Rh7AG013300

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004105
Physical Location & Seq
Forward (+)
879367 .. 881343
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG013300.1

Sequence Viewer

Length: 504 bp
ATGGCTTCAAAGTGTCTGTTTCTGATGGTGTTAGGTTTAGTGGGCCTTGTGGGCTCTGCGGCAGAGTTTTCCGGAGGCGGACTAGCAGGACTGGTGATCCATGGTGGCGGTGATGGTGATCCAAGTGATTCAATGCCATGCGTGAAGAAACTGATCCCGTGCCAACCTTATTTGCATGCACCGGAGAAGGTGCCGGTATCGTGCTGCTTGCCGTTGAAGCAGATGGTTTCCGACGACACGAAATGCCTGTGTGGACTGTTTAACAACGTTGATATGTTGAAGAAGCTTAACGTTACTCAGGATGAGGCCTTGAAGCTTCCCAAGGCTTGTGGAGCCAATGCTGACATTTCTATCTGCAAAAAAGGTACCTATTTGCTTTTTTCTTTTTTCATTTATGTGCTAATTGTAATGAAATTCATGGAAATTATGAGTCTTTTATATAGAGTACAAATCTATGTTCTAGGCACACTGATCCTGATAATATATATGTCATTTTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

167

Amino Acids

18.16

Weight (kDa)

8.04

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 45 - 119 2.2e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 48 - 115 4.1e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 2 cut(s) 190, 365
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 3 cut(s) 59, 78, 108
AclI AACGTT 2 cut(s) 267, 291
AclWI GGATC 4 cut(s) 91, 113, 148, 466
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 2 cut(s) 367, 447
AgsI TTSAA 5 cut(s) 9, 132, 217, 280, 313
AluBI AGCT 2 cut(s) 286, 316
AluI AGCT 2 cut(s) 286, 316
AlwI GGATC 4 cut(s) 91, 113, 148, 466
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 2 cut(s) 43, 306
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 106, 122, 128
BanI GGYRCC 2 cut(s) 190, 365
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 19, 107, 217
BceAI ACGGC 1 cut(s) 196
BfaI CTAG 2 cut(s) 83, 461
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 2 cut(s) 60, 205
BlsI GCNGC 2 cut(s) 61, 206
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 3 cut(s) 192, 334, 367
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 100, 321
BsaWI WCCGGW 2 cut(s) 71, 181
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 100, 321
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 117
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 2 cut(s) 45, 308
BshNI GGYRCC 2 cut(s) 190, 365
BsiSI CCGG 3 cut(s) 72, 182, 194
BsnI GGCC 2 cut(s) 45, 308
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 4 cut(s) 96, 118, 153, 471
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 3 cut(s) 59, 78, 108
BspANI GGCC 2 cut(s) 45, 308
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 192, 334, 367
BspPI GGATC 4 cut(s) 91, 113, 148, 466
BspT107I GGYRCC 2 cut(s) 190, 365
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 100, 321
BssMI GATC 4 cut(s) 96, 118, 153, 471
BssT1I CCWWGG 2 cut(s) 100, 321
Bst4CI ACNGT 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 177, 209
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 4 cut(s) 99, 121, 156, 474
BstMBI GATC 4 cut(s) 96, 118, 153, 471
BstMWI GCNNNNNNNGC 3 cut(s) 51, 217, 332
BstNSI RCATGY 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 45, 308
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 2 cut(s) 177, 209
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 366, 446
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 4 cut(s) 101, 138, 176, 418
CviJI RGCY 8 cut(s) 5, 45, 54, 286, 308, 316, 326, 335
CviKI_1 RGCY 8 cut(s) 5, 45, 54, 286, 308, 316, 326, 335
CviQI GTAC 2 cut(s) 366, 446
DdeI CTNAG 1 cut(s) 297
DpnI GATC 4 cut(s) 98, 120, 155, 473
DpnII GATC 4 cut(s) 96, 118, 153, 471
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 100, 321
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 100, 321
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 100, 321
FaeI CATG 4 cut(s) 104, 141, 179, 421
FatI CATG 4 cut(s) 100, 137, 175, 417
Fnu4HI GCNGC 2 cut(s) 60, 205
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 60, 205
FspBI CTAG 2 cut(s) 83, 461
GluI GCNGC 2 cut(s) 60, 205
HaeIII GGCC 2 cut(s) 45, 308
HapII CCGG 3 cut(s) 72, 182, 194
Hin1II CATG 4 cut(s) 104, 141, 179, 421
HindIII AAGCTT 2 cut(s) 284, 314
HinfI GANTC 2 cut(s) 128, 430
HpaII CCGG 3 cut(s) 72, 182, 194
HphI GGTGA 3 cut(s) 106, 122, 128
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 24, 232
Hpy188III TCNNGA 3 cut(s) 72, 299, 475
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4IV ACGT 2 cut(s) 267, 291
HpyCH4V TGCA 3 cut(s) 175, 179, 357
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 217, 332
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 2 cut(s) 267, 291
Hsp92II CATG 4 cut(s) 104, 141, 179, 421
Kpn2I TCCGGA 1 cut(s) 71
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 4 cut(s) 96, 118, 153, 471
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 8 cut(s) 72, 77, 85, 195, 207, 260, 284, 488
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 2 cut(s) 83, 461
MaeII ACGT 2 cut(s) 267, 291
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 98, 120, 155, 473
MboI GATC 4 cut(s) 96, 118, 153, 471
MboII GAAGA 2 cut(s) 157, 292
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 3 cut(s) 402, 413, 423
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 2 cut(s) 68, 298
MroI TCCGGA 1 cut(s) 71
MseI TTAA 2 cut(s) 261, 288
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 3 cut(s) 72, 182, 194
MwoI GCNNNNNNNGC 3 cut(s) 51, 217, 332
NcoI CCATGG 1 cut(s) 100
NdeII GATC 4 cut(s) 96, 118, 153, 471
NlaIII CATG 4 cut(s) 104, 141, 179, 421
NlaIV GGNNCC 3 cut(s) 192, 334, 367
NspI RCATGY 1 cut(s) 179
PaeI GCATGC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 308
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 61, 206
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
Psp1406I AACGTT 2 cut(s) 267, 291
PspN4I GGNNCC 3 cut(s) 192, 334, 367
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 2 cut(s) 367, 447
RsaNI GTAC 2 cut(s) 366, 446
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 261, 288
SatI GCNGC 2 cut(s) 60, 205
Sau3AI GATC 4 cut(s) 96, 118, 153, 471
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 439
SduI GDGCHC 1 cut(s) 56
SetI ASST 9 cut(s) 37, 169, 192, 270, 288, 294, 318, 367, 371
SmiMI CAYNNNNRTG 1 cut(s) 395
SphI GCATGC 1 cut(s) 179
Sse9I AATT 3 cut(s) 402, 413, 423
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 3 cut(s) 59, 78, 108
SspMI CTAG 2 cut(s) 83, 461
StuI AGGCCT 1 cut(s) 308
StyI CCWWGG 2 cut(s) 100, 321
TaaI ACNGT 1 cut(s) 258
TaiI ACGT 2 cut(s) 270, 294
TasI AATT 3 cut(s) 402, 413, 423
TatI WGTACW 1 cut(s) 445
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 261, 288
Tru9I TTAA 2 cut(s) 261, 288
TscAI CASTG 1 cut(s) 474
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 379, 406, 425
TspRI CASTG 1 cut(s) 474
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 179
XspI CTAG 2 cut(s) 83, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.