Rroxscaffold_1G00048540

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004105
Physical Location & Seq
Reverse (-)
68589828 .. 68590295
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048540.1

Sequence Viewer

Length: 468 bp
ATGGCTAATTCAAAGCACTATTTGTTTCTGATTATCTTGGCTTCATGGGCAGTTGTCGGTTTAGGGTCTATTCAGTCCATGGCATGCATGCAGAAACTCATGCCTTGTCAATCATATTTTAAGAAACTGGACAATGTTCCTGATACGTGTTGTACGCCGATGAAGAATATGCTATCGGAAACGGCGGATGATAAGAACTGCATTTGCGGCGTATTTGGCAACCCCATCATGTTGAAGAACATGAATATAACCCAGGATGATACCATGAAGCTTACAAAGGCTTGTGGCTTGAAGGCTGACATTTCAAAATGCGACAAGAAGGAAAAGGATACTGCATCGCCATCGTCATCACCAACCGAATCCACCCGAAGTCCATCACCATCAGCTTCCAATGCAGCCTCTCGTTTCAGCAAATCTGGTTTCACAGCCTCTTTCATTGCAACTCTAATTTTTTCAGCAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

155

Amino Acids

16.72

Weight (kDa)

8.79

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 17 - 104 2e-11 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 185, 207
AfaI GTAC 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 4 cut(s) 12, 235, 292, 306
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 2 cut(s) 271, 386
AluI AGCT 2 cut(s) 271, 386
ApeKI GCWGC 2 cut(s) 395, 458
AsuHPI GGTGA 2 cut(s) 342, 369
BbvI GCAGC 1 cut(s) 407
BccI CCATC 4 cut(s) 233, 349, 382, 388
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 322
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 3 cut(s) 208, 396, 459
BlsI GCNGC 3 cut(s) 209, 397, 460
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 78, 252
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 78, 252
BseGI GGATG 2 cut(s) 193, 262
BseMI GCAATG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 407
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 2 cut(s) 185, 207
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 78, 252
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 85, 89
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 193, 262
BstMWI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 392
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 87, 91
BstSCI CCNGG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 407
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 193, 262
Cac8I GCNNGC 2 cut(s) 85, 89
Csp6I GTAC 1 cut(s) 153
CviAII CATG 8 cut(s) 45, 79, 84, 88, 100, 229, 241, 265
CviJI RGCY 9 cut(s) 5, 41, 271, 281, 288, 296, 386, 398, 428
CviKI_1 RGCY 9 cut(s) 5, 41, 271, 281, 288, 296, 386, 398, 428
CviQI GTAC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 8 cut(s) 48, 82, 87, 91, 103, 232, 244, 268
FatI CATG 8 cut(s) 44, 78, 83, 87, 99, 228, 240, 264
Fnu4HI GCNGC 3 cut(s) 208, 396, 459
FokI GGATG 2 cut(s) 200, 269
Fsp4HI GCNGC 3 cut(s) 208, 396, 459
GluI GCNGC 3 cut(s) 208, 396, 459
Hin1II CATG 8 cut(s) 48, 82, 87, 91, 103, 232, 244, 268
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 1 cut(s) 359
HphI GGTGA 2 cut(s) 342, 369
Hpy188I TCNGA 2 cut(s) 30, 178
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 286, 313
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 6 cut(s) 87, 91, 201, 335, 395, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 392
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 8 cut(s) 48, 82, 87, 91, 103, 232, 244, 268
LpnPI CCDG 5 cut(s) 113, 153, 239, 266, 402
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 1 cut(s) 344
MaeII ACGT 1 cut(s) 146
MboII GAAGA 2 cut(s) 175, 247
MluCI AATT 2 cut(s) 7, 447
MnlI CCTC 2 cut(s) 409, 439
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 2 cut(s) 120, 466
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 392
NcoI CCATGG 1 cut(s) 78
NlaIII CATG 8 cut(s) 48, 82, 87, 91, 103, 232, 244, 268
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 2 cut(s) 87, 91
PaeI GCATGC 2 cut(s) 87, 91
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 3 cut(s) 209, 397, 460
Ppu21I YACGTR 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 120, 466
SatI GCNGC 3 cut(s) 208, 396, 459
ScrFI CCNGG 1 cut(s) 254
SetI ASST 3 cut(s) 149, 273, 388
SfaNI GCATC 1 cut(s) 344
SphI GCATGC 2 cut(s) 87, 91
Sse9I AATT 2 cut(s) 7, 447
SsiI CCGC 2 cut(s) 185, 207
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 1 cut(s) 149
TasI AATT 2 cut(s) 7, 447
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 120, 466
Tru9I TTAA 2 cut(s) 120, 466
TseI GCWGC 2 cut(s) 395, 458
TspDTI ATGAA 5 cut(s) 33, 176, 257, 281, 424
XceI RCATGY 2 cut(s) 87, 91
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.