Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Reverse (-)

10019928 .. 10022882

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCGGCGTTCCTCCACCAGCGCCCACTCCACAACCCATTTTCAGATCCACACCCACTATCCCAACCTCCCTCAAATCCCAGAAAGCCCTTCTCATATTCCAACCCAATAACCCTCCTAGTCCTTCTCTGCTTGTTAATAATCATGGGTGTGTTTCTTCCATGGACAAGTATGCAGCAGGGTCTGTTCTCCATCACTAACAAGTCCCAGCTGAAATGGAGGGACTACACATTGGCCCAAGCTGCGGCCTTTGTGGCCCAAAATGGGACCTTGATTGTTTGTGCTGTGAGTGAGCCTTACTTGCCGTTTCTGAACAACTGGTTGATCAGCATTGCCAGGCAGAAGCATCAGGATAAGGTGCTTGTGATTGCTGAGGACTATGGGACGCTTTATAAGGTCAATGAGAGGTGGCCGGGCCACGCCGTGCTTATACCCCCAGCTCTTGATGCTAAGGCTGCCCATAAGTTTGGTTCTCAGGGATTCTTCAACTTTACTTCCAGAAGGCCGCGCCACCTATTAAACATTTTGGAGCTTGGATACAGTGTGATGTACAATGACGTTGATATGGTGTGGTTGGCTGATCCCTTTCCTTATTTGGTAGGGAATCATGATGTGTACTTCACAGATGATATGACTCCAGTCAAACCTCTGAACCATTCTCATGATTTGCCACCTATAGGTAAGAAAGGGCGCACTTACATATGCAGCTGTATGATCTTTTTACGTCCTACAAGCGGAGCAAAATTAATTATGAAGAAGTGGATTGAGGAAATGCAGCAGGAGCCCTGGTCCAGAGCAAAGAAAGCAAATGATCAACCTGCTTTTAACTGGGCATTAGACAAAAATGCTGCACAGGCGGATCTGTACTTGCTGCCACAGGCAGCATTCCCAACTGGAGGATTATATTTCAAGAACAAGACATGGGTAAAGGAAACCAAGGGGATGCATGTTATAATCCACAATAACTATATCTTAGGTTTCGAGAAGAAGATAAAGCGCTTTCATGATTATGATCTTTGGTTGGTAGATGATCATGCTGATGAGTCCCCCCTTGGGAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

355

Amino Acids

40.58

Weight (kDa)

9.06

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	116 - 334	6.1e-46	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	393, 953
Acc36I	ACCTGC	1 cut(s)	826
AccII	CGCG	1 cut(s)	508
AciI	CCGC	4 cut(s)	245, 506, 735, 857
AclWI	GGATC	3 cut(s)	41, 575, 867
AcoI	YGGCCR	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	3 cut(s)	551, 617, 866
AfeI	AGCGCT	1 cut(s)	998
AfiI	CCNNNNNNNGG	6 cut(s)	244, 264, 677, 734, 896, 1053
AgsI	TTSAA	2 cut(s)	487, 910
AjnI	CCWGG	2 cut(s)	335, 785
AluBI	AGCT	5 cut(s)	211, 242, 440, 532, 708
AluI	AGCT	5 cut(s)	211, 242, 440, 532, 708
AlwI	GGATC	3 cut(s)	41, 575, 867
AlwNI	CAGNNNCTG	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	998
AoxI	GGCC	6 cut(s)	234, 246, 255, 410, 415, 503
ApeKI	GCWGC	8 cut(s)	175, 242, 455, 705, 775, 848, 871, 881
AseI	ATTAAT	1 cut(s)	746
AspLEI	GCGC	4 cut(s)	24, 510, 693, 999
AspS9I	GGNCC	5 cut(s)	235, 256, 267, 415, 789
AsuC2I	CCSGG	1 cut(s)	414
AvaII	GGWCC	2 cut(s)	267, 789
BanII	GRGCYC	1 cut(s)	786
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	8 cut(s)	187, 229, 442, 717, 787, 835, 858, 893
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	289, 407
BciT130I	CCWGG	2 cut(s)	337, 787
BciVI	GTATCC	1 cut(s)	530
BclI	TGATCA	3 cut(s)	324, 811, 1030
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	2 cut(s)	25, 1000
BfuAI	ACCTGC	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	254
Bme1390I	CCNGG	3 cut(s)	337, 414, 787
Bme18I	GGWCC	2 cut(s)	267, 789
BmgT120I	GGNCC	5 cut(s)	235, 256, 267, 415, 789
BmiI	GGNNCC	2 cut(s)	268, 783
BmrFI	CCNGG	3 cut(s)	337, 414, 787
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	3 cut(s)	355, 436, 933
BmuI	ACTGGG	1 cut(s)	838
BoxI	GACNNNNGTC	1 cut(s)	638
BpmI	CTGGAG	2 cut(s)	621, 915
Bpu10I	CCTNAGC	2 cut(s)	372, 450
BpuMI	CCSGG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaJI	CCNNGG	4 cut(s)	161, 785, 936, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	6 cut(s)	244, 264, 677, 734, 896, 1053
Bse1I	ACTGG	4 cut(s)	323, 638, 833, 898
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	1011
BseBI	CCWGG	2 cut(s)	337, 787
BseDI	CCNNGG	4 cut(s)	161, 785, 936, 1051
BseGI	GGATG	1 cut(s)	948
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	6 cut(s)	244, 264, 677, 734, 896, 1053
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	363, 488
BseNI	ACTGG	4 cut(s)	323, 638, 833, 898
BseXI	GCAGC	8 cut(s)	187, 229, 442, 717, 787, 835, 858, 893
BseYI	CCCAGC	2 cut(s)	207, 436
BsgI	GTGCAG	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	6 cut(s)	236, 248, 257, 412, 417, 505
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	5 cut(s)	190, 236, 280, 397, 1030
BslI	CCNNNNNNNGG	6 cut(s)	244, 264, 677, 734, 896, 1053
BsmFI	GGGAC	5 cut(s)	190, 236, 280, 397, 1030
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	6 cut(s)	236, 248, 257, 412, 417, 505
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	4 cut(s)	245, 506, 735, 857
BspANI	GGCC	6 cut(s)	236, 248, 257, 412, 417, 505
BspCNI	CTCAG	2 cut(s)	364, 487
BspFNI	CGCG	1 cut(s)	508
BspHI	TCATGA	3 cut(s)	607, 661, 1003
BspLI	GGNNCC	2 cut(s)	268, 783
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	41, 575, 867
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	4 cut(s)	323, 638, 833, 898
BssECI	CCNNGG	4 cut(s)	161, 785, 936, 1051
BssMI	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
BssT1I	CCWWGG	3 cut(s)	161, 936, 1051
Bst2UI	CCWGG	2 cut(s)	337, 787
Bst4CI	ACNGT	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	549
BstDEI	CTNAG	4 cut(s)	372, 450, 474, 973
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	948
BstFNI	CGCG	1 cut(s)	508
BstH2I	RGCGCY	2 cut(s)	25, 1000
BstHHI	GCGC	4 cut(s)	24, 510, 693, 999
BstKTI	GATC	8 cut(s)	49, 327, 583, 717, 814, 862, 1015, 1033
BstMBI	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 254, 301, 446, 455, 781, 803, 854
BstNI	CCWGG	2 cut(s)	337, 787
BstNSI	RCATGY	1 cut(s)	950
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	335, 412, 785
BstSFI	CTRYAG	1 cut(s)	675
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	8 cut(s)	187, 229, 442, 717, 787, 835, 858, 893
BstX2I	RGATCY	2 cut(s)	46, 859
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	2 cut(s)	46, 859
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	6 cut(s)	236, 248, 257, 412, 417, 505
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	948
BtsIMutI	CAGTG	1 cut(s)	547
BveI	ACCTGC	1 cut(s)	826
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	3 cut(s)	607, 661, 1003
CfoI	GCGC	4 cut(s)	24, 510, 693, 999
Cfr13I	GGNCC	5 cut(s)	235, 256, 267, 415, 789
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	550, 616, 865
CviAII	CATG	8 cut(s)	145, 162, 608, 662, 921, 947, 1004, 1034
CviQI	GTAC	3 cut(s)	550, 616, 865
DdeI	CTNAG	4 cut(s)	372, 450, 474, 973
DpnI	GATC	8 cut(s)	48, 326, 582, 716, 813, 861, 1014, 1032
DpnII	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	872
Eco130I	CCWWGG	3 cut(s)	161, 936, 1051
Eco24I	GRGCYC	1 cut(s)	786
Eco47I	GGWCC	2 cut(s)	267, 789
Eco47III	AGCGCT	1 cut(s)	998
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	335, 785
EcoT14I	CCWWGG	3 cut(s)	161, 936, 1051
EcoT22I	ATGCAT	1 cut(s)	948
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	3 cut(s)	161, 936, 1051
FaeI	CATG	8 cut(s)	148, 165, 611, 665, 924, 950, 1007, 1037
FaqI	GGGAC	5 cut(s)	190, 236, 280, 397, 1030
FatI	CATG	8 cut(s)	144, 161, 607, 661, 920, 946, 1003, 1033
FauNDI	CATATG	1 cut(s)	701
FbaI	TGATCA	3 cut(s)	324, 811, 1030
FokI	GGATG	1 cut(s)	955
FriOI	GRGCYC	1 cut(s)	786
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	4 cut(s)	23, 509, 692, 998
GsaI	CCCAGC	2 cut(s)	211, 440
GsuI	CTGGAG	2 cut(s)	621, 915
HaeII	RGCGCY	2 cut(s)	25, 1000
HaeIII	GGCC	6 cut(s)	236, 248, 257, 412, 417, 505
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	4 cut(s)	24, 510, 693, 999
Hin1II	CATG	8 cut(s)	148, 165, 611, 665, 924, 950, 1007, 1037
Hin6I	GCGC	4 cut(s)	22, 508, 691, 997
HinP1I	GCGC	4 cut(s)	22, 508, 691, 997
HinfI	GANTC	4 cut(s)	480, 604, 634, 1043
HpaII	CCGG	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	3 cut(s)	46, 312, 651
Hpy188III	TCNNGA	9 cut(s)	350, 443, 498, 608, 662, 792, 910, 982, 1004
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	3 cut(s)	100, 134, 495
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	2 cut(s)	558, 724
HpyCH4V	TGCA	5 cut(s)	175, 705, 775, 851, 946
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 254, 301, 446, 455, 781, 803, 854
HpyF3I	CTNAG	4 cut(s)	372, 450, 474, 973
HpySE526I	ACGT	2 cut(s)	558, 724
Hsp92II	CATG	8 cut(s)	148, 165, 611, 665, 924, 950, 1007, 1037
HspAI	GCGC	4 cut(s)	22, 508, 691, 997
Ksp22I	TGATCA	3 cut(s)	324, 811, 1030
Kzo9I	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
LmnI	GCTCC	3 cut(s)	529, 737, 781
Lsp1109I	GCAGC	8 cut(s)	187, 229, 442, 717, 787, 835, 858, 893
LweI	GCATC	3 cut(s)	355, 436, 933
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	2 cut(s)	558, 724
MalI	GATC	8 cut(s)	48, 326, 582, 716, 813, 861, 1014, 1032
MboI	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
MboII	GAAGA	5 cut(s)	149, 475, 766, 997, 1000
MflI	RGATCY	2 cut(s)	46, 859
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	2 cut(s)	743, 747
MlyI	GAGTC	2 cut(s)	628, 1052
MmeI	TCCRAC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	948
MseI	TTAA	4 cut(s)	137, 518, 746, 825
MslI	CAYNNNNRTG	4 cut(s)	149, 660, 1008, 1038
MspA1I	CMGCKG	2 cut(s)	211, 708
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	3 cut(s)	337, 414, 787
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	2 cut(s)	337, 787
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	8 cut(s)	242, 254, 301, 446, 455, 781, 803, 854
NciI	CCSGG	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	701
NdeII	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
NlaIII	CATG	8 cut(s)	148, 165, 611, 665, 924, 950, 1007, 1037
NlaIV	GGNNCC	2 cut(s)	268, 783
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	1 cut(s)	950
PagI	TCATGA	3 cut(s)	607, 661, 1003
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	480, 604
PleI	GAGTC	2 cut(s)	628, 1051
PpsI	GAGTC	2 cut(s)	628, 1051
PpuMI	RGGWCCY	1 cut(s)	267
PshAI	GACNNNNGTC	1 cut(s)	638
PshBI	ATTAAT	1 cut(s)	746
PsiI	TTATAA	2 cut(s)	393, 953
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	335, 785
PspFI	CCCAGC	2 cut(s)	207, 436
PspGI	CCWGG	2 cut(s)	335, 785
PspN4I	GGNNCC	2 cut(s)	268, 783
PspPI	GGNCC	5 cut(s)	235, 256, 267, 415, 789
PspPPI	RGGWCCY	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	46, 859
PvuII	CAGCTG	2 cut(s)	211, 708
RsaI	GTAC	3 cut(s)	551, 617, 866
RsaNI	GTAC	3 cut(s)	550, 616, 865
RseI	CAYNNNNRTG	4 cut(s)	149, 660, 1008, 1038
SaqAI	TTAA	4 cut(s)	137, 518, 746, 825
Sau3AI	GATC	8 cut(s)	46, 324, 580, 714, 811, 859, 1012, 1030
Sau96I	GGNCC	5 cut(s)	235, 256, 267, 415, 789
SchI	GAGTC	2 cut(s)	628, 1052
ScrFI	CCNGG	3 cut(s)	337, 414, 787
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	3 cut(s)	355, 436, 933
SfcI	CTRYAG	1 cut(s)	675
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
SinI	GGWCC	2 cut(s)	267, 789
SmiMI	CAYNNNNRTG	4 cut(s)	149, 660, 1008, 1038
Sse9I	AATT	2 cut(s)	743, 747
SsiI	CCGC	4 cut(s)	245, 506, 735, 857
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	335, 412, 785
StyI	CCWWGG	3 cut(s)	161, 936, 1051
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	2 cut(s)	561, 727
TaqI	TCGA	1 cut(s)	981
TasI	AATT	2 cut(s)	743, 747
TatI	WGTACW	3 cut(s)	549, 615, 864
TauI	GCSGC	2 cut(s)	248, 508
TfiI	GAWTC	2 cut(s)	480, 604
Tru1I	TTAA	4 cut(s)	137, 518, 746, 825
Tru9I	TTAA	4 cut(s)	137, 518, 746, 825
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	8 cut(s)	175, 242, 455, 705, 775, 848, 871, 881
TspDTI	ATGAA	2 cut(s)	767, 992
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	2 cut(s)	267, 789
VspI	ATTAAT	1 cut(s)	746
XceI	RCATGY	1 cut(s)	950
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.