AT1G59520

protein KIAA0930 homolog isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004749
Physical Location & Seq
Forward (+)
21861282 .. 21866210
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59520.5

Sequence Viewer

Length: 1167 bp
ATGCTCAACGATGGCGAAGTAACTCCTTCTAGACATGAGATTCTGAGTATGGTGAAGAAGCACTCAAAGTCATTAGGAAAGACGTCTCTTGATGAGCAAGATGCGTCTGATGTAGAAATGGACTCTAATTTCTGGCATGGTGTGTTTGATGTGTACTTTGTTCGTTGCATGGAGTCGAGGAGGCGACAAGACGATGATCTTCTGTTTTTTGTCAGGAAATTGAGCTGTAAGTCATATGGTTTGACTGAAAATGAGGATGCACCAGCTCCTTACTTTGTACGCAGGTGGGCACCTAAGTTAGATGAGCTGCTTGGTGAAAGTCTGGCTGAAGTTGATTGGAGGAAATCATTTTATTTGAACATGATTGCCCACACATCGTTCACTGTTACTGTTGCGATTTGCAGTAATGAGGCCCTTAAGACGTACCAAGGAAGTAAAGACACAAAACTATCTCCTATATACAAGGTTGTAAAAACTGTATATGCATCACCTAGTCGTGTTAATTTTCATCTGGACTCAAAGAAGGAAGTGGAAACAACACCTGCCTACCCAGAAATTTGTTTTGCCGTAGATGATTTTGACTCAACCTTTGATGCTGTGGTTCTGACAGATAAAGATCATTGCTATTGCGTACTACTTAATTCTCACGATGGGGCAGCCTTTCCAAGTGCAACTGTTAAAGATTCGAGTGATTCTAATACGAATGCTGACCCTAGAACTGTGAAAGATCCTAAGGTTACTCTGTTTTCTGGGTTTGTCAGCTATCAGATGGTTCGAGAAGCCTATGAAGGGGGGAGGAATCGGTTTGGAAGTCTCCTATCTCTCGGTCATATTACAGGAAAAGCAGACAGACTTTATATGAGAGGCCCAGGAGGACGTGGAGAAGTTGAAGTAGCTGTTTCTGGCGTTGTAGATCAGAGCCAAGTAGTTTTAGGGCCTGTTTCACCTATGTCTTCAAAGAAGAGCATCGATCTCGGATCCATTTTCCGTAAAGCAGCCTCTGTTGCATCTGTCGCAGCTAAACATGCAATAGCAGCTGCTACTGCCTCTTATGATGAAGACGAGATGTTCCCTCTTAAATGCTGCTTAATGTCCATTTCATTACCATGGGACACTATTGCTCATGATCTTTTATTCAAGGCAACTCCACCAGTCAACATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2045

Protein Analysis

388

Amino Acids

42.99

Weight (kDa)

5.64

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2045 PF09741 42 - 303 6.6e-79 Uncharacterized conserved protein (DUF2045)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 273, 550
AatII GACGTC 1 cut(s) 86
Acc36I ACCTGC 2 cut(s) 273, 550
AccB1I GGYRCC 1 cut(s) 289
AclWI GGATC 3 cut(s) 722, 972, 985
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 4 cut(s) 155, 279, 425, 633
AfiI CCNNNNNNNGG 1 cut(s) 789
AflII CTTAAG 1 cut(s) 416
AgsI TTSAA 4 cut(s) 358, 890, 957, 1138
AjiI CACGTC 1 cut(s) 878
AjnI CCWGG 1 cut(s) 868
AluBI AGCT 7 cut(s) 225, 266, 307, 762, 896, 1019, 1037
AluI AGCT 7 cut(s) 225, 266, 307, 762, 896, 1019, 1037
Alw26I GTCTC 2 cut(s) 90, 818
AlwI GGATC 3 cut(s) 722, 972, 985
AlwNI CAGNNNCTG 1 cut(s) 1001
AoxI GGCC 3 cut(s) 411, 865, 935
ApeKI GCWGC 7 cut(s) 307, 656, 995, 1016, 1034, 1037, 1083
ApoI RAATTY 1 cut(s) 555
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AspS9I GGNCC 3 cut(s) 412, 866, 935
AsuHPI GGTGA 4 cut(s) 64, 326, 480, 936
AxyI CCTNAGG 1 cut(s) 732
BaeGI GKGCMC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 289
BbsI GAAGAC 2 cut(s) 945, 1065
BbvI GCAGC 7 cut(s) 294, 668, 1007, 1024, 1028, 1046, 1070
BccI CCATC 3 cut(s) 5, 644, 763
BceAI ACGGC 1 cut(s) 551
BcgI CGANNNNNNTGC 2 cut(s) 955, 989
BciT130I CCWGG 1 cut(s) 870
BcoDI GTCTC 2 cut(s) 90, 818
BfaI CTAG 3 cut(s) 30, 492, 714
BfrI CTTAAG 1 cut(s) 416
BfuAI ACCTGC 2 cut(s) 273, 550
BisI GCNGC 7 cut(s) 308, 657, 996, 1017, 1035, 1038, 1084
BlsI GCNGC 7 cut(s) 309, 658, 997, 1018, 1036, 1039, 1085
Bme1390I CCNGG 1 cut(s) 870
BmgBI CACGTC 1 cut(s) 878
BmgT120I GGNCC 3 cut(s) 412, 866, 935
BmiI GGNNCC 2 cut(s) 291, 979
BmrFI CCNGG 1 cut(s) 870
BmsI GCATC 6 cut(s) 91, 247, 494, 583, 975, 1016
BpiI GAAGAC 2 cut(s) 945, 1065
Bsa29I ATCGAT 1 cut(s) 969
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 427, 868, 1106
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse1I ACTGG 1 cut(s) 1151
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 619
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 870
BseCI ATCGAT 1 cut(s) 969
BseDI CCNNGG 3 cut(s) 427, 868, 1106
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 1151
BseRI GAGGAG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 7 cut(s) 294, 668, 1007, 1024, 1028, 1046, 1070
BshFI GGCC 3 cut(s) 413, 867, 937
BshNI GGYRCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 969
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 2 cut(s) 90, 818
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 1124
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 3 cut(s) 413, 867, 937
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
Bsp19I CCATGG 1 cut(s) 1106
BspANI GGCC 3 cut(s) 413, 867, 937
BspCNI CTCAG 1 cut(s) 36
BspDI ATCGAT 1 cut(s) 969
BspHI TCATGA 1 cut(s) 1123
BspLI GGNNCC 2 cut(s) 291, 979
BspMI ACCTGC 2 cut(s) 273, 550
BspPI GGATC 3 cut(s) 722, 972, 985
BspQI GCTCTTC 1 cut(s) 956
BspT107I GGYRCC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 1 cut(s) 1151
BssECI CCNNGG 3 cut(s) 427, 868, 1106
BssMI GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 427, 1106
Bst2UI CCWGG 1 cut(s) 870
Bst4CI ACNGT 5 cut(s) 385, 391, 478, 676, 721
Bst6I CTCTTC 1 cut(s) 956
BstACI GRCGYC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 44, 294, 732
BstDSI CCRYGG 1 cut(s) 1106
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 7 cut(s) 199, 619, 730, 916, 973, 980, 1129
BstMAI GTCTC 2 cut(s) 90, 818
BstMBI GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 1004, 1013, 1025, 1034, 1043
BstNI CCWGG 1 cut(s) 870
BstNSI RCATGY 1 cut(s) 1028
BstSCI CCNGG 1 cut(s) 868
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 7 cut(s) 294, 668, 1007, 1024, 1028, 1046, 1070
BstV2I GAAGAC 2 cut(s) 945, 1065
BstX2I RGATCY 2 cut(s) 727, 977
BstYI RGATCY 2 cut(s) 727, 977
Bsu15I ATCGAT 1 cut(s) 969
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 3 cut(s) 413, 867, 937
BsuTUI ATCGAT 1 cut(s) 969
BtgI CCRYGG 1 cut(s) 1106
BtrI CACGTC 1 cut(s) 878
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 2 cut(s) 273, 550
CaiI CAGNNNCTG 1 cut(s) 1001
CciI TCATGA 1 cut(s) 1123
Cfr13I GGNCC 3 cut(s) 412, 866, 935
ClaI ATCGAT 1 cut(s) 969
CseI GACGC 1 cut(s) 93
Csp6I GTAC 4 cut(s) 154, 278, 424, 632
CviAII CATG 8 cut(s) 35, 137, 169, 361, 1025, 1107, 1124, 1159
CviQI GTAC 4 cut(s) 154, 278, 424, 632
DdeI CTNAG 3 cut(s) 44, 294, 732
DpnI GATC 7 cut(s) 198, 618, 729, 915, 972, 979, 1128
DpnII GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
Eam1104I CTCTTC 1 cut(s) 956
EarI CTCTTC 1 cut(s) 956
Eco130I CCWWGG 2 cut(s) 427, 1106
Eco57I CTGAAG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 732
EcoO109I RGGNCCY 2 cut(s) 412, 935
EcoRII CCWGG 1 cut(s) 868
EcoT14I CCWWGG 2 cut(s) 427, 1106
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 427, 1106
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 8 cut(s) 38, 140, 172, 364, 1028, 1110, 1127, 1162
FaqI GGGAC 1 cut(s) 1124
FatI CATG 8 cut(s) 34, 136, 168, 360, 1024, 1106, 1123, 1158
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 7 cut(s) 308, 657, 996, 1017, 1035, 1038, 1084
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 7 cut(s) 308, 657, 996, 1017, 1035, 1038, 1084
FspBI CTAG 3 cut(s) 30, 492, 714
GluI GCNGC 7 cut(s) 308, 657, 996, 1017, 1035, 1038, 1084
HaeIII GGCC 3 cut(s) 413, 867, 937
HgaI GACGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 8 cut(s) 38, 140, 172, 364, 1028, 1110, 1127, 1162
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HinfI GANTC 8 cut(s) 40, 122, 173, 515, 581, 683, 692, 799
HphI GGTGA 4 cut(s) 64, 326, 480, 936
Hpy166II GTNNAC 3 cut(s) 154, 381, 1156
Hpy188I TCNGA 6 cut(s) 45, 109, 606, 768, 918, 977
Hpy188III TCNNGA 7 cut(s) 30, 89, 214, 512, 647, 776, 1124
Hpy8I GTNNAC 3 cut(s) 154, 381, 1156
HpyAV CCTTC 3 cut(s) 36, 517, 782
HpyCH4III ACNGT 5 cut(s) 385, 391, 478, 676, 721
HpyCH4IV ACGT 3 cut(s) 83, 422, 877
HpyCH4V TGCA 7 cut(s) 168, 260, 402, 485, 671, 1007, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 1004, 1013, 1025, 1034, 1043
HpyF3I CTNAG 3 cut(s) 44, 294, 732
HpySE526I ACGT 3 cut(s) 83, 422, 877
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 8 cut(s) 38, 140, 172, 364, 1028, 1110, 1127, 1162
Kzo9I GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
LguI GCTCTTC 1 cut(s) 956
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 7 cut(s) 294, 668, 1007, 1024, 1028, 1046, 1070
LweI GCATC 6 cut(s) 91, 247, 494, 583, 975, 1016
MaeI CTAG 3 cut(s) 30, 492, 714
MaeII ACGT 3 cut(s) 83, 422, 877
MaeIII GTNAC 3 cut(s) 19, 385, 736
MalI GATC 7 cut(s) 198, 618, 729, 915, 972, 979, 1128
MboI GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
MboII GAAGA 5 cut(s) 67, 191, 945, 973, 1070
MflI RGATCY 2 cut(s) 727, 977
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 5 cut(s) 127, 218, 502, 555, 640
MlyI GAGTC 4 cut(s) 116, 182, 509, 575
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 6 cut(s) 417, 501, 639, 678, 1077, 1088
MslI CAYNNNNRTG 1 cut(s) 1105
MspA1I CMGCKG 1 cut(s) 1037
MspCI CTTAAG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 870
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 870
MwoI GCNNNNNNNGC 5 cut(s) 1004, 1013, 1025, 1034, 1043
NcoI CCATGG 1 cut(s) 1106
NdeI CATATG 1 cut(s) 235
NdeII GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
NlaIII CATG 8 cut(s) 38, 140, 172, 364, 1028, 1110, 1127, 1162
NlaIV GGNNCC 2 cut(s) 291, 979
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 1028
PagI TCATGA 1 cut(s) 1123
PaqCI CACCTGC 2 cut(s) 273, 550
PciSI GCTCTTC 1 cut(s) 956
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 4 cut(s) 40, 683, 692, 799
PkrI GCNGC 7 cut(s) 309, 658, 997, 1018, 1036, 1039, 1085
PleI GAGTC 4 cut(s) 116, 181, 509, 575
PpsI GAGTC 4 cut(s) 116, 181, 509, 575
Psp6I CCWGG 1 cut(s) 868
PspGI CCWGG 1 cut(s) 868
PspN4I GGNNCC 2 cut(s) 291, 979
PspPI GGNCC 3 cut(s) 412, 866, 935
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 2 cut(s) 727, 977
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 4 cut(s) 155, 279, 425, 633
RsaNI GTAC 4 cut(s) 154, 278, 424, 632
RseI CAYNNNNRTG 1 cut(s) 1105
SapI GCTCTTC 1 cut(s) 956
SaqAI TTAA 6 cut(s) 417, 501, 639, 678, 1077, 1088
SatI GCNGC 7 cut(s) 308, 657, 996, 1017, 1035, 1038, 1084
Sau3AI GATC 7 cut(s) 196, 616, 727, 913, 970, 977, 1126
Sau96I GGNCC 3 cut(s) 412, 866, 935
SchI GAGTC 4 cut(s) 116, 182, 509, 575
ScrFI CCNGG 1 cut(s) 870
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 6 cut(s) 91, 247, 494, 583, 975, 1016
SmiMI CAYNNNNRTG 1 cut(s) 1105
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 127, 218, 502, 555, 640
SspMI CTAG 3 cut(s) 30, 492, 714
StyD4I CCNGG 1 cut(s) 868
StyI CCWWGG 2 cut(s) 427, 1106
TaaI ACNGT 5 cut(s) 385, 391, 478, 676, 721
TaiI ACGT 3 cut(s) 86, 425, 880
TaqI TCGA 4 cut(s) 176, 686, 775, 969
TaqII GACCGA 1 cut(s) 815
TasI AATT 5 cut(s) 127, 218, 502, 555, 640
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 4 cut(s) 40, 683, 692, 799
Tru1I TTAA 6 cut(s) 417, 501, 639, 678, 1077, 1088
Tru9I TTAA 6 cut(s) 417, 501, 639, 678, 1077, 1088
TscAI CASTG 1 cut(s) 388
TseI GCWGC 7 cut(s) 307, 656, 995, 1016, 1034, 1037, 1083
TspDTI ATGAA 4 cut(s) 497, 801, 1071, 1089
TspGWI ACGGA 1 cut(s) 977
TspRI CASTG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 416
XapI RAATTY 1 cut(s) 555
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 1028
XspI CTAG 3 cut(s) 30, 492, 714
ZraI GACGTC 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.