Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Reverse (-)

2321807 .. 2322223

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCCCGGTCCAAGAGACCGGGCTCAAGGCTACGATAGAGGAGCTCATGTCCCTGCTGCAAGAAGGAAACTCAAACTCGAACTCGGGAGTCCAAACTCCGGTTCCGAGGGCTCGAACGGCCGGGGGGTCTACTCGCTGGATGAGAGAAAGAGGAGGCGCATGACGTCCAACCGGGAGTCGGCCAGGCGGTCCAGGTGGAGGAAGAAGAGGCATTTGGAGGACTTGACGGAGGAGGCGAACCGTTTGAAAATGGAGAACCGGGAGCTGAAGAACAGGTTGGGCTTGGTTGCTCAGAAGTGTTACGTAACATGGAGAGAAAATGAGAGGTTGGAATCCGAATCCCTAGCTCTGTGGGCTAGATTTTCTGATCTGAACCAGGTTTTAGTTGCCATGCAGACGATGCGGTCACAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

138

Amino Acids

16.19

Weight (kDa)

10.69

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	46 - 93	6.6e-08	Basic region leucine zipper
bZIP_1	PF00170	49 - 101	1.7e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AatII	GACGTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	187, 403
AcoI	YGGCCR	2 cut(s)	118, 180
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	98, 178, 198
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	182, 191, 375
AjuI	GAANNNNNNNTTGG	6 cut(s)	85, 117, 197, 229, 260, 292
AluBI	AGCT	3 cut(s)	44, 265, 347
AluI	AGCT	3 cut(s)	44, 265, 347
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	118, 180
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	8, 189
AsuC2I	CCSGG	5 cut(s)	6, 20, 122, 173, 260
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	8, 189
BanII	GRGCYC	3 cut(s)	25, 46, 113
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	3 cut(s)	184, 193, 377
BcnI	CCSGG	5 cut(s)	6, 20, 122, 173, 260
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	344, 357
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	8 cut(s)	6, 20, 122, 173, 184, 193, 260, 377
Bme18I	GGWCC	2 cut(s)	8, 189
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	8, 189
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	8 cut(s)	6, 20, 122, 173, 184, 193, 260, 377
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	5 cut(s)	6, 20, 122, 173, 260
BsaAI	YACGTR	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	105, 121
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 178, 198
BseBI	CCWGG	3 cut(s)	184, 193, 377
BseDI	CCNNGG	2 cut(s)	105, 121
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	98, 178, 198
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	3 cut(s)	54, 166, 245
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	120, 182
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	6 cut(s)	6, 19, 99, 121, 172, 259
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	98, 178, 198
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	120, 182
Bso31I	GGTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	25, 46, 113
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	187, 403
BspANI	GGCC	2 cut(s)	120, 182
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	105, 121
BssMI	GATC	1 cut(s)	367
BssNI	GRCGYC	1 cut(s)	164
Bst2UI	CCWGG	3 cut(s)	184, 193, 377
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	367
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 353, 400
BstNI	CCWGG	3 cut(s)	184, 193, 377
BstSCI	CCNGG	8 cut(s)	4, 18, 120, 171, 182, 191, 258, 375
BstSNI	TACGTA	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	120, 182
BtsCI	GGATG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	8, 189
CsiI	ACCWGGT	1 cut(s)	375
CviAII	CATG	4 cut(s)	47, 160, 309, 391
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	118, 180
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	118
Eco105I	TACGTA	1 cut(s)	304
Eco24I	GRGCYC	3 cut(s)	25, 46, 113
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	8, 189
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	44
EcoRII	CCWGG	3 cut(s)	182, 191, 375
EcoT38I	GRGCYC	3 cut(s)	25, 46, 113
FaeI	CATG	4 cut(s)	50, 163, 312, 394
FaiI	YATR	4 cut(s)	48, 161, 310, 392
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	4 cut(s)	46, 159, 308, 390
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	3 cut(s)	25, 46, 113
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	2 cut(s)	344, 357
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	120, 182
HapII	CCGG	6 cut(s)	6, 19, 99, 121, 172, 259
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	4 cut(s)	50, 163, 312, 394
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	88, 176, 332, 338
HpaII	CCGG	6 cut(s)	6, 19, 99, 121, 172, 259
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	106, 294, 337, 367, 372
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	164, 303
HpyCH4V	TGCA	2 cut(s)	59, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 353, 400
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	164, 303
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	4 cut(s)	50, 163, 312, 394
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	41, 262
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	390
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	2 cut(s)	344, 357
MaeII	ACGT	2 cut(s)	164, 303
MaeIII	GTNAC	3 cut(s)	299, 304, 405
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	214, 217, 280
MhlI	GDGCHC	3 cut(s)	25, 46, 113
MlyI	GAGTC	2 cut(s)	97, 185
MmeI	TCCRAC	2 cut(s)	192, 309
MseI	TTAA	1 cut(s)	415
MspI	CCGG	6 cut(s)	6, 19, 99, 121, 172, 259
MspR9I	CCNGG	8 cut(s)	6, 20, 122, 173, 184, 193, 260, 377
MvaI	CCWGG	3 cut(s)	184, 193, 377
MwoI	GCNNNNNNNGC	3 cut(s)	117, 353, 400
NciI	CCSGG	5 cut(s)	6, 20, 122, 173, 260
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	50, 163, 312, 394
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	332, 338
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	96, 184
PpsI	GAGTC	2 cut(s)	96, 184
Ppu21I	YACGTR	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	182, 191, 375
PspGI	CCWGG	3 cut(s)	182, 191, 375
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	8, 189
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	8, 189
SchI	GAGTC	2 cut(s)	97, 185
ScrFI	CCNGG	8 cut(s)	6, 20, 122, 173, 184, 193, 260, 377
SduI	GDGCHC	3 cut(s)	25, 46, 113
SetI	ASST	9 cut(s)	46, 167, 197, 267, 278, 306, 329, 349, 381
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	2 cut(s)	8, 189
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SnaBI	TACGTA	1 cut(s)	304
SsiI	CCGC	2 cut(s)	187, 403
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	2 cut(s)	344, 357
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	8 cut(s)	4, 18, 120, 171, 182, 191, 258, 375
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	2 cut(s)	167, 306
TaqI	TCGA	2 cut(s)	78, 113
TfiI	GAWTC	2 cut(s)	332, 338
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	8, 189
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	344, 357
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.