Rmu_sc0026843.1_g000001

protein KIAA0930 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026843.1
OG0004749
Physical Location & Seq
Reverse (-)
1 .. 1054
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026843.1_g000001.1.cds

Sequence Viewer

Length: 389 bp
atgctccgagatggtgaagaaaccccctccagatacgagctgctcagcatggtgaagaagcactcgagcttgttggggaagacagtcgtccacgacgacgacgcctccgatgtcgaaatggacccccgcttctggcacgacgtcctggatttgtacttcgttcgcggcaaagactcccgcggtcgccaggacgatgatctcgtcttcttcgtcagaaaattgagctcgcagggcttcaacgacgacgttcctccttactttgtacgcaggtgggcacctaagttggataacttgataggtgaaaaatcggtagaggtggattggaggcgctcctttcacttgaatttgattgctcacactacatttactgtaacagtggctatttgcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2045

Protein Analysis

129

Amino Acids

15.04

Weight (kDa)

5.68

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 258
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 274
AccII CGCG 2 cut(s) 165, 180
AciI CCGC 4 cut(s) 127, 165, 178, 180
AcsI RAATTY 1 cut(s) 343
AcyI GRCGYC 2 cut(s) 102, 141
AfaI GTAC 2 cut(s) 155, 264
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 2 cut(s) 238, 343
AjnI CCWGG 2 cut(s) 144, 186
AluBI AGCT 3 cut(s) 40, 69, 225
AluI AGCT 3 cut(s) 40, 69, 225
Alw21I GWGCWC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 26, 64, 311
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 2 cut(s) 86, 196
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 146, 188
BfoI RGCGCY 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 2 cut(s) 41, 166
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 2 cut(s) 42, 167
Bme1390I CCNGG 2 cut(s) 146, 188
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 123, 276
BmrFI CCNGG 2 cut(s) 146, 188
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 86, 196
BpmI CTGGAG 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 44
BsaHI GRCGYC 2 cut(s) 102, 141
BsaJI CCNNGG 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 146, 188
BseDI CCNNGG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 2 cut(s) 165, 180
Bsh1285I CGRYCG 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 227, 277
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 4 cut(s) 127, 165, 178, 180
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 165, 180
BspLI GGNNCC 2 cut(s) 123, 276
BspMI ACCTGC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 2 cut(s) 102, 141
Bst2UI CCWGG 2 cut(s) 146, 188
Bst4CI ACNGT 3 cut(s) 85, 370, 376
BstACI GRCGYC 2 cut(s) 102, 141
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 44, 279
BstDSI CCRYGG 1 cut(s) 178
BstFNI CGCG 2 cut(s) 165, 180
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 2 cut(s) 146, 188
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 144, 186
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 2 cut(s) 165, 180
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 2 cut(s) 86, 196
BtgI CCRYGG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 121
Cfr42I CCGCGG 1 cut(s) 181
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 154, 263
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 40, 69, 225, 234, 380
CviKI_1 RGCY 5 cut(s) 40, 69, 225, 234, 380
CviQI GTAC 2 cut(s) 154, 263
DdeI CTNAG 2 cut(s) 44, 279
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 144, 186
EcoT38I GRGCYC 1 cut(s) 227
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FatI CATG 1 cut(s) 48
FauI CCCGC 2 cut(s) 134, 185
Fnu4HI GCNGC 2 cut(s) 41, 166
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 41, 166
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 41, 166
GsuI CTGGAG 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 331
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 2 cut(s) 102, 141
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 1 cut(s) 173
HphI GGTGA 3 cut(s) 26, 64, 311
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 8, 109, 215
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 6 cut(s) 98, 101, 104, 143, 245, 248
HpyCH4III ACNGT 3 cut(s) 85, 370, 376
HpyCH4IV ACGT 2 cut(s) 141, 246
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 2 cut(s) 44, 279
HpySE526I ACGT 2 cut(s) 141, 246
Hsp92I GRCGYC 2 cut(s) 102, 141
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 328
KspI CCGCGG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 2 cut(s) 9, 335
LpnPI CCDG 8 cut(s) 43, 118, 131, 158, 173, 200, 215, 253
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 2 cut(s) 141, 246
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 5 cut(s) 29, 67, 91, 196, 199
MhlI GDGCHC 2 cut(s) 227, 277
MluCI AATT 2 cut(s) 218, 343
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 5 cut(s) 37, 115, 261, 307, 318
MspA1I CMGCKG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 146, 188
MvaI CCWGG 2 cut(s) 146, 188
MvnI CGCG 2 cut(s) 165, 180
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 123, 276
PaeR7I CTCGAG 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 4 cut(s) 93, 105, 198, 207
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 2 cut(s) 42, 167
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PshAI GACNNNNGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 144, 186
PspGI CCWGG 2 cut(s) 144, 186
PspN4I GGNNCC 2 cut(s) 123, 276
PspPI GGNCC 1 cut(s) 121
PspXI VCTCGAGB 1 cut(s) 64
RsaI GTAC 2 cut(s) 155, 264
RsaNI GTAC 2 cut(s) 154, 263
SacI GAGCTC 1 cut(s) 227
SacII CCGCGG 1 cut(s) 181
SatI GCNGC 2 cut(s) 41, 166
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 146, 188
SduI GDGCHC 2 cut(s) 227, 277
SetI ASST 9 cut(s) 42, 71, 144, 227, 249, 272, 280, 301, 318
Sfr274I CTCGAG 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 181
SinI GGWCC 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 2 cut(s) 218, 343
SsiI CCGC 4 cut(s) 127, 165, 178, 180
SstI GAGCTC 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 144, 186
TaaI ACNGT 3 cut(s) 85, 370, 376
TaiI ACGT 2 cut(s) 144, 249
TaqI TCGA 2 cut(s) 65, 114
TasI AATT 2 cut(s) 218, 343
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 168
TscAI CASTG 1 cut(s) 381
TseI GCWGC 1 cut(s) 40
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 64
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.