AT1G57790

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013403
Physical Location & Seq
Reverse (-)
21404342 .. 21405956
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57790.1

Sequence Viewer

Length: 1059 bp
ATGAGCGTGAATACCAATGAAGGGTCCAAGAACCTGTGGAAGGATCTTCCTTTAGAGCTTCTGAGTTCAGTAATGACTTTTCTTGAAATCAAAGATAACGTAAGAGCTTCTGTTGTATGCAAATCGTGGTTCGAAGCCGCAGTTTCAGTTAGGGTCATTGACAAATCTCCTTGGCTCATGTACTTCCCTGAAACCAAGAACACTTACGACTTTTACGATCCATCGAACTGCAAGAAGTATACAATGGAGCTGCCTAAATCGTTAGTTGGCTTTATTGTTCGTTACTCGAAAGATGGATGGTTACTTATGAGCCAAGAAGATTCATCACACTTTGTCTTGTTCAATCCATTTACTATGGATGTTGTAGCCTTGCCTTTTCTTCACTTGTTCACTTATTATCAGTTAGTGGGTTTCTCTTCTGCTCCTACATCTAGTGAGTGTGTGGTGTTTACTATCAAGGATTATGATCCAGGCCATGTCACTATCCGTACTTGGAGTCCGGGTCAAACGATGTGGACTTCAATGCAGGTTGAGTCTCAATTCCTTGATGTTGATCATAACAATGTTGTTTTCTCAAATGGCGTGTTTTACTGTCTTAACCAAAGAAACCACGTTGCGGTTTTTGATCCGTCTTTACGTACATGGAATGTTCTTGATGTACCGCCACCTAGATGTCCCGATGATAAGAGTTGGAATGAAGGAAAGTTCATGGTAGGTTATAAAGGTGACATACTTGTGATTCGTACATATGAAAATAAGGACCCTTTGGTGTTTAAACTCGATCTTACTCGAGGTATTTGGGAGGAGAAGGATACACTCGGTAGTTTAACTATTTTTGTGAGTAGGAAGTCATGTGAATCGAGAACATATGTTAAGGATGGGATGTTAAGGAATAGTGTATACTTCCCTGAGTTGTGTTACAATGAGAAACAAAGTGTGGTGTATTCGTTTGATGAAGGGAGGTACCACCTGCGAGAGCATGATCTTGATTGGGGAAAACAGCTTTCATCTGATAACATTTGGATCGAGCCTCCCAAGAACGCTTTTGAGCTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

352

Amino Acids

40.9

Weight (kDa)

5.36

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 13 - 48 2.3e-07 F-box-like
F-box PF00646 13 - 51 9.4e-07 F-box domain
Beta-prop_KIB1-4 PF03478 71 - 315 1.9e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57790
fragaria_vesca FvH4_6g18890
malus_domestica MD12G1025100.v1.1 MD14G1023800.v1.1
prunus_persica Prupe.7G109000_v2.0.a1
pyrus_communis pycom12g02460 pycom14g02290
rosa_chinensis RchiOBHm_Chr3g0473881
rosa_laevigata RLG00000023976
rosa_multiflora Rmu_sc0002414.1_g000044
rosa_roxburghii Rroxscaffold_6G00407700
rosa_rugosa Rorug03G0136200 Rorug03G0136300
rosa_samantha Rh3AG186800 Rh3BG215400 Rh3CG212100 Rh3DG211300
rosa_wichuraiana Rw3G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AarI CACCTGC 1 cut(s) 978
Acc36I ACCTGC 2 cut(s) 517, 978
Acc65I GGTACC 1 cut(s) 963
AccB1I GGYRCC 1 cut(s) 963
AccI GTMKAC 2 cut(s) 239, 900
AciI CCGC 3 cut(s) 138, 617, 662
AclWI GGATC 5 cut(s) 51, 212, 461, 620, 1031
AfaI GTAC 6 cut(s) 182, 490, 640, 660, 745, 965
AfiI CCNNNNNNNGG 3 cut(s) 21, 40, 616
AgsI TTSAA 3 cut(s) 86, 343, 522
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 5 cut(s) 58, 107, 250, 1003, 1051
AluI AGCT 5 cut(s) 58, 107, 250, 1003, 1051
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 5 cut(s) 51, 212, 461, 620, 1031
Ama87I CYCGRG 1 cut(s) 789
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 250
Asp718I GGTACC 1 cut(s) 963
AspS9I GGNCC 2 cut(s) 24, 760
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 737
AsuII TTCGAA 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 789
AvaII GGWCC 2 cut(s) 24, 760
BanI GGYRCC 1 cut(s) 963
BbvI GCAGC 1 cut(s) 237
BccI CCATC 4 cut(s) 229, 287, 291, 872
BciT130I CCWGG 1 cut(s) 471
BciVI GTATCC 1 cut(s) 805
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 3 cut(s) 432, 669, 1052
BfuAI ACCTGC 2 cut(s) 517, 978
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 2 cut(s) 138, 251
BlsI GCNGC 2 cut(s) 139, 252
Bme1390I CCNGG 2 cut(s) 471, 501
Bme18I GGWCC 2 cut(s) 24, 760
BmeT110I CYCGRG 1 cut(s) 789
BmgT120I GGNCC 2 cut(s) 24, 760
BmiI GGNNCC 3 cut(s) 25, 762, 965
BmrFI CCNGG 2 cut(s) 471, 501
Bpu14I TTCGAA 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 501
BsaAI YACGTR 1 cut(s) 638
BsaBI GATNNNNATC 2 cut(s) 465, 552
BsaJI CCNNGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 40, 616
Bse8I GATNNNNATC 2 cut(s) 465, 552
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 4 cut(s) 302, 364, 883, 888
BseJI GATNNNNATC 2 cut(s) 465, 552
BseLI CCNNNNNNNGG 3 cut(s) 21, 40, 616
BseMII CTCAG 2 cut(s) 53, 900
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 474
BshNI GGYRCC 1 cut(s) 963
BsiHKCI CYCGRG 1 cut(s) 789
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 3 cut(s) 21, 40, 616
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 789
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
BspACI CCGC 3 cut(s) 138, 617, 662
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 2 cut(s) 54, 901
BspLI GGNNCC 3 cut(s) 25, 762, 965
BspMI ACCTGC 2 cut(s) 517, 978
BspPI GGATC 5 cut(s) 51, 212, 461, 620, 1031
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 963
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
BssNAI GTATAC 2 cut(s) 240, 901
BssT1I CCWWGG 1 cut(s) 170
Bst1107I GTATAC 2 cut(s) 240, 901
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 638
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 62, 909
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 302, 364, 883, 888
BstKTI GATC 8 cut(s) 46, 220, 469, 556, 628, 784, 985, 1026
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 2 cut(s) 469, 499
BstSNI TACGTA 1 cut(s) 638
BstV1I GCAGC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZ17I GTATAC 2 cut(s) 240, 901
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 474
BtsCI GGATG 4 cut(s) 302, 364, 883, 888
BveI ACCTGC 2 cut(s) 517, 978
Cfr13I GGNCC 2 cut(s) 24, 760
Csp6I GTAC 6 cut(s) 181, 489, 639, 659, 744, 964
CspCI CAANNNNNGTGG 2 cut(s) 494, 529
CviAII CATG 6 cut(s) 178, 476, 642, 709, 852, 980
CviQI GTAC 6 cut(s) 181, 489, 639, 659, 744, 964
DdeI CTNAG 2 cut(s) 62, 909
DpnI GATC 8 cut(s) 45, 219, 468, 555, 627, 783, 984, 1025
DpnII GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
DraI TTTAAA 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
Eco105I TACGTA 1 cut(s) 638
Eco130I CCWWGG 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 24, 760
Eco88I CYCGRG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 6 cut(s) 181, 479, 645, 712, 855, 983
FaqI GGGAC 1 cut(s) 660
FatI CATG 6 cut(s) 177, 475, 641, 708, 851, 979
FauNDI CATATG 2 cut(s) 748, 868
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 2 cut(s) 239, 900
Fnu4HI GCNGC 2 cut(s) 138, 251
FokI GGATG 4 cut(s) 309, 371, 890, 895
Fsp4HI GCNGC 2 cut(s) 138, 251
FspBI CTAG 3 cut(s) 432, 669, 1052
GluI GCNGC 2 cut(s) 138, 251
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 500
Hin1II CATG 6 cut(s) 181, 479, 645, 712, 855, 983
HinfI GANTC 5 cut(s) 320, 496, 533, 739, 857
HpaII CCGG 1 cut(s) 500
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 5 cut(s) 240, 390, 450, 516, 901
Hpy188I TCNGA 2 cut(s) 63, 1012
Hpy188III TCNNGA 5 cut(s) 83, 653, 677, 861, 986
Hpy8I GTNNAC 5 cut(s) 240, 390, 450, 516, 901
HpyAV CCTTC 5 cut(s) 14, 34, 692, 802, 950
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4IV ACGT 3 cut(s) 99, 612, 637
HpyCH4V TGCA 3 cut(s) 120, 231, 526
HpyF3I CTNAG 2 cut(s) 62, 909
HpySE526I ACGT 3 cut(s) 99, 612, 637
Hsp92II CATG 6 cut(s) 181, 479, 645, 712, 855, 983
KpnI GGTACC 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
LmnI GCTCC 2 cut(s) 247, 427
LpnPI CCDG 8 cut(s) 47, 201, 456, 483, 512, 513, 921, 983
Lsp1109I GCAGC 1 cut(s) 237
MaeI CTAG 3 cut(s) 432, 669, 1052
MaeII ACGT 3 cut(s) 99, 612, 637
MaeIII GTNAC 5 cut(s) 281, 300, 478, 725, 917
MalI GATC 8 cut(s) 45, 219, 468, 555, 627, 783, 984, 1025
MboI GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
MboII GAAGA 4 cut(s) 38, 329, 371, 408
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 539
MlyI GAGTC 2 cut(s) 505, 542
MmeI TCCRAC 1 cut(s) 671
MnlI CCTC 4 cut(s) 785, 796, 954, 1041
MseI TTAA 6 cut(s) 597, 774, 827, 873, 887, 1057
MslI CAYNNNNRTG 3 cut(s) 561, 670, 734
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 2 cut(s) 471, 501
MssI GTTTAAAC 1 cut(s) 775
MvaI CCWGG 1 cut(s) 471
NciI CCSGG 1 cut(s) 501
NdeI CATATG 2 cut(s) 748, 868
NdeII GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
NlaIII CATG 6 cut(s) 181, 479, 645, 712, 855, 983
NlaIV GGNNCC 3 cut(s) 25, 762, 965
NmuCI GTSAC 2 cut(s) 478, 725
NspV TTCGAA 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 789
PaqCI CACCTGC 1 cut(s) 978
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 3 cut(s) 320, 739, 857
PkrI GCNGC 2 cut(s) 139, 252
PleI GAGTC 2 cut(s) 504, 541
PmeI GTTTAAAC 1 cut(s) 775
PpsI GAGTC 2 cut(s) 504, 541
Ppu21I YACGTR 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 760
PsiI TTATAA 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 760
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 25, 762, 965
PspPI GGNCC 2 cut(s) 24, 760
PspPPI RGGWCCY 1 cut(s) 760
PspXI VCTCGAGB 1 cut(s) 789
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 6 cut(s) 182, 490, 640, 660, 745, 965
RsaNI GTAC 6 cut(s) 181, 489, 639, 659, 744, 964
RseI CAYNNNNRTG 3 cut(s) 561, 670, 734
SaqAI TTAA 6 cut(s) 597, 774, 827, 873, 887, 1057
SatI GCNGC 2 cut(s) 138, 251
Sau3AI GATC 8 cut(s) 43, 217, 466, 553, 625, 781, 982, 1023
Sau96I GGNCC 2 cut(s) 24, 760
SchI GAGTC 2 cut(s) 505, 542
ScrFI CCNGG 2 cut(s) 471, 501
Sfr274I CTCGAG 1 cut(s) 789
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 2 cut(s) 24, 760
SlaI CTCGAG 1 cut(s) 789
SmiMI CAYNNNNRTG 3 cut(s) 561, 670, 734
SmlI CTYRAG 1 cut(s) 789
SmoI CTYRAG 1 cut(s) 789
SnaBI TACGTA 1 cut(s) 638
Sse9I AATT 1 cut(s) 539
SsiI CCGC 3 cut(s) 138, 617, 662
SspMI CTAG 3 cut(s) 432, 669, 1052
StyD4I CCNGG 2 cut(s) 469, 499
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 593
TaiI ACGT 3 cut(s) 102, 615, 640
TaqI TCGA 7 cut(s) 132, 224, 287, 780, 790, 860, 1026
TasI AATT 1 cut(s) 539
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 3 cut(s) 320, 739, 857
Tru1I TTAA 6 cut(s) 597, 774, 827, 873, 887, 1057
Tru9I TTAA 6 cut(s) 597, 774, 827, 873, 887, 1057
TseFI GTSAC 2 cut(s) 478, 725
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 2 cut(s) 478, 725
TspDTI ATGAA 7 cut(s) 33, 312, 697, 711, 765, 969, 996
TspGWI ACGGA 2 cut(s) 476, 618
VpaK11BI GGWCC 2 cut(s) 24, 760
XagI CCTNNNNNAGG 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 789
XmiI GTMKAC 2 cut(s) 239, 900
XspI CTAG 3 cut(s) 432, 669, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.