Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002999.1

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Forward (+)

140526 .. 143545

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002999.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggggtctactaccagatggttattgctcttggtctatcagaaggggtttgttcggggcttgttggtggttctggctgggatggtgagaggcggtggtcatgctaacaggtccggcgatcgaaccttgatgacgacccactggtctgactcgatggcgcgggcggagcaacttggctgttacgtacgacggggatgtgagcctaggaggactggaccggaccaggctaatgggccttgggttgacctttgctttggtgagttaccgtctatagaagagatgagcataactttgcagatcttatgcgaaaaggtgaacccaatgatgtacccaagaagcttttgcaaggggtctattcagtccatggcatgcatgcagaaactcatgccttgtcaatcatattttaagaaactggacaatgttcctgatacgtgttgtacgccgatgaagaatatgctatcggagacggcggatgataagaactgcatttgcgacgtctttggcaaccccatcatgttgaagagcctgaatataacccaggatgataccatgaagcttgcaaaggcttgtggcttcaaggctgacatttcaaaatgcgacaagaaggaaaaggatactgcatcgccatcatcatcaccatccgaatccaccccacgtccatcaccatcagcttctaatgcagcctctagtttcggcaaatctggtttcacagcctctttcattgcaactctaattttttcagcagcattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

250

Amino Acids

27.3

Weight (kDa)

8.66

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AatII	GACGTC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	160
AciI	CCGC	4 cut(s)	93, 160, 164, 470
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	3 cut(s)	186, 329, 439
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	520, 577, 591
AjiI	CACGTC	1 cut(s)	656
AjnI	CCWGG	2 cut(s)	222, 537
AluBI	AGCT	3 cut(s)	339, 556, 671
AluI	AGCT	3 cut(s)	339, 556, 671
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	680, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspA2I	CCTAGG	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	4 cut(s)	111, 215, 220, 233
AsuHPI	GGTGA	5 cut(s)	97, 269, 325, 627, 654
AvaII	GGWCC	3 cut(s)	111, 215, 220
AvrII	CCTAGG	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	692
BccI	CCATC	8 cut(s)	12, 76, 148, 518, 634, 646, 667, 673
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	2 cut(s)	224, 539
BciVI	GTATCC	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	204, 687
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	607
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	2 cut(s)	681, 744
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	2 cut(s)	682, 745
Bme1390I	CCNGG	2 cut(s)	224, 539
Bme18I	GGWCC	3 cut(s)	111, 215, 220
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	4 cut(s)	111, 215, 220, 233
BmrFI	CCNGG	2 cut(s)	224, 539
BmsI	GCATC	1 cut(s)	629
BsaAI	YACGTR	2 cut(s)	184, 432
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	203, 236, 363, 537
BsaWI	WCCGGW	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	146, 217, 417
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	2 cut(s)	224, 539
BseDI	CCNNGG	4 cut(s)	203, 236, 363, 537
BseGI	GGATG	5 cut(s)	87, 200, 478, 547, 638
BseMI	GCAATG	1 cut(s)	720
BseNI	ACTGG	3 cut(s)	146, 217, 417
BseXI	GCAGC	1 cut(s)	692
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	114, 218
BsiWI	CGTACG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	118, 297
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	4 cut(s)	93, 160, 164, 470
BspANI	GGCC	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	3 cut(s)	146, 217, 417
BssECI	CCNNGG	4 cut(s)	203, 236, 363, 537
BssMI	GATC	2 cut(s)	118, 297
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	3 cut(s)	203, 236, 363
Bst2UI	CCWGG	2 cut(s)	224, 539
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	270, 515
BstACI	GRCGYC	1 cut(s)	495
BstBAI	YACGTR	2 cut(s)	184, 432
BstC8I	GCNNGC	4 cut(s)	162, 370, 374, 558
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	5 cut(s)	87, 200, 478, 547, 638
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	121, 300
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	118, 297
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 677
BstNI	CCWGG	2 cut(s)	224, 539
BstNSI	RCATGY	2 cut(s)	372, 376
BstSCI	CCNGG	2 cut(s)	222, 537
BstSFI	CTRYAG	1 cut(s)	270
BstSNI	TACGTA	1 cut(s)	184
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	606
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	5 cut(s)	87, 200, 478, 547, 638
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	4 cut(s)	162, 370, 374, 558
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	4 cut(s)	111, 215, 220, 233
Csp6I	GTAC	3 cut(s)	185, 328, 438
CviAII	CATG	7 cut(s)	101, 364, 369, 373, 385, 514, 550
CviQI	GTAC	3 cut(s)	185, 328, 438
DpnI	GATC	2 cut(s)	120, 299
DpnII	GATC	2 cut(s)	118, 297
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	270, 515
EarI	CTCTTC	2 cut(s)	270, 515
EciI	GGCGGA	2 cut(s)	179, 485
Eco105I	TACGTA	1 cut(s)	184
Eco130I	CCWWGG	3 cut(s)	203, 236, 363
Eco47I	GGWCC	3 cut(s)	111, 215, 220
EcoRII	CCWGG	2 cut(s)	222, 537
EcoT14I	CCWWGG	3 cut(s)	203, 236, 363
EcoT22I	ATGCAT	1 cut(s)	374
ErhI	CCWWGG	3 cut(s)	203, 236, 363
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	7 cut(s)	104, 367, 372, 376, 388, 517, 553
FatI	CATG	7 cut(s)	100, 363, 368, 372, 384, 513, 549
FauI	CCCGC	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	681, 744
FokI	GGATG	5 cut(s)	94, 207, 485, 554, 625
Fsp4HI	GCNGC	2 cut(s)	681, 744
FspBI	CTAG	2 cut(s)	204, 687
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	681, 744
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	114, 218
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	7 cut(s)	104, 367, 372, 376, 388, 517, 553
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	2 cut(s)	337, 554
HinfI	GANTC	2 cut(s)	149, 644
HpaII	CCGG	2 cut(s)	114, 218
HphI	GGTGA	5 cut(s)	97, 269, 325, 627, 654
Hpy166II	GTNNAC	3 cut(s)	9, 244, 316
Hpy188I	TCNGA	4 cut(s)	42, 148, 463, 643
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	3 cut(s)	9, 244, 316
Hpy99I	CGWCG	2 cut(s)	192, 497
HpyAV	CCTTC	2 cut(s)	37, 598
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	4 cut(s)	183, 431, 495, 655
HpyCH4V	TGCA	9 cut(s)	295, 345, 372, 376, 486, 560, 620, 680, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 677
HpySE526I	ACGT	4 cut(s)	183, 431, 495, 655
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	7 cut(s)	104, 367, 372, 376, 388, 517, 553
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	118, 297
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	692
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	2 cut(s)	204, 687
MaeII	ACGT	4 cut(s)	183, 431, 495, 655
MaeIII	GTNAC	2 cut(s)	179, 261
MalI	GATC	2 cut(s)	120, 299
MboI	GATC	2 cut(s)	118, 297
MboII	GAAGA	3 cut(s)	287, 460, 532
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	83, 201, 694, 724
Mph1103I	ATGCAT	1 cut(s)	374
MseI	TTAA	2 cut(s)	405, 751
MspI	CCGG	2 cut(s)	114, 218
MspR9I	CCNGG	2 cut(s)	224, 539
MvaI	CCWGG	2 cut(s)	224, 539
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	166, 677
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	2 cut(s)	118, 297
NlaIII	CATG	7 cut(s)	104, 367, 372, 376, 388, 517, 553
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	2 cut(s)	372, 376
PaeI	GCATGC	2 cut(s)	372, 376
PciSI	GCTCTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	644
Pfl23II	CGTACG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	682, 745
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	184, 432
Psp6I	CCWGG	2 cut(s)	222, 537
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	222, 537
PspLI	CGTACG	1 cut(s)	184
PspPI	GGNCC	4 cut(s)	111, 215, 220, 233
PsuI	RGATCY	1 cut(s)	297
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	186, 329, 439
RsaNI	GTAC	3 cut(s)	185, 328, 438
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	405, 751
SatI	GCNGC	2 cut(s)	681, 744
Sau3AI	GATC	2 cut(s)	118, 297
Sau96I	GGNCC	4 cut(s)	111, 215, 220, 233
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	224, 539
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	3 cut(s)	111, 215, 220
SnaBI	TACGTA	1 cut(s)	184
SphI	GCATGC	2 cut(s)	372, 376
Sse9I	AATT	1 cut(s)	732
SsiI	CCGC	4 cut(s)	93, 160, 164, 470
SspMI	CTAG	2 cut(s)	204, 687
StyD4I	CCNGG	2 cut(s)	222, 537
StyI	CCWWGG	3 cut(s)	203, 236, 363
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	4 cut(s)	186, 434, 498, 658
TaqI	TCGA	2 cut(s)	121, 152
TasI	AATT	1 cut(s)	732
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	2 cut(s)	405, 751
Tru9I	TTAA	2 cut(s)	405, 751
TscAI	CASTG	1 cut(s)	146
TseI	GCWGC	2 cut(s)	680, 743
TspDTI	ATGAA	3 cut(s)	461, 566, 709
TspRI	CASTG	1 cut(s)	146
VpaK11BI	GGWCC	3 cut(s)	111, 215, 220
XceI	RCATGY	2 cut(s)	372, 376
XmaJI	CCTAGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	204, 687
ZraI	GACGTC	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.