RchiOBHm_Chr6g0309951

protein KIAA0930 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004749
Physical Location & Seq
Forward (+)
67389569 .. 67394133
4565 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27872

Sequence Viewer

Length: 1173 bp
ATGCTCCGAGATGGTGAAGAAACCCCCTCCAGATACGAGCTGCTCAGCATGGTGAAGAAGCACTCGAGCTTGTTGGGGAAGACAGTCGTCGTCGACGCCGACGACGCCTCCGATGTCGAAATGGACCCCCGCTTCTGGCACGACGTCCTGGATTTGTACTTCGTTCGCGGCAAAGACTCCCGCGGTCGCCAGGACGATGATCTCGTCTTCTTCGTCAGAAAATTGAGCTCGCAGGGCTTCAACGACGACGTTCCTCCTTACTTTGTACGCAGGTGGGCACCTAAGTTGGATAACTTGATAGGTGAAAAATCGGTAGAGGTGGATTGGAGGCGCTCCTTTCACTTGAATTTGATTGCTCACACTACATTTACTGTAACAGTGGCTATTTGCAGTCATCAGGACCTTCGGAATCATCAAGCTGATCAAGATAAACCATTATCTCCAATATACAAGGTAGTAAAGACTGTTTATGCATCTCCCAGCCGTGTCAACTTTCATTTGGACTCGCAAAAGGAAGTGGAGACGACGCCTGCTTATCCAGATATTTGTTTTGCTGTTGATGACTTTGACTCCACTTTTGATGCTGTGGTATTGACTGATTCAGACCATTGCTATTGTGTAATACTCAATGCACATGATGGGGCAGCATTTCCTAAGGCAAAGGATCCTGATGATTGCAGTTCTAGTGATAGTTCCTCTTTGAAGGTTGACACTAGTTCTGCAAAGGCAAAAAGTTCCAAGCTGACTCTTTTTTCGGGATTTGTCAGCTATCAAATGGTACGAGATGCATACGATGCCGGCAAGTCTCGTTTTGGGAACCTTTTATCACTTGCTCATTCCCCTGGCAAACAAGACAAACTGTACATGAAAGGTCCTGGAGGCCGCGGGGAAGTTGAAGTGGCTGTTTCTGGTGTTGTAGATCAGAGCCAGCAAGATACAGGTCCTTTTTCACCTGTTACATCCAACAGAGGATTCGGAATTGGCTTTATGGTTCGTAAAGCAGCTTCCGTTGCATCTGTGGCGGCAAAGAATGCCTATGCGGCTGCTGCTTCTAGCCATAGTTTTGACGAGGAGATGATCCCTCTCAAATGTTGCTTGATGTCCATTTCATTACCGTGGGAACACATAGCATATGATCTTCTTTTTAAGGGCACTCCTCCTGTGAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2045

Protein Analysis

390

Amino Acids

43.09

Weight (kDa)

5.64

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2045 PF09741 44 - 305 2.3e-77 Uncharacterized conserved protein (DUF2045)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
AatII GACGTC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 93
AccII CGCG 3 cut(s) 168, 183, 885
AciI CCGC 8 cut(s) 130, 168, 181, 183, 883, 885, 1022, 1040
AclWI GGATC 3 cut(s) 659, 672, 1072
AcsI RAATTY 1 cut(s) 346
AcyI GRCGYC 4 cut(s) 96, 105, 144, 527
AfaI GTAC 4 cut(s) 158, 267, 780, 863
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 4 cut(s) 241, 346, 703, 896
AhlI ACTAGT 1 cut(s) 713
AjnI CCWGG 4 cut(s) 147, 189, 841, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AluBI AGCT 7 cut(s) 40, 69, 228, 419, 742, 768, 1004
AluI AGCT 7 cut(s) 40, 69, 228, 419, 742, 768, 1004
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 515, 810
AlwI GGATC 3 cut(s) 659, 672, 1072
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 880
ApeKI GCWGC 5 cut(s) 40, 644, 1001, 1043, 1046
ApoI RAATTY 1 cut(s) 346
ArsI GACNNNNNNTTYG 4 cut(s) 560, 592, 736, 768
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 4 cut(s) 124, 400, 872, 941
AsuHPI GGTGA 4 cut(s) 26, 64, 314, 942
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 4 cut(s) 124, 400, 872, 941
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 2 cut(s) 280, 1154
BamHI GGATCC 1 cut(s) 664
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 988, 1020
BbsI GAAGAC 2 cut(s) 86, 199
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 5 cut(s) 27, 656, 1013, 1030, 1033
BccI CCATC 2 cut(s) 5, 632
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 4 cut(s) 149, 191, 843, 876
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 515, 810
BcuI ACTAGT 1 cut(s) 713
BfaI CTAG 3 cut(s) 684, 714, 1053
BfoI RGCGCY 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 1040
BisI GCNGC 9 cut(s) 41, 169, 645, 883, 1002, 1023, 1041, 1044, 1047
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 9 cut(s) 42, 170, 646, 884, 1003, 1024, 1042, 1045, 1048
Bme1390I CCNGG 4 cut(s) 149, 191, 843, 876
Bme18I GGWCC 4 cut(s) 124, 400, 872, 941
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 124, 400, 872, 941
BmiI GGNNCC 4 cut(s) 126, 279, 666, 818
BmrFI CCNGG 4 cut(s) 149, 191, 843, 876
BmsI GCATC 5 cut(s) 482, 571, 775, 784, 1022
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 86, 199
BpmI CTGGAG 2 cut(s) 13, 897
Bpu1102I GCTNAGC 1 cut(s) 44
BsaHI GRCGYC 4 cut(s) 96, 105, 144, 527
BsaJI CCNNGG 4 cut(s) 181, 841, 883, 1115
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 554, 584
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 797
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 607
BseBI CCWGG 4 cut(s) 149, 191, 843, 876
BseDI CCNNGG 4 cut(s) 181, 841, 883, 1115
BseGI GGATG 1 cut(s) 959
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 1085, 1146
BseSI GKGCMC 2 cut(s) 280, 1154
BseXI GCAGC 5 cut(s) 27, 656, 1013, 1030, 1033
BseYI CCCAGC 1 cut(s) 479
Bsh1236I CGCG 3 cut(s) 168, 183, 885
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 882
BshNI GGYRCC 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 2 cut(s) 515, 810
BsmBI CGTCTC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 1 cut(s) 882
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 230, 280, 1154
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 8 cut(s) 130, 168, 181, 183, 883, 885, 1022, 1040
BspANI GGCC 1 cut(s) 882
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 3 cut(s) 168, 183, 885
BspLI GGNNCC 4 cut(s) 126, 279, 666, 818
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 3 cut(s) 659, 672, 1072
BspT107I GGYRCC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 797
BsrGI TGTACA 1 cut(s) 861
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 4 cut(s) 181, 841, 883, 1115
BssMI GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
BssNI GRCGYC 4 cut(s) 96, 105, 144, 527
Bst2UI CCWGG 4 cut(s) 149, 191, 843, 876
Bst4CI ACNGT 6 cut(s) 85, 373, 379, 466, 861, 1116
BstACI GRCGYC 4 cut(s) 96, 105, 144, 527
BstAPI GCANNNNNTGC 2 cut(s) 794, 1031
BstAUI TGTACA 1 cut(s) 861
BstC8I GCNNGC 4 cut(s) 230, 531, 799, 929
BstDEI CTNAG 3 cut(s) 44, 282, 654
BstDSI CCRYGG 3 cut(s) 181, 883, 1115
BstF5I GGATG 1 cut(s) 959
BstFNI CGCG 3 cut(s) 168, 183, 885
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 6 cut(s) 202, 424, 667, 922, 1080, 1138
BstMAI GTCTC 2 cut(s) 515, 810
BstMBI GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 8 cut(s) 104, 234, 794, 1010, 1019, 1031, 1040, 1046
BstNI CCWGG 4 cut(s) 149, 191, 843, 876
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 4 cut(s) 147, 189, 841, 874
BstSLI GKGCMC 2 cut(s) 280, 1154
BstUI CGCG 3 cut(s) 168, 183, 885
BstV1I GCAGC 5 cut(s) 27, 656, 1013, 1030, 1033
BstV2I GAAGAC 2 cut(s) 86, 199
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 1 cut(s) 882
BtgI CCRYGG 3 cut(s) 181, 883, 1115
BtsCI GGATG 1 cut(s) 959
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 4 cut(s) 230, 531, 799, 929
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 4 cut(s) 124, 400, 872, 941
Cfr42I CCGCGG 2 cut(s) 184, 886
CseI GACGC 3 cut(s) 104, 113, 535
Csp6I GTAC 4 cut(s) 157, 266, 779, 862
CviAII CATG 3 cut(s) 49, 635, 865
CviQI GTAC 4 cut(s) 157, 266, 779, 862
DdeI CTNAG 3 cut(s) 44, 282, 654
DpnI GATC 6 cut(s) 201, 423, 666, 921, 1079, 1137
DpnII GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
Ecl136II GAGCTC 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 230
Eco47I GGWCC 4 cut(s) 124, 400, 872, 941
Eco53kI GAGCTC 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 228
EcoO109I RGGNCCY 3 cut(s) 400, 872, 941
EcoRII CCWGG 4 cut(s) 147, 189, 841, 874
EcoT22I ATGCAT 2 cut(s) 475, 790
EcoT38I GRGCYC 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 3 cut(s) 52, 638, 868
FatI CATG 3 cut(s) 48, 634, 864
FauI CCCGC 3 cut(s) 137, 188, 878
FauNDI CATATG 1 cut(s) 1132
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 9 cut(s) 41, 169, 645, 883, 1002, 1023, 1041, 1044, 1047
FokI GGATG 1 cut(s) 946
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 9 cut(s) 41, 169, 645, 883, 1002, 1023, 1041, 1044, 1047
FspBI CTAG 3 cut(s) 684, 714, 1053
GlaI GCGC 1 cut(s) 332
GluI GCNGC 9 cut(s) 41, 169, 645, 883, 1002, 1023, 1041, 1044, 1047
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 2 cut(s) 13, 897
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 1 cut(s) 882
HapII CCGG 1 cut(s) 798
HgaI GACGC 3 cut(s) 104, 113, 535
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 4 cut(s) 96, 105, 144, 527
Hin1II CATG 3 cut(s) 52, 638, 868
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 3 cut(s) 94, 490, 709
HindII GTYRAC 3 cut(s) 94, 490, 709
HinfI GANTC 7 cut(s) 176, 409, 503, 569, 599, 745, 972
HpaII CCGG 1 cut(s) 798
HphI GGTGA 4 cut(s) 26, 64, 314, 942
Hpy166II GTNNAC 4 cut(s) 94, 490, 709, 1165
Hpy188I TCNGA 7 cut(s) 8, 112, 218, 408, 604, 924, 977
Hpy188III TCNNGA 6 cut(s) 30, 398, 425, 539, 668, 756
Hpy8I GTNNAC 4 cut(s) 94, 490, 709, 1165
Hpy99I CGWCG 9 cut(s) 92, 95, 98, 104, 107, 146, 248, 251, 529
HpyAV CCTTC 2 cut(s) 413, 697
HpyCH4III ACNGT 6 cut(s) 85, 373, 379, 466, 861, 1116
HpyCH4IV ACGT 2 cut(s) 144, 249
HpyCH4V TGCA 7 cut(s) 390, 473, 632, 678, 722, 788, 1013
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 234, 794, 1010, 1019, 1031, 1040, 1046
HpyF3I CTNAG 3 cut(s) 44, 282, 654
HpySE526I ACGT 2 cut(s) 144, 249
Hsp92I GRCGYC 4 cut(s) 96, 105, 144, 527
Hsp92II CATG 3 cut(s) 52, 638, 868
HspAI GCGC 1 cut(s) 331
KroI GCCGGC 1 cut(s) 797
KroNI GCCGGC 1 cut(s) 799
Ksp22I TGATCA 1 cut(s) 421
KspI CCGCGG 2 cut(s) 184, 886
Kzo9I GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
LmnI GCTCC 2 cut(s) 9, 338
Lsp1109I GCAGC 5 cut(s) 27, 656, 1013, 1030, 1033
LweI GCATC 5 cut(s) 482, 571, 775, 784, 1022
MaeI CTAG 3 cut(s) 684, 714, 1053
MaeII ACGT 2 cut(s) 144, 249
MaeIII GTNAC 2 cut(s) 373, 955
MalI GATC 6 cut(s) 201, 423, 666, 921, 1079, 1137
MboI GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
MboII GAAGA 6 cut(s) 29, 67, 91, 199, 202, 1130
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 3 cut(s) 230, 280, 1154
MluCI AATT 3 cut(s) 221, 346, 978
MlyI GAGTC 4 cut(s) 170, 497, 563, 739
MmeI TCCRAC 2 cut(s) 267, 987
Mph1103I ATGCAT 2 cut(s) 475, 790
MroNI GCCGGC 1 cut(s) 797
MseI TTAA 1 cut(s) 1146
MslI CAYNNNNRTG 1 cut(s) 1114
MspA1I CMGCKG 2 cut(s) 183, 885
MspI CCGG 1 cut(s) 798
MspR9I CCNGG 4 cut(s) 149, 191, 843, 876
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 4 cut(s) 149, 191, 843, 876
MvnI CGCG 3 cut(s) 168, 183, 885
MwoI GCNNNNNNNGC 8 cut(s) 104, 234, 794, 1010, 1019, 1031, 1040, 1046
NaeI GCCGGC 1 cut(s) 799
NdeI CATATG 1 cut(s) 1132
NdeII GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
NgoMIV GCCGGC 1 cut(s) 797
NlaIII CATG 3 cut(s) 52, 638, 868
NlaIV GGNNCC 4 cut(s) 126, 279, 666, 818
NsiI ATGCAT 2 cut(s) 475, 790
PaeR7I CTCGAG 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 5 cut(s) 96, 99, 108, 201, 210
PctI GAATGC 1 cut(s) 1036
PdiI GCCGGC 1 cut(s) 799
PfeI GAWTC 3 cut(s) 409, 599, 972
PfoI TCCNGGA 2 cut(s) 147, 874
PkrI GCNGC 9 cut(s) 42, 170, 646, 884, 1003, 1024, 1042, 1045, 1048
PleI GAGTC 4 cut(s) 170, 497, 563, 739
PpsI GAGTC 4 cut(s) 170, 497, 563, 739
PpuMI RGGWCCY 3 cut(s) 400, 872, 941
PshAI GACNNNNGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 230
Psp5II RGGWCCY 3 cut(s) 400, 872, 941
Psp6I CCWGG 4 cut(s) 147, 189, 841, 874
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 4 cut(s) 147, 189, 841, 874
PspN4I GGNNCC 4 cut(s) 126, 279, 666, 818
PspPI GGNCC 4 cut(s) 124, 400, 872, 941
PspPPI RGGWCCY 3 cut(s) 400, 872, 941
PspXI VCTCGAGB 1 cut(s) 64
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 4 cut(s) 158, 267, 780, 863
RsaNI GTAC 4 cut(s) 157, 266, 779, 862
RseI CAYNNNNRTG 1 cut(s) 1114
SacI GAGCTC 1 cut(s) 230
SacII CCGCGG 2 cut(s) 184, 886
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 1146
SatI GCNGC 9 cut(s) 41, 169, 645, 883, 1002, 1023, 1041, 1044, 1047
Sau3AI GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
Sau96I GGNCC 4 cut(s) 124, 400, 872, 941
SchI GAGTC 4 cut(s) 170, 497, 563, 739
ScrFI CCNGG 4 cut(s) 149, 191, 843, 876
SduI GDGCHC 3 cut(s) 230, 280, 1154
SfaNI GCATC 5 cut(s) 482, 571, 775, 784, 1022
Sfr274I CTCGAG 1 cut(s) 64
Sfr303I CCGCGG 2 cut(s) 184, 886
SgrBI CCGCGG 2 cut(s) 184, 886
SgrDI CGTCGACG 1 cut(s) 92
SinI GGWCC 4 cut(s) 124, 400, 872, 941
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 1114
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 713
Sse9I AATT 3 cut(s) 221, 346, 978
SsiI CCGC 8 cut(s) 130, 168, 181, 183, 883, 885, 1022, 1040
SspMI CTAG 3 cut(s) 684, 714, 1053
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 4 cut(s) 147, 189, 841, 874
TaaI ACNGT 6 cut(s) 85, 373, 379, 466, 861, 1116
TaiI ACGT 2 cut(s) 147, 252
TaqI TCGA 3 cut(s) 65, 93, 117
TasI AATT 3 cut(s) 221, 346, 978
TatI WGTACW 2 cut(s) 156, 861
TauI GCSGC 4 cut(s) 171, 885, 1025, 1043
TfiI GAWTC 3 cut(s) 409, 599, 972
Tru1I TTAA 1 cut(s) 1146
Tru9I TTAA 1 cut(s) 1146
TscAI CASTG 1 cut(s) 384
TseI GCWGC 5 cut(s) 40, 644, 1001, 1043, 1046
TspDTI ATGAA 3 cut(s) 485, 881, 1098
TspGWI ACGGA 1 cut(s) 997
TspRI CASTG 1 cut(s) 384
VpaK11BI GGWCC 4 cut(s) 124, 400, 872, 941
XapI RAATTY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 3 cut(s) 684, 714, 1053
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 2 cut(s) 475, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.