAC	2 cut(s)	120, 417
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	3 cut(s)	99, 457, 488
DpnII	GATC	3 cut(s)	97, 455, 486
Eam1104I	CTCTTC	2 cut(s)	35, 251
EarI	CTCTTC	2 cut(s)	35, 251
Eco130I	CCWWGG	2 cut(s)	70, 309
Eco57I	CTGAAG	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	70, 309
ErhI	CCWWGG	2 cut(s)	70, 309
FaeI	CATG	3 cut(s)	265, 345, 481
FaiI	YATR	4 cut(s)	263, 281, 343, 479
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	261, 341, 477
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	9 cut(s)	80, 108, 111, 193, 200, 357, 429, 468, 495
FokI	GGATG	2 cut(s)	233, 365
Fsp4HI	GCNGC	9 cut(s)	80, 108, 111, 193, 200, 357, 429, 468, 495
GlaI	GCGC	2 cut(s)	168, 447
GluI	GCNGC	9 cut(s)	80, 108, 111, 193, 200, 357, 429, 468, 495
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	75, 107
HapII	CCGG	5 cut(s)	76, 95, 170, 411, 450
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	2 cut(s)	169, 448
Hin1II	CATG	3 cut(s)	265, 345, 481
Hin6I	GCGC	2 cut(s)	167, 446
HinP1I	GCGC	2 cut(s)	167, 446
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	63, 142
HpaII	CCGG	5 cut(s)	76, 95, 170, 411, 450
HphI	GGTGA	2 cut(s)	354, 366
Hpy188I	TCNGA	3 cut(s)	62, 102, 220
HpyAV	CCTTC	3 cut(s)	97, 169, 387
HpyCH4III	ACNGT	2 cut(s)	386, 441
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	7 cut(s)	89, 133, 240, 345, 356, 428, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 320, 434, 443, 459
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	265, 345, 481
HspAI	GCGC	2 cut(s)	167, 446
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	97, 455, 486
LmnI	GCTCC	2 cut(s)	184, 270
Lsp1109I	GCAGC	6 cut(s)	91, 97, 179, 368, 440, 454
LweI	GCATC	3 cut(s)	214, 283, 343
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	3 cut(s)	99, 457, 488
MboI	GATC	3 cut(s)	97, 455, 486
MboII	GAAGA	4 cut(s)	22, 238, 384, 466
MnlI	CCTC	4 cut(s)	254, 261, 406, 407
MroNI	GCCGGC	1 cut(s)	75
MseI	TTAA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	5 cut(s)	76, 95, 170, 411, 450
MspR9I	CCNGG	3 cut(s)	366, 411, 450
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	130, 320, 434, 443, 459
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	411, 450
NdeII	GATC	3 cut(s)	97, 455, 486
NgoMIV	GCCGGC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	265, 345, 481
NlaIV	GGNNCC	3 cut(s)	180, 272, 322
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	2 cut(s)	265, 345
PaeI	GCATGC	1 cut(s)	345
PciI	ACATGT	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	63, 142
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	9 cut(s)	81, 109, 112, 194, 201, 358, 430, 469, 496
Ppu21I	YACGTR	1 cut(s)	189
PscI	ACATGT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	180, 272, 322
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	121, 418
RsaNI	GTAC	2 cut(s)	120, 417
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	9 cut(s)	80, 108, 111, 193, 200, 357, 429, 468, 495
Sau3AI	GATC	3 cut(s)	97, 455, 486
ScrFI	CCNGG	3 cut(s)	366, 411, 450
SetI	ASST	6 cut(s)	84, 191, 306, 379, 418, 433
SfaNI	GCATC	3 cut(s)	214, 283, 343
SfcI	CTRYAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	345
SsiI	CCGC	2 cut(s)	108, 200
StyD4I	CCNGG	3 cut(s)	364, 409, 448
StyI	CCWWGG	2 cut(s)	70, 309
TaaI	ACNGT	2 cut(s)	386, 441
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	2 cut(s)	110, 202
TfiI	GAWTC	2 cut(s)	63, 142
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	7 cut(s)	79, 110, 192, 356, 428, 467, 494
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	466
XceI	RCATGY	2 cut(s)	265, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.