Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Forward (+)

21868190 .. 21868708

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G59530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTTTATACTAATATGGAGACGGTTCATAACTGCTTCAATGATGCTACGATAACCGGTGATGAAATCATTGATATATTGGCGTTTCTTCAATCAGACGAGTCGGACAATCCAAGCGGTATAAACGAGGTAGTACCGGTGGATGATAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCCAAGAGATCGAGGATGAAAAAGAAGAAACGTTTTGAAGAGTTAACTGAAGAGGTGAACCGGTTAAACATAAGAAATCAGGAGCTGAAAAACCGGTTAGCTAATGTTGTTAGTTGTGGTAATTTTATATCTAGGGAGAATAACCGGTTGAAAACCGAATCGGTTTGCCTTGAGATAAGGCTTTTAGAGTTGTACCGTTTTTTAGTGGCCATGCAATCGCCAATCTCAACGAGTGTAAATTACATCACAACGCTCGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

148

Amino Acids

17.23

Weight (kDa)

7.69

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	48 - 95	3.1e-09	Basic region leucine zipper
bZIP_1	PF00170	49 - 96	9.7e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclI	AACGTT	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	183, 390
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	135, 377
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgeI	ACCGGT	5 cut(s)	56, 136, 243, 276, 327
AgsI	TTSAA	4 cut(s)	40, 92, 221, 334
AluBI	AGCT	2 cut(s)	268, 284
AluI	AGCT	2 cut(s)	268, 284
Alw26I	GTCTC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	183, 390
AsiGI	ACCGGT	5 cut(s)	56, 136, 243, 276, 327
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	71, 250
AvaI	CYCGRG	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	176
BsaWI	WCCGGW	5 cut(s)	56, 136, 243, 276, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	5 cut(s)	56, 136, 243, 276, 327
BseGI	GGATG	2 cut(s)	148, 204
BseLI	CCNNNNNNNGG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	185, 392
BshTI	ACCGGT	5 cut(s)	56, 136, 243, 276, 327
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	6 cut(s)	57, 137, 175, 244, 277, 328
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	185, 392
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	185, 392
BsrFI	RCCGGY	5 cut(s)	56, 136, 243, 276, 327
BssAI	RCCGGY	5 cut(s)	56, 136, 243, 276, 327
BssMI	GATC	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	25, 380
Bst6I	CTCTTC	3 cut(s)	146, 216, 228
BstF5I	GGATG	2 cut(s)	148, 204
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	185, 392
BtsCI	GGATG	2 cut(s)	148, 204
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr10I	RCCGGY	5 cut(s)	56, 136, 243, 276, 327
Csp6I	GTAC	2 cut(s)	134, 376
CspAI	ACCGGT	5 cut(s)	56, 136, 243, 276, 327
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	5 cut(s)	185, 268, 284, 364, 392
CviKI_1	RGCY	5 cut(s)	185, 268, 284, 364, 392
CviQI	GTAC	2 cut(s)	134, 376
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
EaeI	YGGCCR	2 cut(s)	183, 390
Eam1104I	CTCTTC	3 cut(s)	146, 216, 228
EarI	CTCTTC	3 cut(s)	146, 216, 228
Eco32I	GATATC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	1 cut(s)	397
FaiI	YATR	8 cut(s)	9, 17, 30, 77, 122, 254, 311, 395
FatI	CATG	1 cut(s)	393
FokI	GGATG	2 cut(s)	155, 211
FspBI	CTAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	185, 392
HapII	CCGG	6 cut(s)	57, 137, 175, 244, 277, 328
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	3 cut(s)	101, 179, 341
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	6 cut(s)	57, 137, 175, 244, 277, 328
HphI	GGTGA	2 cut(s)	71, 250
Hpy166II	GTNNAC	2 cut(s)	228, 241
Hpy188I	TCNGA	2 cut(s)	97, 106
Hpy188III	TCNNGA	2 cut(s)	263, 439
Hpy8I	GTNNAC	2 cut(s)	228, 241
HpyCH4III	ACNGT	2 cut(s)	25, 380
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	70, 150, 188, 248, 257, 290, 341
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	214
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	6 cut(s)	80, 163, 168, 220, 233, 245
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	2 cut(s)	304, 421
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	121, 189, 229
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	3 cut(s)	227, 248, 445
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	6 cut(s)	57, 137, 175, 244, 277, 328
MspR9I	CCNGG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	179, 341
PinAI	ACCGGT	5 cut(s)	56, 136, 243, 276, 327
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	135, 377
RsaNI	GTAC	2 cut(s)	134, 376
SaqAI	TTAA	3 cut(s)	227, 248, 445
Sau3AI	GATC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	132, 217, 240, 270, 286
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	353, 437
SmoI	CTYRAG	2 cut(s)	353, 437
Sse9I	AATT	2 cut(s)	304, 421
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	25, 380
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	194, 438
TasI	AATT	2 cut(s)	304, 421
TfiI	GAWTC	2 cut(s)	179, 341
Tru1I	TTAA	3 cut(s)	227, 248, 445
Tru9I	TTAA	3 cut(s)	227, 248, 445
TspDTI	ATGAA	3 cut(s)	17, 78, 215
TspGWI	ACGGA	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.