Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004749

Physical Location & Seq

Genomic Coordinates Reverse (-)

52283242 .. 52286621

Gene Structure 3380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0376200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGGGGCCGGGGAGTTCGATGTTGTATTCCTTCCTTCTGTTCACTGTGATTCTCTCACTTCAAGAGATGTATAGAGGGAAGTTAGCATCAACTGAGTTGTTTACGATTCTCGGGGGATTCATCAGTTCCCTCTTGTTCCTTGTGCTGCTCACTTTCATTGGCAATTATCAGGAAACATGTGGCGTAAGGACTGGCTGGGGTGCTGTTATTATAGCAGAAGCAGTTGCTCTTATTGCTGCTAGCACTGTCCATCGAGTTTGTATCACGACATGTTTCTTGTTCTCTGCCGGATTACTGTATGAGGTCAACAAGCTTTCAGGGATAATGCTTTCCAAAAGTGAATCTAAAACAAAAAGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

121

Amino Acids

13.14

Weight (kDa)

8.91

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Keratin_assoc	PF09775	5 - 118	2.8e-40	Keratinocyte-associated protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520
fragaria_vesca	FvH4_2g32730 FvH4_2g32730 FvH4_2g32730 FvH4_2g32730
malus_domestica	MD08G1078900.v1.1 MD15G1065900.v1.1
prunus_persica	Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1
pyrus_communis	pycom08g06530 pycom15g06230
rosa_chinensis	RchiOBHm_Chr6g0309951
rosa_laevigata	RLG00000010522
rosa_multiflora	Rmu_sc0000294.1_g000007 Rmu_sc0026843.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159010
rosa_rugosa	Rorug06G0376100 Rorug06G0376200 Rorug06G0376200
rosa_samantha	Rh6AG490000 Rh6BG499400 Rh6CG504300 Rh6DG490500
rosa_wichuraiana	Rw6G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AflIII	ACRYGT	2 cut(s)	179, 272
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	148, 239
AspS9I	GGNCC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	12
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	135, 226
BccI	CCATC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	149, 240
BlsI	GCNGC	2 cut(s)	150, 241
Bme1390I	CCNGG	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	135, 226
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	11, 291
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	9
BspOI	GCTAGC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	49, 250, 300
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	183, 276
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	135, 226
BsuRI	GGCC	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	45, 246, 361
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	2 cut(s)	180, 273
CviJI	RGCY	3 cut(s)	10, 198, 316
CviKI_1	RGCY	3 cut(s)	10, 198, 316
DdeI	CTNAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	113
FaeI	CATG	2 cut(s)	183, 276
FaiI	YATR	5 cut(s)	75, 181, 215, 274, 303
FatI	CATG	2 cut(s)	179, 272
Fnu4HI	GCNGC	2 cut(s)	149, 240
Fsp4HI	GCNGC	2 cut(s)	149, 240
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	149, 240
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	11, 291
Hin1II	CATG	2 cut(s)	183, 276
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	4 cut(s)	52, 109, 120, 344
HpaII	CCGG	2 cut(s)	11, 291
Hpy166II	GTNNAC	3 cut(s)	45, 105, 310
Hpy188III	TCNNGA	3 cut(s)	65, 173, 268
Hpy8I	GTNNAC	3 cut(s)	45, 105, 310
HpyAV	CCTTC	2 cut(s)	43, 47
HpyCH4III	ACNGT	3 cut(s)	49, 250, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	183, 276
LpnPI	CCDG	6 cut(s)	24, 158, 180, 184, 304, 306
Lsp1109I	GCAGC	2 cut(s)	135, 226
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	243
MluCI	AATT	1 cut(s)	166
MnlI	CCTC	3 cut(s)	71, 143, 298
MspI	CCGG	2 cut(s)	11, 291
MspR9I	CCNGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	12
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	183, 276
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	2 cut(s)	183, 276
PciI	ACATGT	2 cut(s)	179, 272
PfeI	GAWTC	4 cut(s)	52, 109, 120, 344
PkrI	GCNGC	2 cut(s)	150, 241
PscI	ACATGT	2 cut(s)	179, 272
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	149, 240
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	2 cut(s)	309, 318
SfaNI	GCATC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	49, 250, 300
TaqI	TCGA	2 cut(s)	20, 256
TasI	AATT	1 cut(s)	166
TfiI	GAWTC	4 cut(s)	52, 109, 120, 344
TscAI	CASTG	2 cut(s)	52, 253
TseI	GCWGC	2 cut(s)	148, 239
TspDTI	ATGAA	2 cut(s)	112, 148
TspRI	CASTG	2 cut(s)	52, 253
XceI	RCATGY	2 cut(s)	183, 276
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.