Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Forward (+)

756348 .. 758725

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGCAGAAACAACAGACCCTTCACCAACAACGACCATTCTCTTCTTCTCCTCGTTCTTATTCTTCAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGGTCTCCTCCTTGTCCTTCTCGCTCTCTTCCTTCTCCTCGGTGTATTCTTACCTTGGCCCGGATCTCCTTTGTTGCTATTTCCGAACAAAGTCTCTTCTCCTTCTTATGCTTCTTCTTTGTCTCCGCATGCCAAATCTGAATGGCGTAACTATACCCTTGCTCAGGCAGCTAAGTTTGTCGCCACGAACGGCACTGTGATCGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTGTATAAAGTCAACGAAAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAACCGCATACAGTTTCGGTTCCCAGGGTTTCTTCAACTTCACAGCTCGAAGGCCACAACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTTTACGGATGATATGCCTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGATCAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGTGCAAAGCTTCTAATGAAGAAATGGAGTGAGGAACTTCAGTCCCAAGCTTGGTCTGAGTCCATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCCCATCAAGTGGATCTCTACTTGCTTTCTCAGGTAGCTTTTCCAACAGGAGGATTGTATTTCAATGATGCGGCATGGGTTAAAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGATAGGAAAATGAGACGGTTCCAAGATTATGGTCTATGGCTAGTCGATGATCATGCTCTCGAGTCTCCATTAGGGAAATTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

367

Amino Acids

41.8

Weight (kDa)

8.75

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	126 - 346	3e-51	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	892
AccII	CGCG	1 cut(s)	644
AciI	CCGC	4 cut(s)	100, 230, 486, 953
AclWI	GGATC	4 cut(s)	175, 605, 717, 903
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	2 cut(s)	581, 647
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	6 cut(s)	164, 268, 764, 816, 892, 932
AflIII	ACRYGT	2 cut(s)	642, 982
AgsI	TTSAA	4 cut(s)	69, 517, 682, 946
AjnI	CCWGG	2 cut(s)	442, 504
AluBI	AGCT	8 cut(s)	275, 321, 527, 562, 738, 775, 815, 920
AluI	AGCT	8 cut(s)	275, 321, 527, 562, 738, 775, 815, 920
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	7 cut(s)	113, 202, 231, 716, 962, 1024, 1086
AlwI	GGATC	4 cut(s)	175, 605, 717, 903
Ama87I	CYCGRG	1 cut(s)	1076
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	4 cut(s)	161, 440, 445, 533
ApeKI	GCWGC	2 cut(s)	272, 738
ApoI	RAATTY	1 cut(s)	552
AspLEI	GCGC	4 cut(s)	7, 314, 472, 706
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	17, 315
AvaI	CYCGRG	1 cut(s)	1076
BalI	TGGCCA	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	284, 725
BccI	CCATC	3 cut(s)	92, 836, 894
BceAI	ACGGC	3 cut(s)	299, 310, 437
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 1052, 1086
BciT130I	CCWGG	2 cut(s)	444, 506
BclI	TGATCA	2 cut(s)	847, 1066
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	7 cut(s)	113, 202, 231, 716, 962, 1024, 1086
BfaI	CTAG	3 cut(s)	366, 563, 1058
BfoI	RGCGCY	2 cut(s)	473, 707
BisI	GCNGC	4 cut(s)	100, 273, 739, 954
BlsI	GCNGC	4 cut(s)	101, 274, 740, 955
Bme1390I	CCNGG	3 cut(s)	165, 444, 506
BmeT110I	CYCGRG	1 cut(s)	1076
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	502, 1037
BmrFI	CCNGG	3 cut(s)	165, 444, 506
BmsI	GCATC	2 cut(s)	385, 940
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	3 cut(s)	95, 267, 402
BpuMI	CCSGG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	142, 158, 504, 505
Bsc4I	CCNNNNNNNGG	6 cut(s)	164, 268, 764, 816, 892, 932
Bse1I	ACTGG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	444, 506
BseDI	CCNNGG	4 cut(s)	142, 158, 504, 505
BseGI	GGATG	2 cut(s)	661, 828
BseLI	CCNNNNNNNGG	6 cut(s)	164, 268, 764, 816, 892, 932
BseMII	CTCAG	4 cut(s)	281, 393, 813, 926
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	3 cut(s)	42, 101, 131
BseXI	GCAGC	2 cut(s)	284, 725
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	4 cut(s)	163, 442, 447, 535
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	1076
BsiSI	CCGG	2 cut(s)	165, 707
BslFI	GGGAC	2 cut(s)	66, 793
BslI	CCNNNNNNNGG	6 cut(s)	164, 268, 764, 816, 892, 932
BsmAI	GTCTC	7 cut(s)	113, 202, 231, 716, 962, 1024, 1086
BsmBI	CGTCTC	1 cut(s)	1024
BsmFI	GGGAC	2 cut(s)	66, 793
BsnI	GGCC	4 cut(s)	163, 442, 447, 535
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	1076
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
BspACI	CCGC	4 cut(s)	100, 230, 486, 953
BspANI	GGCC	4 cut(s)	163, 442, 447, 535
BspCNI	CTCAG	4 cut(s)	280, 394, 814, 925
BspFNI	CGCG	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	502, 1037
BspPI	GGATC	4 cut(s)	175, 605, 717, 903
BspTNI	GGTCTC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	4 cut(s)	142, 158, 504, 505
BssMI	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
BssT1I	CCWWGG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	444, 506
Bst4CI	ACNGT	5 cut(s)	80, 107, 301, 494, 1035
Bst6I	CTCTTC	3 cut(s)	49, 137, 205
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	234, 855
BstDEI	CTNAG	6 cut(s)	95, 267, 276, 402, 822, 912
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	661, 828
BstFNI	CGCG	1 cut(s)	644
BstH2I	RGCGCY	2 cut(s)	473, 707
BstHHI	GCGC	4 cut(s)	7, 314, 472, 706
BstKTI	GATC	8 cut(s)	170, 306, 399, 613, 712, 850, 898, 1069
BstMAI	GTCTC	7 cut(s)	113, 202, 231, 716, 962, 1024, 1086
BstMBI	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 318
BstNI	CCWGG	2 cut(s)	444, 506
BstNSI	RCATGY	2 cut(s)	236, 986
BstSCI	CCNGG	3 cut(s)	163, 442, 504
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	284, 725
BstX2I	RGATCY	3 cut(s)	167, 610, 895
BstXI	CCANNNNNNTGG	1 cut(s)	1046
BstYI	RGATCY	3 cut(s)	167, 610, 895
BsuRI	GGCC	4 cut(s)	163, 442, 447, 535
BtsCI	GGATG	2 cut(s)	661, 828
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	234, 855
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	4 cut(s)	7, 314, 472, 706
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	580, 646
CviAII	CATG	7 cut(s)	233, 638, 692, 742, 957, 983, 1070
CviQI	GTAC	2 cut(s)	580, 646
DdeI	CTNAG	6 cut(s)	95, 267, 276, 402, 822, 912
DpnI	GATC	8 cut(s)	169, 305, 398, 612, 711, 849, 897, 1068
DpnII	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
DraI	TTTAAA	1 cut(s)	838
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	3 cut(s)	49, 137, 205
EarI	CTCTTC	3 cut(s)	49, 137, 205
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	113
Eco47III	AGCGCT	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	1076
EcoICRI	GAGCTC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	442, 504
EcoT14I	CCWWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	1024
FaeI	CATG	7 cut(s)	236, 641, 695, 745, 960, 986, 1073
FaqI	GGGAC	2 cut(s)	66, 793
FatI	CATG	7 cut(s)	232, 637, 691, 741, 956, 982, 1069
FbaI	TGATCA	2 cut(s)	847, 1066
Fnu4HI	GCNGC	4 cut(s)	100, 273, 739, 954
FokI	GGATG	2 cut(s)	668, 815
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	4 cut(s)	100, 273, 739, 954
FspBI	CTAG	3 cut(s)	366, 563, 1058
GlaI	GCGC	4 cut(s)	6, 313, 471, 705
GluI	GCNGC	4 cut(s)	100, 273, 739, 954
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	2 cut(s)	473, 707
HaeIII	GGCC	4 cut(s)	163, 442, 447, 535
HapII	CCGG	2 cut(s)	165, 707
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	4 cut(s)	7, 314, 472, 706
Hin1II	CATG	7 cut(s)	236, 641, 695, 745, 960, 986, 1073
Hin6I	GCGC	4 cut(s)	5, 312, 470, 704
HinP1I	GCGC	4 cut(s)	5, 312, 470, 704
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	2 cut(s)	773, 813
HinfI	GANTC	4 cut(s)	476, 682, 824, 1079
HpaII	CCGG	2 cut(s)	165, 707
HphI	GGTGA	2 cut(s)	17, 315
Hpy166II	GTNNAC	2 cut(s)	430, 994
Hpy188I	TCNGA	3 cut(s)	189, 244, 823
Hpy188III	TCNNGA	4 cut(s)	366, 380, 692, 1076
Hpy8I	GTNNAC	2 cut(s)	430, 994
HpyAV	CCTTC	5 cut(s)	32, 131, 146, 216, 525
HpyCH4III	ACNGT	5 cut(s)	80, 107, 301, 494, 1035
HpyCH4V	TGCA	5 cut(s)	550, 607, 741, 770, 1099
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 318
HpyF3I	CTNAG	6 cut(s)	95, 267, 276, 402, 822, 912
Hsp92II	CATG	7 cut(s)	236, 641, 695, 745, 960, 986, 1073
HspAI	GCGC	4 cut(s)	5, 312, 470, 704
Ksp22I	TGATCA	2 cut(s)	847, 1066
Kzo9I	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	284, 725
LweI	GCATC	2 cut(s)	385, 940
MaeI	CTAG	3 cut(s)	366, 563, 1058
MaeIII	GTNAC	3 cut(s)	251, 566, 1013
MalI	GATC	8 cut(s)	169, 305, 398, 612, 711, 849, 897, 1068
MboI	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
MboII	GAAGA	8 cut(s)	36, 39, 57, 124, 192, 210, 505, 796
MflI	RGATCY	3 cut(s)	167, 610, 895
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	2 cut(s)	552, 1094
MluI	ACGCGT	1 cut(s)	642
MluNI	TGGCCA	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	833, 1088
MmeI	TCCRAC	1 cut(s)	950
MnlI	CCTC	9 cut(s)	63, 122, 152, 397, 474, 622, 675, 790, 926
Mox20I	TGGCCA	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	4 cut(s)	837, 861, 873, 963
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	447
MspI	CCGG	2 cut(s)	165, 707
MspR9I	CCNGG	3 cut(s)	165, 444, 506
MvaI	CCWGG	2 cut(s)	444, 506
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	272, 318
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
NlaIII	CATG	7 cut(s)	236, 641, 695, 745, 960, 986, 1073
NlaIV	GGNNCC	2 cut(s)	502, 1037
NspI	RCATGY	2 cut(s)	236, 986
PaeI	GCATGC	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	1076
PagI	TCATGA	1 cut(s)	691
PasI	CCCWGGG	1 cut(s)	505
PciI	ACATGT	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	476, 682
PflMI	CCANNNNNTGG	1 cut(s)	892
PkrI	GCNGC	4 cut(s)	101, 274, 740, 955
PleI	GAGTC	2 cut(s)	832, 1087
PpsI	GAGTC	2 cut(s)	832, 1087
PscI	ACATGT	1 cut(s)	982
Psp124BI	GAGCTC	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	442, 504
PspGI	CCWGG	2 cut(s)	442, 504
PspN4I	GGNNCC	2 cut(s)	502, 1037
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	3 cut(s)	167, 610, 895
RsaI	GTAC	2 cut(s)	581, 647
RsaNI	GTAC	2 cut(s)	580, 646
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	4 cut(s)	837, 861, 873, 963
SatI	GCNGC	4 cut(s)	100, 273, 739, 954
Sau3AI	GATC	8 cut(s)	167, 303, 396, 610, 709, 847, 895, 1066
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	2 cut(s)	833, 1088
ScrFI	CCNGG	3 cut(s)	165, 444, 506
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	385, 940
Sfr274I	CTCGAG	1 cut(s)	1076
SlaI	CTCGAG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	552, 1094
SsiI	CCGC	4 cut(s)	100, 230, 486, 953
SspMI	CTAG	3 cut(s)	366, 563, 1058
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	163, 442, 504
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	5 cut(s)	80, 107, 301, 494, 1035
TaqI	TCGA	4 cut(s)	474, 529, 1062, 1077
TasI	AATT	2 cut(s)	552, 1094
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	2 cut(s)	102, 956
TfiI	GAWTC	2 cut(s)	476, 682
Tru1I	TTAA	4 cut(s)	837, 861, 873, 963
Tru9I	TTAA	4 cut(s)	837, 861, 873, 963
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	2 cut(s)	272, 738
TspDTI	ATGAA	1 cut(s)	797
TspGWI	ACGGA	3 cut(s)	668, 732, 821
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	892
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	552
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	2 cut(s)	236, 986
XhoI	CTCGAG	1 cut(s)	1076
XspI	CTAG	3 cut(s)	366, 563, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.