FvH4_3g18850

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004105
Physical Location & Seq
Forward (+)
12105244 .. 12106389
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18850.t1

Sequence Viewer

Length: 492 bp
ATGGCTAATTCACAGCAGTATTTGTTTCTGATCATCTTGGCTTCATGGGCGATTGTAAGTTTAGGCCTGGGTCTTGACTCCATGGGACCATTTGCATGCATGCAGAAAATGACCCCTTGTCAACAGTACTTCAAGAAACTGGACAATGTGCCTGATACATGTTGTGACCCGATGAAGAACATGCTATCGGAGAAATCGGACGATAGGAAATGCATTTGCGGCGCCTTGAGCAACCCCCTGGTGCTGAAGAACTTGAACGTGACTCAGGATGAGGTCATGGATCTTGCAAATGCTTGTGGCTTGAAGGCTGACGTTTCAAAATGCGACGGTAAGTCAAAGGACACTAAGGATAATGCATCTCCATCTTCTTCACCAGAAACCGGCAAGTCCTCCCCAAGTCCATCACCAGCTCCTAATGCAGCCTCTTGTTTCGGCAAATCTGGTTTTGCAGCCTCGTTCATTGCAGCTCTAATTTTTTCAGCAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

164

Amino Acids

17.24

Weight (kDa)

6.18

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 33 - 108 1.2e-10 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AciI CCGC 1 cut(s) 219
AclWI GGATC 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 4 cut(s) 133, 256, 304, 318
AhdI GACNNNNNGTC 2 cut(s) 117, 331
AjnI CCWGG 2 cut(s) 66, 237
AluBI AGCT 2 cut(s) 410, 467
AluI AGCT 2 cut(s) 410, 467
AlwI GGATC 1 cut(s) 288
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 4 cut(s) 419, 449, 464, 482
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 363, 396
AvaII GGWCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 431, 461, 476
BccI CCATC 2 cut(s) 370, 409
BciT130I CCWGG 2 cut(s) 68, 239
BclI TGATCA 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 5 cut(s) 220, 420, 450, 465, 483
BlsI GCNGC 5 cut(s) 221, 421, 451, 466, 484
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 68, 239
Bme18I GGWCC 1 cut(s) 86
BmeRI GACNNNNNGTC 2 cut(s) 117, 331
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 87, 223
BmrFI CCNGG 2 cut(s) 68, 239
BmsI GCATC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 67, 81, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 2 cut(s) 68, 239
BseDI CCNNGG 3 cut(s) 67, 81, 237
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 3 cut(s) 431, 461, 476
BshFI GGCC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 221
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 30, 280
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 87, 223
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 67, 81, 237
BssMI GATC 2 cut(s) 30, 280
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 68, 239
Bst4CI ACNGT 2 cut(s) 126, 329
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 97, 101
BstDEI CTNAG 2 cut(s) 264, 345
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 33, 283
BstMBI GATC 2 cut(s) 30, 280
BstMWI GCNNNNNNNGC 4 cut(s) 47, 219, 228, 416
BstNI CCWGG 2 cut(s) 68, 239
BstNSI RCATGY 4 cut(s) 99, 103, 162, 184
BstSCI CCNGG 2 cut(s) 66, 237
BstV1I GCAGC 3 cut(s) 431, 461, 476
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 97, 101
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 127
CviAII CATG 7 cut(s) 45, 82, 96, 100, 159, 181, 277
CviJI RGCY 9 cut(s) 5, 41, 66, 300, 308, 410, 422, 452, 467
CviKI_1 RGCY 9 cut(s) 5, 41, 66, 300, 308, 410, 422, 452, 467
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 264, 345
DinI GGCGCC 1 cut(s) 223
DpnI GATC 2 cut(s) 32, 282
DpnII GATC 2 cut(s) 30, 280
DriI GACNNNNNGTC 2 cut(s) 117, 331
Eam1105I GACNNNNNGTC 2 cut(s) 117, 331
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 66, 237
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 3 cut(s) 101, 215, 358
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 7 cut(s) 48, 85, 99, 103, 162, 184, 280
FaiI YATR 7 cut(s) 46, 83, 97, 101, 160, 182, 278
FaqI GGGAC 1 cut(s) 99
FatI CATG 7 cut(s) 44, 81, 95, 99, 158, 180, 276
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 5 cut(s) 220, 420, 450, 465, 483
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 5 cut(s) 220, 420, 450, 465, 483
GlaI GCGC 1 cut(s) 223
GluI GCNGC 5 cut(s) 220, 420, 450, 465, 483
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 381
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 7 cut(s) 48, 85, 99, 103, 162, 184, 280
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 2 cut(s) 77, 262
HpaII CCGG 1 cut(s) 381
HphI GGTGA 2 cut(s) 363, 396
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 30, 190, 199
Hpy188III TCNNGA 3 cut(s) 74, 133, 266
Hpy8I GTNNAC 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 126, 329
HpyCH4IV ACGT 2 cut(s) 258, 312
HpyCH4V TGCA 9 cut(s) 95, 99, 103, 213, 287, 356, 419, 449, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 219, 228, 416
HpyF3I CTNAG 2 cut(s) 264, 345
HpySE526I ACGT 2 cut(s) 258, 312
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 7 cut(s) 48, 85, 99, 103, 162, 184, 280
HspAI GCGC 1 cut(s) 222
KasI GGCGCC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 2 cut(s) 30, 280
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 3 cut(s) 431, 461, 476
LweI GCATC 1 cut(s) 365
MaeII ACGT 2 cut(s) 258, 312
MaeIII GTNAC 2 cut(s) 164, 259
MalI GATC 2 cut(s) 32, 282
MboI GATC 2 cut(s) 30, 280
MboII GAAGA 4 cut(s) 187, 259, 357, 360
MflI RGATCY 1 cut(s) 280
MluCI AATT 2 cut(s) 7, 471
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 2 cut(s) 71, 256
MnlI CCTC 4 cut(s) 265, 400, 433, 463
Mph1103I ATGCAT 3 cut(s) 101, 215, 358
MseI TTAA 1 cut(s) 490
MslI CAYNNNNRTG 1 cut(s) 94
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 2 cut(s) 68, 239
MvaI CCWGG 2 cut(s) 68, 239
MwoI GCNNNNNNNGC 4 cut(s) 47, 219, 228, 416
NarI GGCGCC 1 cut(s) 222
NcoI CCATGG 1 cut(s) 81
NdeII GATC 2 cut(s) 30, 280
NlaIII CATG 7 cut(s) 48, 85, 99, 103, 162, 184, 280
NlaIV GGNNCC 2 cut(s) 87, 223
NmuCI GTSAC 2 cut(s) 164, 259
NsiI ATGCAT 3 cut(s) 101, 215, 358
NspI RCATGY 4 cut(s) 99, 103, 162, 184
PaeI GCATGC 2 cut(s) 99, 103
PceI AGGCCT 1 cut(s) 66
PciI ACATGT 1 cut(s) 158
PkrI GCNGC 5 cut(s) 221, 421, 451, 466, 484
PleI GAGTC 2 cut(s) 71, 256
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 2 cut(s) 71, 256
PscI ACATGT 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 66, 237
PspGI CCWGG 2 cut(s) 66, 237
PspN4I GGNNCC 2 cut(s) 87, 223
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 5 cut(s) 220, 420, 450, 465, 483
Sau3AI GATC 2 cut(s) 30, 280
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 2 cut(s) 71, 256
ScrFI CCNGG 2 cut(s) 68, 239
SetI ASST 5 cut(s) 261, 276, 315, 412, 469
SfaNI GCATC 1 cut(s) 365
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SphI GCATGC 2 cut(s) 99, 103
Sse9I AATT 2 cut(s) 7, 471
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 1 cut(s) 219
SspDI GGCGCC 1 cut(s) 221
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 66, 237
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 126, 329
TaiI ACGT 2 cut(s) 261, 315
TasI AATT 2 cut(s) 7, 471
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TseFI GTSAC 2 cut(s) 164, 259
TseI GCWGC 4 cut(s) 419, 449, 464, 482
Tsp45I GTSAC 2 cut(s) 164, 259
TspDTI ATGAA 3 cut(s) 33, 188, 448
VpaK11BI GGWCC 1 cut(s) 86
XceI RCATGY 4 cut(s) 99, 103, 162, 184
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 3 cut(s) 101, 215, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.