Rh5CG244700

Lipid transfer-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
25522589 .. 25523106
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG244700.1

Sequence Viewer

Length: 303 bp
ATGAAGAAGATGCTCTCAGAGTCGTGGGAAGATAAGAATTGCGTTTGTGGCATCTTCAACAATTCGCAAGTGTTGAAGAACCTTAACACAACCCAGGATGAGGCCTTGAAGCTTCCAAAGGCTTGTGGCGCAAATGCTGATATTTCAGCATGCAACAATAAGGGTTCTACACCTTCACCAACAAAATCCAATGCAGCCTCTCGTTTCGGCAAGTCTGGTTTTGCAGCCTTTTTCATTGCTCTAATCTTTTCATCAGCACTAAAAGCCTTGATCATGCTTAGACGTGGTATAAAGGAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

10.79

Weight (kDa)

9.55

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 3 cut(s) 58, 76, 109
AjiI CACGTC 1 cut(s) 284
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 194, 224
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 168
BbvI GCAGC 2 cut(s) 206, 236
BciT130I CCWGG 1 cut(s) 95
BclI TGATCA 1 cut(s) 270
BisI GCNGC 2 cut(s) 195, 225
BlsI GCNGC 2 cut(s) 196, 226
Bme1390I CCNGG 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 206, 236
BshFI GGCC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 270
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 16, 278
BstF5I GGATG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 273
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 3 cut(s) 48, 128, 263
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 206, 236
BsuRI GGCC 1 cut(s) 104
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 131
CviAII CATG 2 cut(s) 150, 274
CviJI RGCY 6 cut(s) 104, 112, 122, 197, 227, 266
CviKI_1 RGCY 6 cut(s) 104, 112, 122, 197, 227, 266
DdeI CTNAG 2 cut(s) 16, 278
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 153, 277
FaiI YATR 3 cut(s) 151, 275, 290
FatI CATG 2 cut(s) 149, 273
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 195, 225
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 195, 225
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 195, 225
HaeIII GGCC 1 cut(s) 104
HhaI GCGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 153, 277
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 153, 194, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 128, 263
HpyF3I CTNAG 2 cut(s) 16, 278
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 2 cut(s) 153, 277
HspAI GCGC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 3 cut(s) 80, 107, 201
Lsp1109I GCAGC 2 cut(s) 206, 236
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 283
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 5 cut(s) 16, 19, 41, 46, 88
MluCI AATT 2 cut(s) 37, 61
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 2 cut(s) 94, 208
MseI TTAA 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 48, 128, 263
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 153, 277
NspI RCATGY 1 cut(s) 153
PaeI GCATGC 1 cut(s) 153
PceI AGGCCT 1 cut(s) 104
PkrI GCNGC 2 cut(s) 196, 226
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 195, 225
Sau3AI GATC 1 cut(s) 270
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 95
SetI ASST 4 cut(s) 84, 114, 175, 286
SfaNI GCATC 1 cut(s) 60
SphI GCATGC 1 cut(s) 153
Sse9I AATT 2 cut(s) 37, 61
SseBI AGGCCT 1 cut(s) 104
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 286
TasI AATT 2 cut(s) 37, 61
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 2 cut(s) 194, 224
TspDTI ATGAA 3 cut(s) 17, 223, 240
XceI RCATGY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.