FvH4_6g18890

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013403
Physical Location & Seq
Forward (+)
12451227 .. 12453536
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18890.t1

Sequence Viewer

Length: 1128 bp
ATGACAGGGAGGAAGAGGAAGTTGAATTTGTTAACTGAAACAGCATCAACTAGTATGAGAACAGCTAGATACAGGAAAAAGGAGAATTTGGAGCTTCAAACCTGGTCAGAGCTCCCTATAGAACTTCTTGAAGTCATTTCGTCTCGTTTATCTCTAGATGATAATATTCAAGCATCTGCTGTATGCAAGAGATGGCATTCAGCTGCCGTTTCCGTGCGGGTAGTCAACCGGGCACCATTACTCATGTTCTTTCCCAAATTTGGTGACCTGTTTGAATTTTATGATCCATCACAGCGCAGATTCCACACTGTGGGCTTTCCTCAGCTGAATGGGTCTAGAGTTTGCTACACCAAAGGTGGCTGGTTATTGCTATACAGACCCAGAACTCTCCGTGTGTTCTTTTTCAATCCTTTTACTCAGGAGGTGGTCAAGTTACCAAGATTTGAGTTGGCGTATCAGATTGTTGCATTCTCTGCTCCGCCAACTTCTACAAGCTGCATTGTTTTTACCATAAAACATGTCAATCCCACAGTTGTTGCTATCAGCACTTGTCATCCTGGGGCACAAGAGTGGACAACTGTTCAATATCAAAACCGGTTACCCTTTGTCAGCAGCATTTGGAACAAGCTTGTTTTCTGCAATGACCTCTTTTACTGTCAAAGCCTCACAGGTTGGGTGGGTGTATTCAACCCACAAGAACGAACTTGGAGTGTCCTTTCAGTTCCTCCTCCCAAATGCCCCGAGAAATTTTTCGCTAAGAATTGGTGGAAGGGTAAGTTTATGACTGAAAAGGATGGAGATATATTAGTTGTATATACATGTTCTACTGAAAACCCGATTGTATTCAAGTTGGACCAGGGAAACATGGTCTGGGAAGAGATCAAAAACCTAGATGGTGCGACTGTTTTTGCTAGTTTCTTGACAACATATGCAAACACCAACCTCCCTGCAATAAAGAGAAATAGTATCTACTTCTCCAAAATTCGTTATTATGGAAGGCAGTGCATATCATACTCACTGGAGGATGGCAGATATCATCCTCGCAACGAGTGCCATGACTGGGGAGAGCAAGATCCTTTCAAGACCATCTGGATTGACCCACCAGAAGGCTTTGCAAGATTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

376

Amino Acids

43.54

Weight (kDa)

9.14

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 35 - 73 9.6e-08 F-box domain
F-box-like PF12937 35 - 70 7.6e-07 F-box-like
Beta-prop_KIB1-4 PF03478 93 - 327 9.2e-30 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57790
fragaria_vesca FvH4_6g18890
malus_domestica MD12G1025100.v1.1 MD14G1023800.v1.1
prunus_persica Prupe.7G109000_v2.0.a1
pyrus_communis pycom12g02460 pycom14g02290
rosa_chinensis RchiOBHm_Chr3g0473881
rosa_laevigata RLG00000023976
rosa_multiflora Rmu_sc0002414.1_g000044
rosa_roxburghii Rroxscaffold_6G00407700
rosa_rugosa Rorug03G0136200 Rorug03G0136300
rosa_samantha Rh3AG186800 Rh3BG215400 Rh3CG212100 Rh3DG211300
rosa_wichuraiana Rw3G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 2 cut(s) 217, 479
AclWI GGATC 2 cut(s) 278, 1067
AcsI RAATTY 6 cut(s) 25, 85, 257, 275, 746, 981
AdeI CACNNNGTG 1 cut(s) 310
AfiI CCNNNNNNNGG 4 cut(s) 260, 310, 1060, 1106
AflIII ACRYGT 2 cut(s) 517, 818
AgeI ACCGGT 1 cut(s) 594
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 3 cut(s) 101, 556, 855
AleI CACNNNNGTG 1 cut(s) 568
AluBI AGCT 7 cut(s) 65, 94, 112, 203, 325, 495, 628
AluI AGCT 7 cut(s) 65, 94, 112, 203, 325, 495, 628
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 2 cut(s) 278, 1067
Ama87I CYCGRG 1 cut(s) 740
ApeKI GCWGC 3 cut(s) 203, 495, 612
ApoI RAATTY 6 cut(s) 25, 85, 257, 275, 746, 981
AsiGI ACCGGT 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 749
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 853
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 1 cut(s) 853
BaeGI GKGCMC 2 cut(s) 235, 565
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 190, 482, 624
BccI CCATC 6 cut(s) 186, 295, 788, 887, 1019, 1094
BceAI ACGGC 1 cut(s) 191
BciT130I CCWGG 3 cut(s) 103, 558, 857
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 147
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 6 cut(s) 51, 66, 155, 336, 890, 912
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 3 cut(s) 204, 496, 613
BlsI GCNGC 3 cut(s) 205, 497, 614
Bme1390I CCNGG 4 cut(s) 103, 230, 558, 857
Bme18I GGWCC 1 cut(s) 853
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 853
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 4 cut(s) 103, 230, 558, 857
BmrI ACTGGG 1 cut(s) 1069
BmsI GCATC 2 cut(s) 53, 182
BmuI ACTGGG 1 cut(s) 1069
BpmI CTGGAG 1 cut(s) 1040
Bpu10I CCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 557, 856
BsaWI WCCGGW 1 cut(s) 594
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 310, 1060, 1106
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 2 cut(s) 1023, 1064
Bse3DI GCAATG 1 cut(s) 646
BseBI CCWGG 3 cut(s) 103, 558, 857
BseDI CCNNGG 2 cut(s) 557, 856
BseGI GGATG 4 cut(s) 553, 799, 1030, 1036
BseLI CCNNNNNNNGG 4 cut(s) 260, 310, 1060, 1106
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 2 cut(s) 335, 431
BseNI ACTGG 2 cut(s) 1023, 1064
BseRI GAGGAG 1 cut(s) 717
BseSI GKGCMC 2 cut(s) 235, 565
BseXI GCAGC 3 cut(s) 190, 482, 624
BshNI GGYRCC 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 2 cut(s) 229, 595
BslI CCNNNNNNNGG 4 cut(s) 260, 310, 1060, 1106
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmI GAATGC 2 cut(s) 196, 467
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 3 cut(s) 114, 235, 565
Bsp143I GATC 3 cut(s) 283, 879, 1072
BspACI CCGC 2 cut(s) 217, 479
BspCNI CTCAG 2 cut(s) 334, 430
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 2 cut(s) 278, 1067
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 646
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 2 cut(s) 1023, 1064
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 557, 856
BssMI GATC 3 cut(s) 283, 879, 1072
Bst2UI CCWGG 3 cut(s) 103, 558, 857
Bst4CI ACNGT 5 cut(s) 310, 532, 580, 656, 904
Bst6I CTCTTC 2 cut(s) 8, 870
BstAPI GCANNNNNTGC 2 cut(s) 473, 1050
BstDEI CTNAG 3 cut(s) 321, 417, 756
BstEII GGTNACC 2 cut(s) 263, 597
BstF5I GGATG 4 cut(s) 553, 799, 1030, 1036
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 286, 882, 1075
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 3 cut(s) 283, 879, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 473, 1050
BstNI CCWGG 3 cut(s) 103, 558, 857
BstNSI RCATGY 2 cut(s) 521, 822
BstPI GGTNACC 2 cut(s) 263, 597
BstSCI CCNGG 4 cut(s) 101, 228, 556, 855
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 2 cut(s) 235, 565
BstV1I GCAGC 3 cut(s) 190, 482, 624
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BtsCI GGATG 4 cut(s) 553, 799, 1030, 1036
BtsI GCAGTG 1 cut(s) 1007
BtsIMutI CAGTG 3 cut(s) 306, 1007, 1016
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 853
CsiI ACCWGGT 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 594
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 5 cut(s) 244, 518, 819, 865, 1055
DdeI CTNAG 3 cut(s) 321, 417, 756
DpnI GATC 3 cut(s) 285, 881, 1074
DpnII GATC 3 cut(s) 283, 879, 1072
DraIII CACNNNGTG 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 8, 870
EarI CTCTTC 2 cut(s) 8, 870
EciI GGCGGA 1 cut(s) 468
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 1034
Eco47I GGWCC 1 cut(s) 853
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 740
Eco91I GGTNACC 2 cut(s) 263, 597
EcoICRI GAGCTC 1 cut(s) 112
EcoO65I GGTNACC 2 cut(s) 263, 597
EcoRII CCWGG 3 cut(s) 101, 556, 855
EcoRV GATATC 1 cut(s) 1034
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 5 cut(s) 247, 521, 822, 868, 1058
FatI CATG 5 cut(s) 243, 517, 818, 864, 1054
FauI CCCGC 1 cut(s) 210
FauNDI CATATG 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 204, 496, 613
FokI GGATG 4 cut(s) 540, 806, 1023, 1037
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 204, 496, 613
FspBI CTAG 6 cut(s) 51, 66, 155, 336, 890, 912
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 204, 496, 613
GsuI CTGGAG 1 cut(s) 1040
HapII CCGG 2 cut(s) 229, 595
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 247, 521, 822, 868, 1058
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 33, 226
HindII GTYRAC 2 cut(s) 33, 226
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 2 cut(s) 300, 1119
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 2 cut(s) 229, 595
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 33, 226, 573
Hpy188I TCNGA 2 cut(s) 109, 459
Hpy188III TCNNGA 7 cut(s) 128, 155, 336, 419, 919, 1081, 1090
Hpy8I GTNNAC 3 cut(s) 33, 226, 573
HpyAV CCTTC 3 cut(s) 763, 990, 1100
HpyCH4III ACNGT 5 cut(s) 310, 532, 580, 656, 904
HpyCH4V TGCA 8 cut(s) 186, 467, 498, 639, 932, 950, 1005, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 1050
HpyF3I CTNAG 3 cut(s) 321, 417, 756
Hsp92II CATG 5 cut(s) 247, 521, 822, 868, 1058
HspAI GCGC 1 cut(s) 295
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 283, 879, 1072
LmnI GCTCC 3 cut(s) 91, 117, 481
Lsp1109I GCAGC 3 cut(s) 190, 482, 624
LweI GCATC 2 cut(s) 53, 182
MabI ACCWGGT 1 cut(s) 101
MaeI CTAG 6 cut(s) 51, 66, 155, 336, 890, 912
MaeIII GTNAC 3 cut(s) 263, 432, 597
MalI GATC 3 cut(s) 285, 881, 1074
MboI GATC 3 cut(s) 283, 879, 1072
MboII GAAGA 2 cut(s) 25, 887
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 3 cut(s) 114, 235, 565
MluCI AATT 7 cut(s) 25, 85, 257, 275, 746, 760, 981
MmeI TCCRAC 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 749
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 568
MspA1I CMGCKG 2 cut(s) 203, 325
MspI CCGG 2 cut(s) 229, 595
MspR9I CCNGG 4 cut(s) 103, 230, 558, 857
Mva1269I GAATGC 2 cut(s) 196, 467
MvaI CCWGG 3 cut(s) 103, 558, 857
MwoI GCNNNNNNNGC 2 cut(s) 473, 1050
NciI CCSGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 928
NdeII GATC 3 cut(s) 283, 879, 1072
NlaIII CATG 5 cut(s) 247, 521, 822, 868, 1058
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 2 cut(s) 521, 822
OliI CACNNNNGTG 1 cut(s) 568
PciI ACATGT 2 cut(s) 517, 818
PctI GAATGC 2 cut(s) 196, 467
PdmI GAANNNNTTC 1 cut(s) 749
PfeI GAWTC 2 cut(s) 300, 1119
PflMI CCANNNNNTGG 1 cut(s) 310
PinAI ACCGGT 1 cut(s) 594
PkrI GCNGC 3 cut(s) 205, 497, 614
PscI ACATGT 2 cut(s) 517, 818
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 101, 556, 855
PspEI GGTNACC 2 cut(s) 263, 597
PspGI CCWGG 3 cut(s) 101, 556, 855
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 853
PsuI RGATCY 1 cut(s) 1072
PvuII CAGCTG 2 cut(s) 203, 325
RseI CAYNNNNRTG 1 cut(s) 568
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 3 cut(s) 204, 496, 613
Sau3AI GATC 3 cut(s) 283, 879, 1072
Sau96I GGNCC 1 cut(s) 853
ScrFI CCNGG 4 cut(s) 103, 230, 558, 857
SduI GDGCHC 3 cut(s) 114, 235, 565
SexAI ACCWGGT 1 cut(s) 101
SfaNI GCATC 2 cut(s) 53, 182
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 568
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 7 cut(s) 25, 85, 257, 275, 746, 760, 981
SsiI CCGC 2 cut(s) 217, 479
SspI AATATT 1 cut(s) 166
SspMI CTAG 6 cut(s) 51, 66, 155, 336, 890, 912
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 101, 228, 556, 855
TaaI ACNGT 5 cut(s) 310, 532, 580, 656, 904
TaqI TCGA 1 cut(s) 1122
TasI AATT 7 cut(s) 25, 85, 257, 275, 746, 760, 981
TfiI GAWTC 2 cut(s) 300, 1119
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 3 cut(s) 313, 1007, 1023
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 203, 495, 612
Tsp45I GTSAC 1 cut(s) 263
TspGWI ACGGA 2 cut(s) 202, 380
TspRI CASTG 3 cut(s) 313, 1007, 1023
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 853
XapI RAATTY 6 cut(s) 25, 85, 257, 275, 746, 981
XbaI TCTAGA 2 cut(s) 154, 335
XceI RCATGY 2 cut(s) 521, 822
XmnI GAANNNNTTC 1 cut(s) 749
XspI CTAG 6 cut(s) 51, 66, 155, 336, 890, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.