Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Forward (+)

6294160 .. 6295372

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGCTGTTAGATTCGCCGTCGCCGTCGTTCTTGTATTTTGCTACGTTACGTCGTCTAATGCTCAGATGACTTCACCACCGAGCGGCGGTGCAGGAGGAGACGCACACTCACTGCCGTGTATTCAGAAACTGATGCCGTGTCAGCCGTATCTTCACTTGGCGACTCCGCCGCCGGCGACGTGTTGCATGCCGTTGAATGAGATCGTAGCCAAAGACGCCACGTGTCTCTGCGCTGTCTTTAACAACGTTGATATGCTCAAATCGCTTAACCTCACTAAAGAAAACGCTCTCGATCTCCCCAAGGCTTGTGGCGCCAAAGCTGACGTGTCACTATGCAAAACCAGCGCCGGTACTAATTCGTCTTCAACACCGCCGGCAACCCCGAAAACTCCTCCGGCATCTTCCACCAGTACCGGAACAGGAAGCGGATCAACCGGAAATGCAGCTCCTTCGACGGCCAAGCCAACAAGCTCAGCCCCGGCCATCAACTTCGGTGGACTTAGCTTTGCATCGGCTGTCGTGGCAACACTCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

180

Amino Acids

18.07

Weight (kDa)

8.08

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 113	4.1e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	42 - 109	4.5e-07	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	6 cut(s)	87, 90, 170, 173, 374, 429
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	2 cut(s)	459, 483
AcvI	CACGTG	1 cut(s)	225
AcyI	GRCGYC	2 cut(s)	219, 315
AfaI	GTAC	2 cut(s)	355, 415
AfiI	CCNNNNNNNGG	2 cut(s)	86, 89
AflIII	ACRYGT	3 cut(s)	182, 224, 327
AgsI	TTSAA	2 cut(s)	199, 369
AjiI	CACGTC	2 cut(s)	183, 328
AleI	CACNNNNGTG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	323, 449, 474, 507
AluI	AGCT	4 cut(s)	323, 449, 474, 507
Alw26I	GTCTC	2 cut(s)	96, 233
AlwI	GGATC	1 cut(s)	439
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	459, 483
ApeKI	GCWGC	1 cut(s)	446
AspLEI	GCGC	3 cut(s)	236, 317, 350
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	7 cut(s)	5, 11, 103, 124, 133, 178, 474
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	2 cut(s)	96, 233
BfoI	RGCGCY	2 cut(s)	318, 351
BisI	GCNGC	3 cut(s)	88, 173, 447
BlpI	GCTNAGC	1 cut(s)	475
BlsI	GCNGC	3 cut(s)	89, 174, 448
Bme1390I	CCNGG	1 cut(s)	482
BmgBI	CACGTC	2 cut(s)	183, 328
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	3 cut(s)	126, 410, 521
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	482
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	219, 315
BsaJI	CCNNGG	2 cut(s)	303, 480
BsaWI	WCCGGW	2 cut(s)	416, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 89
Bse118I	RCCGGY	3 cut(s)	175, 350, 376
Bse1I	ACTGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	303, 480
BseLI	CCNNNNNNNGG	2 cut(s)	86, 89
BseMII	CTCAG	2 cut(s)	80, 489
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	114, 384
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	461, 485
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	7 cut(s)	176, 351, 377, 398, 417, 438, 482
BslI	CCNNNNNNNGG	2 cut(s)	86, 89
BsmAI	GTCTC	2 cut(s)	96, 233
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	461, 485
Bsp143I	GATC	3 cut(s)	204, 295, 431
Bsp1720I	GCTNAGC	1 cut(s)	475
BspACI	CCGC	6 cut(s)	87, 90, 170, 173, 374, 429
BspANI	GGCC	2 cut(s)	461, 485
BspCNI	CTCAG	2 cut(s)	79, 488
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	3 cut(s)	175, 350, 376
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	3 cut(s)	175, 350, 376
BssECI	CCNNGG	2 cut(s)	303, 480
BssMI	GATC	3 cut(s)	204, 295, 431
BssNI	GRCGYC	2 cut(s)	219, 315
BssT1I	CCWWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	2 cut(s)	219, 315
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	177, 191, 378
BstDEI	CTNAG	3 cut(s)	66, 475, 503
BstH2I	RGCGCY	2 cut(s)	318, 351
BstHHI	GCGC	3 cut(s)	236, 317, 350
BstKTI	GATC	3 cut(s)	207, 298, 434
BstMAI	GTCTC	2 cut(s)	96, 233
BstMBI	GATC	3 cut(s)	204, 295, 431
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 218, 265, 314, 345, 524
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	461, 485
BtrI	CACGTC	2 cut(s)	183, 328
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	177, 191, 378
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	3 cut(s)	236, 317, 350
Cfr10I	RCCGGY	3 cut(s)	175, 350, 376
CseI	GACGC	2 cut(s)	113, 227
Csp6I	GTAC	2 cut(s)	354, 414
CspCI	CAANNNNNGTGG	4 cut(s)	292, 327, 478, 513
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	2 cut(s)	354, 414
DdeI	CTNAG	3 cut(s)	66, 475, 503
DinI	GGCGCC	1 cut(s)	316
DpnI	GATC	3 cut(s)	206, 297, 433
DpnII	GATC	3 cut(s)	204, 295, 431
EaeI	YGGCCR	2 cut(s)	459, 483
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	303
Eco72I	CACGTG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	191, 257, 337
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	88, 173, 447
Fsp4HI	GCNGC	3 cut(s)	88, 173, 447
GlaI	GCGC	3 cut(s)	235, 316, 349
GluI	GCNGC	3 cut(s)	88, 173, 447
HaeII	RGCGCY	2 cut(s)	318, 351
HaeIII	GGCC	2 cut(s)	461, 485
HapII	CCGG	7 cut(s)	176, 351, 377, 398, 417, 438, 482
HgaI	GACGC	2 cut(s)	113, 227
HhaI	GCGC	3 cut(s)	236, 317, 350
Hin1I	GRCGYC	2 cut(s)	219, 315
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	3 cut(s)	234, 315, 348
HinP1I	GCGC	3 cut(s)	234, 315, 348
HinfI	GANTC	2 cut(s)	15, 166
HpaII	CCGG	7 cut(s)	176, 351, 377, 398, 417, 438, 482
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	3 cut(s)	69, 129, 542
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	5 cut(s)	26, 32, 58, 184, 460
HpyAV	CCTTC	1 cut(s)	462
HpyCH4IV	ACGT	6 cut(s)	48, 53, 182, 224, 249, 327
HpyCH4V	TGCA	5 cut(s)	95, 189, 339, 446, 512
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 218, 265, 314, 345, 524
HpyF3I	CTNAG	3 cut(s)	66, 475, 503
HpySE526I	ACGT	6 cut(s)	48, 53, 182, 224, 249, 327
Hsp92I	GRCGYC	2 cut(s)	219, 315
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	3 cut(s)	234, 315, 348
KasI	GGCGCC	1 cut(s)	314
KroI	GCCGGC	2 cut(s)	175, 376
KroNI	GCCGGC	2 cut(s)	177, 378
Kzo9I	GATC	3 cut(s)	204, 295, 431
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	3 cut(s)	126, 410, 521
MaeII	ACGT	6 cut(s)	48, 53, 182, 224, 249, 327
MaeIII	GTNAC	2 cut(s)	49, 330
MalI	GATC	3 cut(s)	206, 297, 433
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	3 cut(s)	204, 295, 431
MboII	GAAGA	5 cut(s)	146, 357, 396, 526, 529
MluCI	AATT	1 cut(s)	358
Mly113I	GGCGCC	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	92, 284, 405
MreI	CGCCGGCG	1 cut(s)	175
MroNI	GCCGGC	2 cut(s)	175, 376
MseI	TTAA	2 cut(s)	243, 270
MslI	CAYNNNNRTG	1 cut(s)	118
MspI	CCGG	7 cut(s)	176, 351, 377, 398, 417, 438, 482
MspR9I	CCNGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	6 cut(s)	145, 218, 265, 314, 345, 524
NaeI	GCCGGC	2 cut(s)	177, 378
NarI	GGCGCC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	482
NdeII	GATC	3 cut(s)	204, 295, 431
NgoMIV	GCCGGC	2 cut(s)	175, 376
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	193
OliI	CACNNNNGTG	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdiI	GCCGGC	2 cut(s)	177, 378
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	89, 174, 448
PleI	GAGTC	1 cut(s)	160
PluTI	GGCGCC	1 cut(s)	318
PmaCI	CACGTG	1 cut(s)	225
PmlI	CACGTG	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	355, 415
RsaNI	GTAC	2 cut(s)	354, 414
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	243, 270
SatI	GCNGC	3 cut(s)	88, 173, 447
Sau3AI	GATC	3 cut(s)	204, 295, 431
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	482
SfaNI	GCATC	3 cut(s)	126, 410, 521
SfoI	GGCGCC	1 cut(s)	316
SgrAI	CRCCGGYG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	118
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	6 cut(s)	87, 90, 170, 173, 374, 429
SspDI	GGCGCC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	6 cut(s)	51, 56, 185, 227, 252, 330
TaqI	TCGA	2 cut(s)	294, 455
TasI	AATT	1 cut(s)	358
TauI	GCSGC	2 cut(s)	90, 175
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	243, 270
Tru9I	TTAA	2 cut(s)	243, 270
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	330
TspRI	CASTG	1 cut(s)	120
XceI	RCATGY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.