Prupe.7G109000_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013403
Physical Location & Seq
Reverse (-)
13713010 .. 13715551
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G109000.1

Sequence Viewer

Length: 1131 bp
ATGGCCGGGAGAAAGAGGAAGCTGAAATCGTTAGCTGAAACCATCACAAACAGTAAAAGAAGAGTAAGCAAGGAGAAAAGGGAGAAACTGGAGCTACAGACTTGGTCTGACCTTCCTACAGAACTTTTGGAACTCATTGTGTCTCGTTTAGCTCTGAAGGATAATATTCGTGTATCTGTTGTATGCAAGAGATGGCACTCAGCTGCCATTTCTGTGCGGGTGGTCAACCAGTCGCCATTGCTTATGTACTTTCCGAAATTTGGTGACCTGTACGAATTCTATGACCCCTCGCAGCGCAAAATCTACTCCTTAGAGTTACCTGAGCTGACTGGGTCTAGGATTTGCTACACCAAAGATGGTTGGCTATTGCTATACAGACCCAGATCGCACCGTGTGTTCTTCTTTAATCCTTTTACTCGCAAGATGATAAAGGTACCAAGATTCGAGTTGACGTATCAGATAGTTGCATTTTCTTGTGCCCCAACTTCTGCCAGCTGCATACTTTTTACAGTAAAACACATCAGTCCCACAATTGTTGCTATTAGCACTTGCCGTCCTGGGGAAAGAGAGTGGACGACTGTTAATGTCCAGAATCGTTTGCCCTTTGTGAGTAGCATTTGGAACAAGCTTGTTTTCTGCAATGGACTCTTTTATTGTCTAAGCCTCACCGGTTGGCTAGGGGTATTCAACCCCCAGGAACGCACTTGGAGTGTTCTTGCTGTTCCTCCACCCAAATGCCCCGAGAACTTTTTTGCCAAAAATTGGTGGAAAGGCAAGTTTATGGCTGAGCATAACGGAGACATATTAGTGATATATACATGTTCTAGTGAAAACCCAATTATATTTAAGCTGGATCAGACGAGGATGGTTTGGGAGGAAATGAAAACCCTTGATGGTGTGACTCTGTTTGCGAGTTTCTTGTCATCTCATTCAAGAACTGACCTCCCCGGAATAATGAGAAACAGTGTCTACTTCTCTAAAGTTCGTTTCTATGGAAGGTGTTGCATATCTTACTCTCTCGACGATTGTAGATACCATCCTCGCAAGCAGTGTCATGACTGGGGAGAGCAAGATCCTTTTAAGAACATTTGGATTGAAGCACCTCAAGACTTCTTAACCTTGAATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

377

Amino Acids

44.02

Weight (kDa)

9.4

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57790
fragaria_vesca FvH4_6g18890
malus_domestica MD12G1025100.v1.1 MD14G1023800.v1.1
prunus_persica Prupe.7G109000_v2.0.a1
pyrus_communis pycom12g02460 pycom14g02290
rosa_chinensis RchiOBHm_Chr3g0473881
rosa_laevigata RLG00000023976
rosa_multiflora Rmu_sc0002414.1_g000044
rosa_roxburghii Rroxscaffold_6G00407700
rosa_rugosa Rorug03G0136200 Rorug03G0136300
rosa_samantha Rh3AG186800 Rh3BG215400 Rh3CG212100 Rh3DG211300
rosa_wichuraiana Rw3G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 762
AccI GTMKAC 1 cut(s) 969
AciI CCGC 1 cut(s) 217
AclWI GGATC 2 cut(s) 861, 1067
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 257, 275
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 3 cut(s) 248, 272, 435
AfiI CCNNNNNNNGG 4 cut(s) 260, 559, 762, 1125
AflIII ACRYGT 1 cut(s) 818
AgeI ACCGGT 1 cut(s) 668
AgsI TTSAA 4 cut(s) 688, 933, 1097, 1123
AjnI CCWGG 2 cut(s) 556, 693
AluBI AGCT 9 cut(s) 22, 35, 94, 152, 203, 325, 495, 628, 850
AluI AGCT 9 cut(s) 22, 35, 94, 152, 203, 325, 495, 628, 850
Alw26I GTCTC 2 cut(s) 147, 792
AlwI GGATC 2 cut(s) 861, 1067
Ama87I CYCGRG 1 cut(s) 740
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 203, 292, 495
ApoI RAATTY 2 cut(s) 257, 275
AsiGI ACCGGT 1 cut(s) 668
Asp718I GGTACC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 297
AsuC2I CCSGG 2 cut(s) 7, 948
AsuHPI GGTGA 2 cut(s) 275, 658
AvaI CYCGRG 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 433
BbvI GCAGC 3 cut(s) 190, 304, 482
BccI CCATC 6 cut(s) 50, 186, 350, 859, 887, 1044
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 2 cut(s) 558, 695
BcnI CCSGG 2 cut(s) 7, 948
BcoDI GTCTC 2 cut(s) 147, 792
BfaI CTAG 3 cut(s) 336, 677, 825
BfmI CTRYAG 2 cut(s) 95, 117
BisI GCNGC 3 cut(s) 204, 293, 496
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 3 cut(s) 205, 294, 497
Bme1390I CCNGG 4 cut(s) 7, 558, 695, 948
BmeT110I CYCGRG 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 4 cut(s) 7, 558, 695, 948
BmrI ACTGGG 2 cut(s) 339, 1069
BmuI ACTGGG 2 cut(s) 339, 1069
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 1089
BpuMI CCSGG 2 cut(s) 7, 948
BsaJI CCNNGG 3 cut(s) 557, 693, 946
BsaWI WCCGGW 1 cut(s) 668
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 559, 762, 1125
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 4 cut(s) 93, 229, 334, 1064
Bse3DI GCAATG 2 cut(s) 236, 646
BseBI CCWGG 2 cut(s) 558, 695
BseDI CCNNGG 3 cut(s) 557, 693, 946
BseGI GGATG 2 cut(s) 870, 1036
BseLI CCNNNNNNNGG 4 cut(s) 260, 559, 762, 1125
BseMI GCAATG 2 cut(s) 236, 646
BseMII CTCAG 3 cut(s) 213, 312, 777
BseNI ACTGG 4 cut(s) 93, 229, 334, 1064
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 3 cut(s) 190, 304, 482
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 668
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 3 cut(s) 6, 669, 948
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 4 cut(s) 260, 559, 762, 1125
BsmAI GTCTC 2 cut(s) 147, 792
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 3 cut(s) 383, 853, 1072
Bsp1720I GCTNAGC 1 cut(s) 786
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 212, 313, 778
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 2 cut(s) 861, 1067
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 2 cut(s) 236, 646
BsrFI RCCGGY 1 cut(s) 668
BsrI ACTGG 4 cut(s) 93, 229, 334, 1064
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 3 cut(s) 557, 693, 946
BssMI GATC 3 cut(s) 383, 853, 1072
Bst2UI CCWGG 2 cut(s) 558, 695
Bst4CI ACNGT 5 cut(s) 53, 392, 511, 580, 965
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 493, 1046
BstDEI CTNAG 5 cut(s) 199, 310, 321, 659, 786
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 2 cut(s) 870, 1036
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 386, 856, 1075
BstMAI GTCTC 2 cut(s) 147, 792
BstMBI GATC 3 cut(s) 383, 853, 1072
BstNI CCWGG 2 cut(s) 558, 695
BstNSI RCATGY 1 cut(s) 822
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 4 cut(s) 5, 556, 693, 946
BstSFI CTRYAG 2 cut(s) 95, 117
BstSLI GKGCMC 1 cut(s) 481
BstV1I GCAGC 3 cut(s) 190, 304, 482
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 870, 1036
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 2 cut(s) 970, 1055
Cac8I GCNNGC 2 cut(s) 493, 1046
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 668
Csp6I GTAC 3 cut(s) 247, 271, 434
CspAI ACCGGT 1 cut(s) 668
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 2 cut(s) 819, 1055
CviQI GTAC 3 cut(s) 247, 271, 434
DdeI CTNAG 5 cut(s) 199, 310, 321, 659, 786
DpnI GATC 3 cut(s) 385, 855, 1074
DpnII GATC 3 cut(s) 383, 853, 1072
DraIII CACNNNGTG 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 740
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 556, 693
FaeI CATG 2 cut(s) 822, 1058
FaqI GGGAC 1 cut(s) 510
FatI CATG 2 cut(s) 818, 1054
FauI CCCGC 1 cut(s) 210
FblI GTMKAC 1 cut(s) 969
Fnu4HI GCNGC 3 cut(s) 204, 293, 496
FokI GGATG 2 cut(s) 877, 1023
Fsp4HI GCNGC 3 cut(s) 204, 293, 496
FspBI CTAG 3 cut(s) 336, 677, 825
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 204, 293, 496
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 6, 669, 948
HhaI GCGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 822, 1058
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 226, 450
HindII GTYRAC 2 cut(s) 226, 450
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 4 cut(s) 441, 592, 645, 901
HpaII CCGG 3 cut(s) 6, 669, 948
HphI GGTGA 2 cut(s) 275, 658
Hpy166II GTNNAC 4 cut(s) 226, 450, 573, 970
Hpy188I TCNGA 5 cut(s) 109, 156, 255, 459, 858
Hpy188III TCNNGA 5 cut(s) 589, 933, 1019, 1055, 1106
Hpy8I GTNNAC 4 cut(s) 226, 450, 573, 970
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 3 cut(s) 122, 151, 990
HpyCH4III ACNGT 5 cut(s) 53, 392, 511, 580, 965
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 5 cut(s) 186, 467, 498, 639, 1005
HpyF3I CTNAG 5 cut(s) 199, 310, 321, 659, 786
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 2 cut(s) 822, 1058
HspAI GCGC 1 cut(s) 295
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 3 cut(s) 383, 853, 1072
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 3 cut(s) 190, 304, 482
MaeI CTAG 3 cut(s) 336, 677, 825
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 3 cut(s) 263, 315, 898
MalI GATC 3 cut(s) 385, 855, 1074
MboI GATC 3 cut(s) 383, 853, 1072
MboII GAAGA 2 cut(s) 72, 391
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 6 cut(s) 257, 275, 531, 760, 837, 1123
MlyI GAGTC 2 cut(s) 639, 895
MnlI CCTC 9 cut(s) 9, 298, 674, 735, 855, 868, 953, 1050, 1113
MseI TTAA 5 cut(s) 405, 582, 846, 1080, 1115
MslI CAYNNNNRTG 3 cut(s) 212, 733, 806
MspA1I CMGCKG 2 cut(s) 203, 495
MspI CCGG 3 cut(s) 6, 669, 948
MspR9I CCNGG 4 cut(s) 7, 558, 695, 948
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 2 cut(s) 558, 695
NciI CCSGG 2 cut(s) 7, 948
NdeII GATC 3 cut(s) 383, 853, 1072
NlaIII CATG 2 cut(s) 822, 1058
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 2 cut(s) 263, 898
NspI RCATGY 1 cut(s) 822
PagI TCATGA 1 cut(s) 1054
PciI ACATGT 1 cut(s) 818
PfeI GAWTC 2 cut(s) 441, 592
PflFI GACNNNGTC 2 cut(s) 103, 331
PflMI CCANNNNNTGG 1 cut(s) 762
PinAI ACCGGT 1 cut(s) 668
PkrI GCNGC 3 cut(s) 205, 294, 497
PleI GAGTC 2 cut(s) 639, 895
PpsI GAGTC 2 cut(s) 639, 895
PscI ACATGT 1 cut(s) 818
Psp6I CCWGG 2 cut(s) 556, 693
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 556, 693
PspN4I GGNNCC 1 cut(s) 435
PsuI RGATCY 1 cut(s) 1072
PsyI GACNNNGTC 2 cut(s) 103, 331
PvuII CAGCTG 2 cut(s) 203, 495
RsaI GTAC 3 cut(s) 248, 272, 435
RsaNI GTAC 3 cut(s) 247, 271, 434
RseI CAYNNNNRTG 3 cut(s) 212, 733, 806
SaqAI TTAA 5 cut(s) 405, 582, 846, 1080, 1115
SatI GCNGC 3 cut(s) 204, 293, 496
Sau3AI GATC 3 cut(s) 383, 853, 1072
SchI GAGTC 2 cut(s) 639, 895
ScrFI CCNGG 4 cut(s) 7, 558, 695, 948
SduI GDGCHC 1 cut(s) 481
SfcI CTRYAG 2 cut(s) 95, 117
SmiMI CAYNNNNRTG 3 cut(s) 212, 733, 806
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
Sse9I AATT 6 cut(s) 257, 275, 531, 760, 837, 1123
SsiI CCGC 1 cut(s) 217
SspI AATATT 1 cut(s) 166
SspMI CTAG 3 cut(s) 336, 677, 825
StyD4I CCNGG 4 cut(s) 5, 556, 693, 946
TaaI ACNGT 5 cut(s) 53, 392, 511, 580, 965
TaiI ACGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 444, 1020
TasI AATT 6 cut(s) 257, 275, 531, 760, 837, 1123
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 441, 592
Tru1I TTAA 5 cut(s) 405, 582, 846, 1080, 1115
Tru9I TTAA 5 cut(s) 405, 582, 846, 1080, 1115
TscAI CASTG 2 cut(s) 970, 1055
TseFI GTSAC 2 cut(s) 263, 898
TseI GCWGC 3 cut(s) 203, 292, 495
Tsp45I GTSAC 2 cut(s) 263, 898
TspDTI ATGAA 1 cut(s) 896
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 2 cut(s) 970, 1055
Tth111I GACNNNGTC 2 cut(s) 103, 331
Van91I CCANNNNNTGG 1 cut(s) 762
XapI RAATTY 2 cut(s) 257, 275
XceI RCATGY 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 969
XspI CTAG 3 cut(s) 336, 677, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.