Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013403

Physical Location & Seq

Genomic Coordinates Reverse (-)

30618605 .. 30620516

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACTGTCAGGAAGAGGAAGCTGAAACTGTTATCTGAAACAGCATCAACTGGTACAGGAAGAGCTAGATTCAGGAAGAATGAGAATTTGGAGCTTCAAACCTGGTCAGAGCTCCCCATAGAACTTGTGGAAATCATTGCATCTCGTTTATCTCTAGAAGATAATATTCGAGCATCTGCTGTATGCAAGAGATGGCATTCAGCTGCCGTTTCTGTGCGGGTAGTCAACCGAGCACCCCTACTGATGTACTTTCCAAACTTTGGTAGCCTGTTTGACTTCTATGATCCATCACAGCGCAAAATCCACTCTATGGAGATTCCTCAGGTGATTGGGTCTAGGGTTTGCTACACCAAAGATGGTTGGTTGTTGCTATACAGACCCAAAACTTTCCGTGTGTTCTTTTTCAATCCTTTTACTCAGGAGGTGGTCAAGTTACCAAGATTTGAGTTGAATTATCAGATTGTTGCATTCTCTTCTGCCCCAACTTCTACAAGCTGCATGGTTTTTACCATAAAACATGTCAATCCCACAGTTGTTGCTATTAGCACTTGTCATCCTGGGGCAGAACAGTGGACTACTGTTCAGTATCAAAACCGTTTGCCCTTTGTGAGTAGCATTTGGAACAAGCTTGTTTTCTGTAATGACCTCTTTTATTGTCAAAGCCTCACAGGTTGGGTGGGTGTATTCAACCCACATGAACGAACTTGGAGTGTCCTTTCAGTCCCTCCTCCGAAATGCCCCGAGAAATTTTTCGCTAAAAGTTGGTGGAAAGGTAAGTTTATGACTGAGAAGGATGGAGATATATTAGTTATATATACATGTTCTACTGAAACCCCAATTGCATTCAAGTTGGACCAGAGAAACATGGCTTGGGAAGAGCTGAAAACCCTAGATGGTGCGACTATTTTTGCTAGTTTCTTGACAACTCATGCAAACATTGACCTCCCTGCAATAAAGAGAAACAGTATTTACTTCTCTAAAGTTCGTTTTTATGGAAGGCAGTGCATATCATACTCACTTGTAGATGGTAGATATCATCCTCGCAATGAGTGCCATGACTGGGGAGAGCAAGATCCTTTCAAGACCATTTGGATTGAACCACCTAAAGACTTCTCAGGCTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

376

Amino Acids

43.47

Weight (kDa)

9.2

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	35 - 73	2.4e-08	F-box domain
F-box-like	PF12937	35 - 70	2.1e-07	F-box-like
Beta-prop_KIB1-4	PF03478	93 - 327	1.8e-27	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57790
fragaria_vesca	FvH4_6g18890
malus_domestica	MD12G1025100.v1.1 MD14G1023800.v1.1
prunus_persica	Prupe.7G109000_v2.0.a1
pyrus_communis	pycom12g02460 pycom14g02290
rosa_chinensis	RchiOBHm_Chr3g0473881
rosa_laevigata	RLG00000023976
rosa_multiflora	Rmu_sc0002414.1_g000044
rosa_roxburghii	Rroxscaffold_6G00407700
rosa_rugosa	Rorug03G0136200 Rorug03G0136300
rosa_samantha	Rh3AG186800 Rh3BG215400 Rh3CG212100 Rh3DG211300
rosa_wichuraiana	Rw3G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	260, 310
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	278, 1067
AcsI	RAATTY	2 cut(s)	85, 746
AfaI	GTAC	2 cut(s)	55, 248
AfiI	CCNNNNNNNGG	3 cut(s)	260, 310, 1060
AflIII	ACRYGT	2 cut(s)	517, 818
AgsI	TTSAA	8 cut(s)	98, 406, 451, 688, 847, 1081, 1097, 1123
AjnI	CCWGG	2 cut(s)	101, 556
AjuI	GAANNNNNNNTTGG	4 cut(s)	71, 103, 853, 885
AluBI	AGCT	8 cut(s)	22, 65, 94, 112, 203, 495, 628, 880
AluI	AGCT	8 cut(s)	22, 65, 94, 112, 203, 495, 628, 880
Alw21I	GWGCWC	2 cut(s)	114, 235
AlwI	GGATC	2 cut(s)	278, 1067
Ama87I	CYCGRG	1 cut(s)	740
ApeKI	GCWGC	2 cut(s)	203, 495
ApoI	RAATTY	2 cut(s)	85, 746
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	1 cut(s)	853
AxyI	CCTNAGG	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	114, 235
BbvI	GCAGC	2 cut(s)	190, 482
BccI	CCATC	6 cut(s)	186, 295, 350, 788, 887, 1019
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	103, 558
BfaI	CTAG	5 cut(s)	66, 155, 336, 890, 912
BisI	GCNGC	2 cut(s)	204, 496
BlsI	GCNGC	2 cut(s)	205, 497
Bme1390I	CCNGG	2 cut(s)	103, 558
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	853
BmrFI	CCNGG	2 cut(s)	103, 558
BmrI	ACTGGG	1 cut(s)	1069
BmsI	GCATC	3 cut(s)	53, 149, 182
BmuI	ACTGGG	1 cut(s)	1069
BsaJI	CCNNGG	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 310, 1060
Bse1I	ACTGG	2 cut(s)	55, 1064
Bse21I	CCTNAGG	1 cut(s)	321
Bse3DI	GCAATG	2 cut(s)	135, 1051
BseBI	CCWGG	2 cut(s)	103, 558
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	3 cut(s)	553, 799, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	260, 310, 1060
BseMI	GCAATG	2 cut(s)	135, 1051
BseMII	CTCAG	4 cut(s)	335, 431, 777, 1128
BseNI	ACTGG	2 cut(s)	55, 1064
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	190, 482
BsiHKAI	GWGCWC	2 cut(s)	114, 235
BsiHKCI	CYCGRG	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	3 cut(s)	260, 310, 1060
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	3 cut(s)	196, 467, 842
BsoBI	CYCGRG	1 cut(s)	740
Bsp1286I	GDGCHC	2 cut(s)	114, 235
Bsp143I	GATC	2 cut(s)	283, 1072
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	4 cut(s)	334, 430, 778, 1127
BspPI	GGATC	2 cut(s)	278, 1067
BspQI	GCTCTTC	2 cut(s)	55, 870
BsrDI	GCAATG	2 cut(s)	135, 1051
BsrI	ACTGG	2 cut(s)	55, 1064
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	2 cut(s)	283, 1072
Bst2UI	CCWGG	2 cut(s)	103, 558
Bst4CI	ACNGT	7 cut(s)	7, 30, 532, 570, 580, 596, 965
Bst6I	CTCTTC	4 cut(s)	8, 55, 478, 870
BstAPI	GCANNNNNTGC	1 cut(s)	1050
BstDEI	CTNAG	4 cut(s)	321, 417, 786, 1114
BstF5I	GGATG	3 cut(s)	553, 799, 1036
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	286, 1075
BstMBI	GATC	2 cut(s)	283, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	1050
BstNI	CCWGG	2 cut(s)	103, 558
BstNSI	RCATGY	2 cut(s)	521, 822
BstSCI	CCNGG	2 cut(s)	101, 556
BstV1I	GCAGC	2 cut(s)	190, 482
BstX2I	RGATCY	1 cut(s)	1072
BstYI	RGATCY	1 cut(s)	1072
Bsu36I	CCTNAGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	553, 799, 1036
BtsI	GCAGTG	1 cut(s)	1007
BtsIMutI	CAGTG	2 cut(s)	575, 1007
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	853
CsiI	ACCWGGT	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	54, 247
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	7 cut(s)	499, 518, 695, 819, 865, 929, 1055
CviQI	GTAC	2 cut(s)	54, 247
DdeI	CTNAG	4 cut(s)	321, 417, 786, 1114
DpnI	GATC	2 cut(s)	285, 1074
DpnII	GATC	2 cut(s)	283, 1072
Eam1104I	CTCTTC	4 cut(s)	8, 55, 478, 870
EarI	CTCTTC	4 cut(s)	8, 55, 478, 870
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	1034
Eco47I	GGWCC	1 cut(s)	853
Eco53kI	GAGCTC	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	101, 556
EcoRV	GATATC	1 cut(s)	1034
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	7 cut(s)	502, 521, 698, 822, 868, 932, 1058
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	7 cut(s)	498, 517, 694, 818, 864, 928, 1054
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	204, 496
FokI	GGATG	3 cut(s)	540, 806, 1023
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	204, 496
FspBI	CTAG	5 cut(s)	66, 155, 336, 890, 912
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	2 cut(s)	204, 496
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	502, 521, 698, 822, 868, 932, 1058
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	2 cut(s)	69, 316
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	226, 573
Hpy188I	TCNGA	4 cut(s)	37, 109, 459, 732
Hpy188III	TCNNGA	6 cut(s)	10, 73, 155, 419, 919, 1081
Hpy8I	GTNNAC	2 cut(s)	226, 573
HpyAV	CCTTC	2 cut(s)	784, 990
HpyCH4III	ACNGT	7 cut(s)	7, 30, 532, 570, 580, 596, 965
HpyCH4V	TGCA	8 cut(s)	140, 186, 467, 498, 842, 932, 950, 1005
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1050
HpyF3I	CTNAG	4 cut(s)	321, 417, 786, 1114
Hsp92II	CATG	7 cut(s)	502, 521, 698, 822, 868, 932, 1058
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	283, 1072
LguI	GCTCTTC	2 cut(s)	55, 870
LmnI	GCTCC	2 cut(s)	91, 117
Lsp1109I	GCAGC	2 cut(s)	190, 482
LweI	GCATC	3 cut(s)	53, 149, 182
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	5 cut(s)	66, 155, 336, 890, 912
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	2 cut(s)	285, 1074
MboI	GATC	2 cut(s)	283, 1072
MboII	GAAGA	6 cut(s)	25, 72, 88, 170, 465, 887
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	1 cut(s)	1072
MhlI	GDGCHC	2 cut(s)	114, 235
MluCI	AATT	4 cut(s)	85, 451, 746, 837
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	9 cut(s)	9, 330, 415, 656, 674, 735, 738, 953, 1050
MroXI	GAANNNNTTC	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	103, 558
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	3 cut(s)	196, 467, 842
MvaI	CCWGG	2 cut(s)	103, 558
MwoI	GCNNNNNNNGC	1 cut(s)	1050
NdeII	GATC	2 cut(s)	283, 1072
NlaIII	CATG	7 cut(s)	502, 521, 698, 822, 868, 932, 1058
NspI	RCATGY	2 cut(s)	521, 822
PciI	ACATGT	2 cut(s)	517, 818
PciSI	GCTCTTC	2 cut(s)	55, 870
PctI	GAATGC	3 cut(s)	196, 467, 842
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	69, 316
PflMI	CCANNNNNTGG	2 cut(s)	260, 310
PkrI	GCNGC	2 cut(s)	205, 497
PscI	ACATGT	2 cut(s)	517, 818
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	101, 556
PspGI	CCWGG	2 cut(s)	101, 556
PspPI	GGNCC	1 cut(s)	853
PsuI	RGATCY	1 cut(s)	1072
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	55, 248
RsaNI	GTAC	2 cut(s)	54, 247
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	2 cut(s)	55, 870
SatI	GCNGC	2 cut(s)	204, 496
Sau3AI	GATC	2 cut(s)	283, 1072
Sau96I	GGNCC	1 cut(s)	853
ScrFI	CCNGG	2 cut(s)	103, 558
SduI	GDGCHC	2 cut(s)	114, 235
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	53, 149, 182
SinI	GGWCC	1 cut(s)	853
Sse9I	AATT	4 cut(s)	85, 451, 746, 837
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	5 cut(s)	66, 155, 336, 890, 912
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	101, 556
TaaI	ACNGT	7 cut(s)	7, 30, 532, 570, 580, 596, 965
TaqI	TCGA	1 cut(s)	169
TasI	AATT	4 cut(s)	85, 451, 746, 837
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	69, 316
TscAI	CASTG	2 cut(s)	575, 1007
TseI	GCWGC	2 cut(s)	203, 495
TspDTI	ATGAA	1 cut(s)	711
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	575, 1007
Van91I	CCANNNNNTGG	2 cut(s)	260, 310
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	2 cut(s)	85, 746
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	2 cut(s)	521, 822
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	5 cut(s)	66, 155, 336, 890, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.