Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Reverse (-)

23489291 .. 23491711

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGAATAAAAAAACGGTTACTCAATGGGATTTCACCAAACCAGTCTCACAAACCAAACCATTTGAACCAACAAAAACACACACAAACTCTCTCAAAAAAAAAAAAACAATGGCTTCGATCTCAAAACACTTGCTTCTCTTCTCGTTTCTGTCCCTTTTCGAGTTGTTCGGATTCTCCCAAGGCCGGCAGCTTACTGCATTGCCGGATCAGAAGGCCGCTGCTGGTGGTACGCAATGCCTGCAGAAACTGATTCCTTGTCAGGCGTATTTGAAGGCGCCGGAGAAGGCTCCCTCGACGTGCTGCTCGCCGCTCAAGAAGTTGGTTTCGGATGATGCGGAGTGCCTTTGCACCCTCTTCAGCAACAAGGACATATTGAGCAGCCTTAACATCACGCAGGCTGATGCCTTGAAGCTTTCCAAGGCTTGTGGTGCCAATGCTGACATTTCAAAATGCAAAAAGGATGCAGCATCACCAGGCACTTCACCTTCTAGCAATGGTTCCTCCTCAGGCAACTCTCCCGGCGGTACAGAGAGTGCAGCTTACGCACCGTCCGCGCTAGGCGGATCGGGCTTTGCTGCCGTCTTCTTGGCCTTTATCATTGCAGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

205

Amino Acids

21.42

Weight (kDa)

9.18

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	277, 431
AccBSI	CCGCTC	1 cut(s)	313
AccII	CGCG	1 cut(s)	557
AciI	CCGC	6 cut(s)	219, 311, 338, 525, 555, 564
AclWI	GGATC	2 cut(s)	216, 574
AcuI	CTGAAG	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	2 cut(s)	232, 529
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	68, 274, 412, 450
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	3 cut(s)	193, 415, 542
AluI	AGCT	3 cut(s)	193, 415, 542
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	216, 574
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	3 cut(s)	184, 216, 591
ApeKI	GCWGC	8 cut(s)	190, 221, 303, 381, 467, 539, 578, 605
AspLEI	GCGC	2 cut(s)	280, 559
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	28, 465, 477
AxyI	CCTNAGG	1 cut(s)	508
BanI	GGYRCC	2 cut(s)	277, 431
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	7 cut(s)	202, 208, 290, 393, 479, 551, 565
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	492, 560
BfmI	CTRYAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	477, 522
BmgBI	CACGTC	1 cut(s)	300
BmiI	GGNNCC	4 cut(s)	279, 291, 433, 502
BmrFI	CCNGG	2 cut(s)	477, 522
BmsI	GCATC	4 cut(s)	325, 394, 454, 479
BpiI	GAAGAC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	181, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	508
Bse3DI	GCAATG	4 cut(s)	200, 242, 502, 600
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	181, 420
BseGI	GGATG	2 cut(s)	337, 469
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	4 cut(s)	200, 242, 502, 600
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	7 cut(s)	202, 208, 290, 393, 479, 551, 565
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	186, 218, 593
BshNI	GGYRCC	2 cut(s)	277, 431
BsiSI	CCGG	4 cut(s)	187, 206, 281, 522
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	186, 218, 593
Bsp143I	GATC	3 cut(s)	120, 208, 566
BspACI	CCGC	6 cut(s)	219, 311, 338, 525, 555, 564
BspANI	GGCC	3 cut(s)	186, 218, 593
BspCNI	CTCAG	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	4 cut(s)	279, 291, 433, 502
BspMAI	CTGCAG	1 cut(s)	246
BspPI	GGATC	2 cut(s)	216, 574
BspT107I	GGYRCC	2 cut(s)	277, 431
BsrBI	CCGCTC	1 cut(s)	313
BsrDI	GCAATG	4 cut(s)	200, 242, 502, 600
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	181, 420
BssMI	GATC	3 cut(s)	120, 208, 566
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	181, 420
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	19, 552
Bst6I	CTCTTC	2 cut(s)	146, 362
BstACI	GRCGYC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	4 cut(s)	188, 242, 308, 399
BstDEI	CTNAG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	337, 469
BstFNI	CGCG	1 cut(s)	557
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	280, 559
BstKTI	GATC	3 cut(s)	123, 211, 569
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	3 cut(s)	120, 208, 566
BstMWI	GCNNNNNNNGC	5 cut(s)	241, 431, 545, 554, 570
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	475, 520
BstSFI	CTRYAG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	7 cut(s)	202, 208, 290, 393, 479, 551, 565
BstV2I	GAAGAC	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	508
BsuRI	GGCC	3 cut(s)	186, 218, 593
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	337, 469
Cac8I	GCNNGC	4 cut(s)	188, 242, 308, 399
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	2 cut(s)	280, 559
Cfr10I	RCCGGY	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	231, 528
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviQI	GTAC	2 cut(s)	231, 528
DdeI	CTNAG	1 cut(s)	508
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	3 cut(s)	122, 210, 568
DpnII	GATC	3 cut(s)	120, 208, 566
Eam1104I	CTCTTC	2 cut(s)	146, 362
EarI	CTCTTC	2 cut(s)	146, 362
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	2 cut(s)	181, 420
Eco57I	CTGAAG	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	181, 420
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	181, 420
FaiI	YATR	1 cut(s)	374
FaqI	GGGAC	1 cut(s)	139
FokI	GGATG	2 cut(s)	344, 476
FspBI	CTAG	2 cut(s)	492, 560
GlaI	GCGC	2 cut(s)	279, 558
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	186, 218, 593
HapII	CCGG	4 cut(s)	187, 206, 281, 522
HhaI	GCGC	2 cut(s)	280, 559
Hin1I	GRCGYC	1 cut(s)	278
Hin6I	GCGC	2 cut(s)	278, 557
HinP1I	GCGC	2 cut(s)	278, 557
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	2 cut(s)	174, 253
HpaII	CCGG	4 cut(s)	187, 206, 281, 522
HphI	GGTGA	3 cut(s)	28, 465, 477
Hpy188I	TCNGA	3 cut(s)	173, 213, 331
Hpy188III	TCNNGA	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	208, 268, 280, 498
HpyCH4III	ACNGT	2 cut(s)	19, 552
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	7 cut(s)	200, 244, 351, 456, 467, 539, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	241, 431, 545, 554, 570
HpyF3I	CTNAG	1 cut(s)	508
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	278
HspAI	GCGC	2 cut(s)	278, 557
KasI	GGCGCC	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	186
KroNI	GCCGGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	120, 208, 566
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	7 cut(s)	202, 208, 290, 393, 479, 551, 565
LweI	GCATC	4 cut(s)	325, 394, 454, 479
MaeI	CTAG	2 cut(s)	492, 560
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	122, 210, 568
MbiI	CCGCTC	1 cut(s)	313
MboI	GATC	3 cut(s)	120, 208, 566
MboII	GAAGA	3 cut(s)	133, 349, 577
Mly113I	GGCGCC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	304, 365, 514, 517
MroNI	GCCGGC	1 cut(s)	186
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	4 cut(s)	187, 206, 281, 522
MspR9I	CCNGG	2 cut(s)	477, 522
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	5 cut(s)	241, 431, 545, 554, 570
NaeI	GCCGGC	1 cut(s)	188
NarI	GGCGCC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	3 cut(s)	120, 208, 566
NgoMIV	GCCGGC	1 cut(s)	186
NlaIV	GGNNCC	4 cut(s)	279, 291, 433, 502
PdiI	GCCGGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	174, 253
PluTI	GGCGCC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	4 cut(s)	279, 291, 433, 502
PstI	CTGCAG	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	232, 529
RsaNI	GTAC	2 cut(s)	231, 528
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	120, 208, 566
ScrFI	CCNGG	2 cut(s)	477, 522
SetI	ASST	5 cut(s)	195, 302, 417, 490, 544
SfaNI	GCATC	4 cut(s)	325, 394, 454, 479
SfcI	CTRYAG	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SsiI	CCGC	6 cut(s)	219, 311, 338, 525, 555, 564
SspDI	GGCGCC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	492, 560
StyD4I	CCNGG	2 cut(s)	475, 520
StyI	CCWWGG	2 cut(s)	181, 420
TaaI	ACNGT	2 cut(s)	19, 552
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	119, 162, 296
TauI	GCSGC	2 cut(s)	221, 313
TfiI	GAWTC	2 cut(s)	174, 253
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	8 cut(s)	190, 221, 303, 381, 467, 539, 578, 605
XspI	CTAG	2 cut(s)	492, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.