Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Reverse (-)

17819584 .. 17821906

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G235000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTATAAGATAGCGCCACACAAACCAAACCATTCCATTGAACCAACCAAACCCAAACTCTCTCTCCTTGTTCCTCTGTCTACTCTCTGTTTGATTTCTCTCTCACACAAAGCAACCAATCACCAACAACAACAGCCCTCCTCTAAGAAAACCAGAACCAAAACCATGGCTTCAATTTCAAAGCGCTTCTTCTCCTTCCTGTTTGTGATCATTTTCTCTTTACTGGGCTTTGTGGGTTTTTCGCAAGGCCGAAAGCTCAGTGGATTATCAGATCAAGAGGGTACTGGTGGTGGCAGTGGTGCTTCAATGCAATGCGTGCAGAAACTGATTCCTTGTCAACCATTTTTGAAGGCACCCGAGAAGGCCCCTGCAGCATGCTGCTCCCCACTCAAGCAGATGGTTTCCGACGATACCAAGTGCCTCTGCAGCGTCTTCAACAACCCTGGCATGTTGAGCAACCTTAACATAACCCAGGATGATGCCTTGAAGCTTCCCAAGGCTTGTGGTGCCAATGCTGACATTTCAATATGCGAAAAGGATGCATCATCAAGCACTTCACCGGCTTCCAACAATAGTTCTTCCTCAAGCAGTTCCAAGAGTGCAGCTTATGCACCCTCTCACTTTGGCGGATCGGGTTTTGCTGCCTTCTTCATGGCTTTAATCATTACATTTACAGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

228

Amino Acids

24.04

Weight (kDa)

9.34

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	352, 506
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	627
AclWI	GGATC	1 cut(s)	637
AfaI	GTAC	1 cut(s)	283
AfeI	AGCGCT	1 cut(s)	185
AgsI	TTSAA	8 cut(s)	41, 174, 180, 306, 349, 436, 487, 525
AjnI	CCWGG	2 cut(s)	442, 471
AluBI	AGCT	3 cut(s)	256, 490, 605
AluI	AGCT	3 cut(s)	256, 490, 605
AlwI	GGATC	1 cut(s)	637
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	185
AoxI	GGCC	2 cut(s)	247, 363
ApeKI	GCWGC	5 cut(s)	371, 378, 426, 602, 641
AspLEI	GCGC	2 cut(s)	16, 186
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	113, 549
AvaI	CYCGRG	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	352, 506
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	5 cut(s)	365, 383, 438, 614, 628
BccI	CCATC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	2 cut(s)	444, 473
BclI	TGATCA	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	369, 424
BfoI	RGCGCY	2 cut(s)	17, 187
BisI	GCNGC	5 cut(s)	372, 379, 427, 603, 642
BlsI	GCNGC	5 cut(s)	373, 380, 428, 604, 643
Bme1390I	CCNGG	2 cut(s)	444, 473
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	3 cut(s)	354, 366, 508
BmrFI	CCNGG	2 cut(s)	444, 473
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	3 cut(s)	469, 529, 551
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	424
BpuEI	CTTGAG	2 cut(s)	374, 568
BsaJI	CCNNGG	4 cut(s)	165, 442, 471, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	228, 289
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	444, 473
BseDI	CCNNGG	4 cut(s)	165, 442, 471, 495
BseGI	GGATG	2 cut(s)	481, 544
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	228, 289
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	5 cut(s)	365, 383, 438, 614, 628
BsgI	GTGCAG	2 cut(s)	338, 621
BshFI	GGCC	2 cut(s)	249, 365
BshNI	GGYRCC	2 cut(s)	352, 506
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	560
BsnI	GGCC	2 cut(s)	249, 365
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	207, 271, 629
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	2 cut(s)	249, 365
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	354, 366, 508
BspMAI	CTGCAG	2 cut(s)	373, 428
BspPI	GGATC	1 cut(s)	637
BspT107I	GGYRCC	2 cut(s)	352, 506
BsrDI	GCAATG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	228, 289
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	4 cut(s)	165, 442, 471, 495
BssMI	GATC	3 cut(s)	207, 271, 629
BssT1I	CCWWGG	2 cut(s)	165, 495
Bst2UI	CCWGG	2 cut(s)	444, 473
BstAPI	GCANNNNNTGC	2 cut(s)	316, 608
BstC8I	GCNNGC	2 cut(s)	317, 376
BstDEI	CTNAG	2 cut(s)	144, 257
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	481, 544
BstH2I	RGCGCY	2 cut(s)	17, 187
BstHHI	GCGC	2 cut(s)	16, 186
BstKTI	GATC	3 cut(s)	210, 274, 632
BstMBI	GATC	3 cut(s)	207, 271, 629
BstMWI	GCNNNNNNNGC	6 cut(s)	316, 371, 426, 453, 506, 608
BstNI	CCWGG	2 cut(s)	444, 473
BstNSI	RCATGY	2 cut(s)	378, 451
BstSCI	CCNGG	2 cut(s)	442, 471
BstSFI	CTRYAG	2 cut(s)	369, 424
BstV1I	GCAGC	5 cut(s)	365, 383, 438, 614, 628
BstV2I	GAAGAC	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	249, 365
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	481, 544
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	265, 301
Cac8I	GCNNGC	2 cut(s)	317, 376
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	2 cut(s)	16, 186
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	282
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	4 cut(s)	166, 375, 448, 652
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	144, 257
DpnI	GATC	3 cut(s)	209, 273, 631
DpnII	GATC	3 cut(s)	207, 271, 629
EciI	GGCGGA	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	165, 495
Eco47III	AGCGCT	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	442, 471
EcoT14I	CCWWGG	2 cut(s)	165, 495
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	2 cut(s)	165, 495
FaeI	CATG	4 cut(s)	169, 378, 451, 655
FaiI	YATR	8 cut(s)	6, 167, 376, 449, 467, 529, 609, 653
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	4 cut(s)	165, 374, 447, 651
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	5 cut(s)	372, 379, 427, 603, 642
FokI	GGATG	2 cut(s)	488, 551
Fsp4HI	GCNGC	5 cut(s)	372, 379, 427, 603, 642
GlaI	GCGC	2 cut(s)	15, 185
GluI	GCNGC	5 cut(s)	372, 379, 427, 603, 642
HaeII	RGCGCY	2 cut(s)	17, 187
HaeIII	GGCC	2 cut(s)	249, 365
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	2 cut(s)	16, 186
Hin1II	CATG	4 cut(s)	169, 378, 451, 655
Hin6I	GCGC	2 cut(s)	14, 184
HinP1I	GCGC	2 cut(s)	14, 184
HincII	GTYRAC	1 cut(s)	338
HindII	GTYRAC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	113, 549
Hpy166II	GTNNAC	2 cut(s)	81, 338
Hpy188I	TCNGA	2 cut(s)	271, 406
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	81, 338
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	4 cut(s)	205, 343, 355, 655
HpyCH4V	TGCA	7 cut(s)	310, 319, 371, 426, 542, 602, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	316, 371, 426, 453, 506, 608
HpyF3I	CTNAG	2 cut(s)	144, 257
Hsp92II	CATG	4 cut(s)	169, 378, 451, 655
HspAI	GCGC	2 cut(s)	14, 184
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	207, 271, 629
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	5 cut(s)	365, 383, 438, 614, 628
LweI	GCATC	3 cut(s)	469, 529, 551
MalI	GATC	3 cut(s)	209, 273, 631
MboI	GATC	3 cut(s)	207, 271, 629
MboII	GAAGA	4 cut(s)	181, 424, 570, 640
MluCI	AATT	1 cut(s)	174
MmeI	TCCRAC	2 cut(s)	429, 591
MnlI	CCTC	7 cut(s)	84, 148, 151, 271, 431, 592, 625
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	2 cut(s)	462, 659
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	444, 473
MvaI	CCWGG	2 cut(s)	444, 473
MwoI	GCNNNNNNNGC	6 cut(s)	316, 371, 426, 453, 506, 608
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	207, 271, 629
NlaIII	CATG	4 cut(s)	169, 378, 451, 655
NlaIV	GGNNCC	3 cut(s)	354, 366, 508
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	2 cut(s)	378, 451
PaeI	GCATGC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	5 cut(s)	373, 380, 428, 604, 643
Psp6I	CCWGG	2 cut(s)	442, 471
PspGI	CCWGG	2 cut(s)	442, 471
PspN4I	GGNNCC	3 cut(s)	354, 366, 508
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	2 cut(s)	373, 428
PstNI	CAGNNNCTG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	462, 659
SatI	GCNGC	5 cut(s)	372, 379, 427, 603, 642
Sau3AI	GATC	3 cut(s)	207, 271, 629
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	444, 473
SetI	ASST	4 cut(s)	258, 462, 492, 607
SfaNI	GCATC	3 cut(s)	469, 529, 551
SfcI	CTRYAG	2 cut(s)	369, 424
SmlI	CTYRAG	2 cut(s)	389, 583
SmoI	CTYRAG	2 cut(s)	389, 583
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	442, 471
StyI	CCWWGG	2 cut(s)	165, 495
TasI	AATT	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	462, 659
Tru9I	TTAA	2 cut(s)	462, 659
TscAI	CASTG	2 cut(s)	265, 301
TseI	GCWGC	5 cut(s)	371, 378, 426, 602, 641
TspDTI	ATGAA	1 cut(s)	640
TspRI	CASTG	2 cut(s)	265, 301
XceI	RCATGY	2 cut(s)	378, 451
XmiI	GTMKAC	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.