Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Forward (+)

764473 .. 766876

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGCAGAAACAACATATTCTTAAACAAAGTACATTCTCTTCCTCTCCTAGTTCTTATTCTTCAATCTCAGACCGTCCCATCTCTCTCCTTAGCCGCAACGGTCTCCTCCTTCTCCTTCTCGCTCTCGTCCTGCTCCTCGGTGTACTCTTGCCCTGGCCAGGATCTCCCTTATTCCTGTTTCCAAATAGACTTTCTTCTTCTTTGTCACCGTCTCCGCAGTCCAAATGGCGCGACTATACCCTTGCTCAGGCGGCTAGGTTCGTGGCCAAGAATGGCACTGTGATAGTCTGCGCCGTGAGCTCACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTTCTAGACAAAAGCATCAAGACAAAGTCCTCGTGATCGCTGAGGATTACATTACTCTGTATAAAGTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAACCGCATTCAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTTCACCGATGACATGCCTCAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGATCGAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGGTGCAAAGCTTCTAATGAAGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCTGAATCCATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCTCATCAAGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTACTTCAAGAACGAGGCATGGGTTCAAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGACAGGAAAATGAAACGTTTCCAAGATTACGGTCTATGGCTTGTCGATGATCACGCTCTTGAGTCTCCATTAGGGAAATTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

361

Amino Acids

41.17

Weight (kDa)

8.26

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	120 - 292	1e-40	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	234, 626
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	5 cut(s)	97, 218, 254, 468, 518
AclI	AACGTT	1 cut(s)	1015
AclWI	GGATC	4 cut(s)	172, 587, 699, 885
AcoI	YGGCCR	3 cut(s)	158, 267, 427
AcsI	RAATTY	1 cut(s)	534
AfaI	GTAC	4 cut(s)	34, 147, 563, 923
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	5 cut(s)	161, 250, 746, 798, 914
AflIII	ACRYGT	2 cut(s)	624, 964
AgsI	TTSAA	6 cut(s)	66, 499, 664, 788, 928, 947
AjnI	CCWGG	4 cut(s)	155, 160, 424, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	8 cut(s)	303, 509, 544, 720, 757, 797, 866, 902
AluI	AGCT	8 cut(s)	303, 509, 544, 720, 757, 797, 866, 902
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	5 cut(s)	110, 219, 698, 944, 1068
AlwI	GGATC	4 cut(s)	172, 587, 699, 885
Aor13HI	TCCGGA	1 cut(s)	688
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	5 cut(s)	158, 267, 422, 427, 515
ApeKI	GCWGC	1 cut(s)	720
ApoI	RAATTY	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	3 cut(s)	234, 296, 454
AsuHPI	GGTGA	3 cut(s)	201, 297, 625
BalI	TGGCCA	3 cut(s)	160, 269, 429
BanII	GRGCYC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BauI	CACGAG	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	2 cut(s)	89, 818
BceAI	ACGGC	2 cut(s)	281, 419
BciT130I	CCWGG	4 cut(s)	157, 162, 426, 488
BclI	TGATCA	2 cut(s)	829, 1048
BcoDI	GTCTC	5 cut(s)	110, 219, 698, 944, 1068
BfaI	CTAG	4 cut(s)	51, 258, 348, 545
BfoI	RGCGCY	1 cut(s)	455
BisI	GCNGC	4 cut(s)	97, 255, 518, 721
BlsI	GCNGC	4 cut(s)	98, 256, 519, 722
Bme1390I	CCNGG	4 cut(s)	157, 162, 426, 488
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	4 cut(s)	157, 162, 426, 488
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	3 cut(s)	92, 249, 384
BpuEI	CTTGAG	2 cut(s)	879, 1079
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	139, 155, 486, 487
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 250, 746, 798, 914
Bse1I	ACTGG	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	4 cut(s)	157, 162, 426, 488
BseDI	CCNNGG	4 cut(s)	139, 155, 486, 487
BseGI	GGATG	2 cut(s)	685, 810
BseLI	CCNNNNNNNGG	5 cut(s)	161, 250, 746, 798, 914
BseMII	CTCAG	3 cut(s)	84, 263, 375
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	98, 128
BseXI	GCAGC	1 cut(s)	707
Bsh1236I	CGCG	2 cut(s)	234, 626
BshFI	GGCC	5 cut(s)	160, 269, 424, 429, 517
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	5 cut(s)	161, 250, 746, 798, 914
BsmAI	GTCTC	5 cut(s)	110, 219, 698, 944, 1068
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	160, 269, 424, 429, 517
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	688
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
BspACI	CCGC	5 cut(s)	97, 218, 254, 468, 518
BspANI	GGCC	5 cut(s)	160, 269, 424, 429, 517
BspCNI	CTCAG	3 cut(s)	83, 262, 376
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	2 cut(s)	234, 626
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	4 cut(s)	172, 587, 699, 885
BspTNI	GGTCTC	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	139, 155, 486, 487
BssMI	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	4 cut(s)	157, 162, 426, 488
Bst4CI	ACNGT	5 cut(s)	77, 104, 213, 283, 1031
Bst6I	CTCTTC	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	4 cut(s)	70, 92, 249, 384
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	685, 810
BstFNI	CGCG	2 cut(s)	234, 626
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	3 cut(s)	234, 296, 454
BstKTI	GATC	7 cut(s)	167, 381, 595, 694, 832, 880, 1051
BstMAI	GTCTC	5 cut(s)	110, 219, 698, 944, 1068
BstMBI	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 300
BstNI	CCWGG	4 cut(s)	157, 162, 426, 488
BstNSI	RCATGY	2 cut(s)	646, 968
BstSCI	CCNGG	4 cut(s)	155, 160, 424, 486
BstUI	CGCG	2 cut(s)	234, 626
BstV1I	GCAGC	1 cut(s)	707
BstX2I	RGATCY	3 cut(s)	164, 592, 877
BstYI	RGATCY	3 cut(s)	164, 592, 877
BsuRI	GGCC	5 cut(s)	160, 269, 424, 429, 517
BtsCI	GGATG	2 cut(s)	685, 810
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	837
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	3 cut(s)	234, 296, 454
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	4 cut(s)	33, 146, 562, 922
CviAII	CATG	6 cut(s)	620, 643, 674, 724, 939, 965
CviQI	GTAC	4 cut(s)	33, 146, 562, 922
DdeI	CTNAG	4 cut(s)	70, 92, 249, 384
DpnI	GATC	7 cut(s)	166, 380, 594, 693, 831, 879, 1050
DpnII	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
DraI	TTTAAA	1 cut(s)	820
EaeI	YGGCCR	3 cut(s)	158, 267, 427
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	4 cut(s)	155, 160, 424, 486
EcoT38I	GRGCYC	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	6 cut(s)	623, 646, 677, 727, 942, 968
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	6 cut(s)	619, 642, 673, 723, 938, 964
FbaI	TGATCA	2 cut(s)	829, 1048
Fnu4HI	GCNGC	4 cut(s)	97, 255, 518, 721
FokI	GGATG	2 cut(s)	672, 797
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	4 cut(s)	97, 255, 518, 721
FspBI	CTAG	4 cut(s)	51, 258, 348, 545
GlaI	GCGC	3 cut(s)	233, 295, 453
GluI	GCNGC	4 cut(s)	97, 255, 518, 721
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	5 cut(s)	160, 269, 424, 429, 517
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	3 cut(s)	234, 296, 454
Hin1II	CATG	6 cut(s)	623, 646, 677, 727, 942, 968
Hin6I	GCGC	3 cut(s)	232, 294, 452
HinP1I	GCGC	3 cut(s)	232, 294, 452
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	2 cut(s)	755, 795
HinfI	GANTC	4 cut(s)	458, 664, 806, 1061
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	3 cut(s)	201, 297, 625
Hpy166II	GTNNAC	3 cut(s)	146, 412, 976
Hpy188I	TCNGA	2 cut(s)	73, 805
Hpy188III	TCNNGA	8 cut(s)	348, 362, 376, 674, 689, 928, 947, 1058
Hpy8I	GTNNAC	3 cut(s)	146, 412, 976
HpyAV	CCTTC	3 cut(s)	122, 128, 507
HpyCH4III	ACNGT	5 cut(s)	77, 104, 213, 283, 1031
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	4 cut(s)	532, 589, 723, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 300
HpyF3I	CTNAG	4 cut(s)	70, 92, 249, 384
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	6 cut(s)	623, 646, 677, 727, 942, 968
HspAI	GCGC	3 cut(s)	232, 294, 452
Kpn2I	TCCGGA	1 cut(s)	688
Ksp22I	TGATCA	2 cut(s)	829, 1048
Kzo9I	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
LmnI	GCTCC	3 cut(s)	4, 141, 541
Lsp1109I	GCAGC	1 cut(s)	707
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	4 cut(s)	51, 258, 348, 545
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	3 cut(s)	207, 548, 995
MalI	GATC	7 cut(s)	166, 380, 594, 693, 831, 879, 1050
MboI	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
MboII	GAAGA	6 cut(s)	33, 54, 189, 192, 487, 778
MflI	RGATCY	3 cut(s)	164, 592, 877
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	3 cut(s)	160, 269, 429
MluCI	AATT	3 cut(s)	499, 534, 1076
MluI	ACGCGT	1 cut(s)	624
MluNI	TGGCCA	3 cut(s)	160, 269, 429
MlyI	GAGTC	1 cut(s)	1070
Mox20I	TGGCCA	3 cut(s)	160, 269, 429
MroI	TCCGGA	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	1016
MscI	TGGCCA	3 cut(s)	160, 269, 429
MseI	TTAA	4 cut(s)	24, 819, 843, 855
MslI	CAYNNNNRTG	1 cut(s)	672
Msp20I	TGGCCA	3 cut(s)	160, 269, 429
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	4 cut(s)	157, 162, 426, 488
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	4 cut(s)	157, 162, 426, 488
MvnI	CGCG	2 cut(s)	234, 626
MwoI	GCNNNNNNNGC	2 cut(s)	254, 300
NdeII	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
NlaIII	CATG	6 cut(s)	623, 646, 677, 727, 942, 968
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	207
NspI	RCATGY	2 cut(s)	646, 968
PagI	TCATGA	1 cut(s)	673
PasI	CCCWGGG	1 cut(s)	487
PciI	ACATGT	1 cut(s)	964
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	3 cut(s)	458, 664, 806
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	98, 256, 519, 722
PleI	GAGTC	1 cut(s)	1069
PpsI	GAGTC	1 cut(s)	1069
PscI	ACATGT	1 cut(s)	964
Psp124BI	GAGCTC	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	1015
Psp6I	CCWGG	4 cut(s)	155, 160, 424, 486
PspGI	CCWGG	4 cut(s)	155, 160, 424, 486
PspN4I	GGNNCC	1 cut(s)	484
PsuI	RGATCY	3 cut(s)	164, 592, 877
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	4 cut(s)	34, 147, 563, 923
RsaNI	GTAC	4 cut(s)	33, 146, 562, 922
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	24, 819, 843, 855
SatI	GCNGC	4 cut(s)	97, 255, 518, 721
Sau3AI	GATC	7 cut(s)	164, 378, 592, 691, 829, 877, 1048
SchI	GAGTC	1 cut(s)	1070
ScrFI	CCNGG	4 cut(s)	157, 162, 426, 488
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	894, 1058
SmoI	CTYRAG	2 cut(s)	894, 1058
Sse9I	AATT	3 cut(s)	499, 534, 1076
SsiI	CCGC	5 cut(s)	97, 218, 254, 468, 518
SspMI	CTAG	4 cut(s)	51, 258, 348, 545
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	4 cut(s)	155, 160, 424, 486
TaaI	ACNGT	5 cut(s)	77, 104, 213, 283, 1031
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	4 cut(s)	456, 511, 694, 1044
TasI	AATT	3 cut(s)	499, 534, 1076
TatI	WGTACW	4 cut(s)	32, 145, 561, 921
TauI	GCSGC	3 cut(s)	99, 257, 520
TfiI	GAWTC	3 cut(s)	458, 664, 806
Tru1I	TTAA	4 cut(s)	24, 819, 843, 855
Tru9I	TTAA	4 cut(s)	24, 819, 843, 855
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	2 cut(s)	779, 1025
TspGWI	ACGGA	2 cut(s)	714, 803
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	347
XceI	RCATGY	2 cut(s)	646, 968
XmnI	GAANNNNTTC	1 cut(s)	1016
XspI	CTAG	4 cut(s)	51, 258, 348, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.