Rorug03G0136200

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013403
Physical Location & Seq
Forward (+)
11179208 .. 11180954
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0136200.1

Sequence Viewer

Length: 708 bp
ATGTCATATGTGATCGAAGTGTTAGGTGCAAGAGATGGGGCTCAACTCATTCTAGTAAACAACTGCAATGAAAGCATATGGCCTGGTATACTTGGAGGTGCAGGCCTAGCCACCCCCCAAAGCGGCGGTTTCCATCTTGGAAGTGGTGAGGAAGTGGTTCTTGATGTGCCTGAAAAATGGTCAGGAAGGATATGGGGAAGGCAGGGTTGCTCCTTTGACAGTAATGGAAAGGGTAACTGTGAAACCGGTGACTGTTTTGGCCAATTGCATTGCCAAGGAAAAGGCGGTATTCCCCCAGCAACTGTGGTGGAAATGACACTTGGATCATCAAATTCACCCCTCCATTTCTATGACGTGAGCTTGGTCGATGGCTTCAATTTGCCAGTGTCCATGAAACCTGTTGGGGGTGGAATAGGTTGTGGTGTTGCTTCGTGTGAAGTTGACTTGAACATTTGCTGCCCATCAGCTTTGGAAGTGAGGAGAGGAGGCAAGGTCGTGGGGTGTAAAAGTGCCTGCTTGGCTATGCAATCTGCCAAGTATTGCTGCACTGGAAACTATGCAAACCCAAACACTTGCAAGCCAACTCTTTTTGCTCATCTGTTTAAGGCTATATGCCCCAAGGCTTATAGCTATGCTTTTGATGACTCTTCAAGCCTTAACAGATGCAGGGCTTCGCGGTATGTCATCACTTTCTGCCCTCCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

235

Amino Acids

24.72

Weight (kDa)

6.84

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 20 - 233 6.1e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57790
fragaria_vesca FvH4_6g18890
malus_domestica MD12G1025100.v1.1 MD14G1023800.v1.1
prunus_persica Prupe.7G109000_v2.0.a1
pyrus_communis pycom12g02460 pycom14g02290
rosa_chinensis RchiOBHm_Chr3g0473881
rosa_laevigata RLG00000023976
rosa_multiflora Rmu_sc0002414.1_g000044
rosa_roxburghii Rroxscaffold_6G00407700
rosa_rugosa Rorug03G0136200 Rorug03G0136300
rosa_samantha Rh3AG186800 Rh3BG215400 Rh3CG212100 Rh3DG211300
rosa_wichuraiana Rw3G017080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AccII CGCG 1 cut(s) 676
AciI CCGC 4 cut(s) 123, 126, 285, 676
AclWI GGATC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 122, 404
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 376, 448, 651
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 82
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 3 cut(s) 360, 467, 630
AluI AGCT 3 cut(s) 360, 467, 630
AlwI GGATC 1 cut(s) 331
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 3 cut(s) 80, 103, 259
ApeKI GCWGC 2 cut(s) 456, 543
ApoI RAATTY 1 cut(s) 331
AsiGI ACCGGT 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 158, 260, 327
BalI TGGCCA 1 cut(s) 261
BanII GRGCYC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 443, 530
BccI CCATC 4 cut(s) 29, 141, 362, 469
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 2 cut(s) 53, 107
BglI GCCNNNNNGGC 1 cut(s) 518
BisI GCNGC 3 cut(s) 124, 457, 544
BlsI GCNGC 3 cut(s) 125, 458, 545
Bme1390I CCNGG 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 653
BsaJI CCNNGG 2 cut(s) 274, 618
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 404
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 383, 553
Bse3DI GCAATG 2 cut(s) 73, 268
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 274, 618
BseLI CCNNNNNNNGG 2 cut(s) 122, 404
BseMI GCAATG 2 cut(s) 73, 268
BseNI ACTGG 2 cut(s) 383, 553
BseRI GAGGAG 2 cut(s) 493, 498
BseXI GCAGC 2 cut(s) 443, 530
BseYI CCCAGC 1 cut(s) 295
BsgI GTGCAG 2 cut(s) 120, 529
Bsh1236I CGCG 1 cut(s) 676
BshFI GGCC 3 cut(s) 82, 105, 261
BshTI ACCGGT 1 cut(s) 245
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 2 cut(s) 122, 404
BsnI GGCC 3 cut(s) 82, 105, 261
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 12, 323
BspACI CCGC 4 cut(s) 123, 126, 285, 676
BspANI GGCC 3 cut(s) 82, 105, 261
BspFNI CGCG 1 cut(s) 676
BspPI GGATC 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 73, 268
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 383, 553
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 274, 618
BssMI GATC 2 cut(s) 12, 323
BssNAI GTATAC 1 cut(s) 89
BssT1I CCWWGG 2 cut(s) 274, 618
Bst1107I GTATAC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 4 cut(s) 221, 239, 254, 304
Bst6I CTCTTC 1 cut(s) 652
BstC8I GCNNGC 3 cut(s) 103, 514, 578
BstFNI CGCG 1 cut(s) 676
BstKTI GATC 2 cut(s) 15, 326
BstMBI GATC 2 cut(s) 12, 323
BstMWI GCNNNNNNNGC 3 cut(s) 72, 107, 518
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 2 cut(s) 443, 530
BstZ17I GTATAC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 82, 105, 261
BtrI CACGTC 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 390, 546
Cac8I GCNNGC 3 cut(s) 103, 514, 578
CaiI CAGNNNCTG 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 245
CspAI ACCGGT 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 1 cut(s) 391
DpnI GATC 2 cut(s) 14, 325
DpnII GATC 2 cut(s) 12, 323
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 274, 618
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 274, 618
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 2 cut(s) 274, 618
FaeI CATG 1 cut(s) 394
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 1 cut(s) 390
FauNDI CATATG 2 cut(s) 7, 77
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 124, 457, 544
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 124, 457, 544
FspBI CTAG 2 cut(s) 53, 107
GluI GCNGC 3 cut(s) 124, 457, 544
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 3 cut(s) 82, 105, 261
HapII CCGG 1 cut(s) 246
Hin1II CATG 1 cut(s) 394
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 1 cut(s) 644
HpaII CCGG 1 cut(s) 246
HphI GGTGA 3 cut(s) 158, 260, 327
Hpy166II GTNNAC 3 cut(s) 58, 89, 442
Hpy188III TCNNGA 2 cut(s) 161, 183
Hpy8I GTNNAC 3 cut(s) 58, 89, 442
HpyAV CCTTC 2 cut(s) 180, 192
HpyCH4III ACNGT 4 cut(s) 221, 239, 254, 304
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 9 cut(s) 29, 66, 101, 268, 526, 546, 560, 576, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 107, 518
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 2 cut(s) 12, 323
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 2 cut(s) 443, 530
LweI GCATC 1 cut(s) 653
MaeI CTAG 2 cut(s) 53, 107
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 233, 248
MalI GATC 2 cut(s) 14, 325
MboI GATC 2 cut(s) 12, 323
MboII GAAGA 1 cut(s) 639
MfeI CAATTG 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 3 cut(s) 263, 331, 376
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 1 cut(s) 638
MnlI CCTC 7 cut(s) 89, 142, 350, 471, 476, 479, 708
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 261
MseI TTAA 2 cut(s) 603, 657
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 261
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 3 cut(s) 72, 107, 518
NdeI CATATG 2 cut(s) 7, 77
NdeII GATC 2 cut(s) 12, 323
NlaIII CATG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 3 cut(s) 125, 458, 545
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 2 cut(s) 603, 657
SatI GCNGC 3 cut(s) 124, 457, 544
Sau3AI GATC 2 cut(s) 12, 323
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 43
SetI ASST 9 cut(s) 28, 100, 357, 362, 400, 418, 469, 495, 632
SfaNI GCATC 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 3 cut(s) 263, 331, 376
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 4 cut(s) 123, 126, 285, 676
SspMI CTAG 2 cut(s) 53, 107
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 2 cut(s) 274, 618
TaaI ACNGT 4 cut(s) 221, 239, 254, 304
TaiI ACGT 1 cut(s) 357
TaqI TCGA 2 cut(s) 15, 366
TasI AATT 3 cut(s) 263, 331, 376
TauI GCSGC 1 cut(s) 126
Tru1I TTAA 2 cut(s) 603, 657
Tru9I TTAA 2 cut(s) 603, 657
TscAI CASTG 2 cut(s) 390, 553
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 456, 543
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 84, 407
TspRI CASTG 2 cut(s) 390, 553
XapI RAATTY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 53, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.