RLG00000010522

protein KIAA0930 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004749
Physical Location & Seq
Reverse (-)
2356743 .. 2360646
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010522

Sequence Viewer

Length: 1170 bp
ATGCTCCGAGATGGTGAAGAAACCCCCTCCAGATACGAGCTGCTCAGCATGGTGAAGAAGCACTCGAGCTTGTTGGGGAAGACAGTCGTCGACGCCGACGACGCCTCCGATGTCGAAATGGACCCCCGCTTCTGGCACGACGTCCTGGATTTGTACTTCGTTCGCGGCAAAGACTCCCGCGGTCGCCAGGACGATGATCTCGTCTTCTTCGTCAGAAAATTGAGCTCGCTGGGCTTCAACAACGACGTTCCGCCTTACTTTGTACGCAGGTGGGCACCTAAGTTGGATAACTTGATAGGTGAAAAATCGGTAGAGGTGGATTGGAGGCGCTCCTTTCACTTGAATTTGATTGCTCACACTACATTTACTGTAACAGTGGCTATTTGCAGTCATCAGGACCTTCGGAATCATCAAGCTGATCAAGATAAACCATTATCTCCAATATACAAGGTAGTAAAGACTGTTTATGCATCTCCCAGCCGTGTCAACTTTCATTTGGACTCGCAAAAGGAAGTGGAGACAACGCCTGCTTATCCAGATATTTGTTTTGCTGTTGATGACTTTGACTCCACTTTTGATGCTGTGGTATTGACTGATTCAGACCATTGCTATTGTGTAATACTCAATGCACATGATGGGGCAGCATTTCCTAAGGCAAAGGATCCTGATGATTGCAGTTCTAGTGATAGTTCCTCTTTGAAGGTTGACACTAGTTCTGCAAAGGCAAAAAGTTCCAAGCTGACTCTTTTTTCGGGATTTGTCAGCTATCAAATGGTACGAGATGCATATGATGCGGGCAAGTCTCGTTTTGGGAACCTTTTATCACTTGCTCATTCCCCTGGCAAACAAGACAAACTGTACATGAAAGGTCCTGGAGGCCGCGGGGAAGTTGAAGTGGCTGTTTCTGGTGTTGTAGATCAGAGCCAGCAAGATACAGGTCCTTTTTCACCTGTTACATCCAAGAGAGGATTCGGAATTGGCTTTATGGTTCGTAAAGCAGCTTCCGTTGCATCTGTGGCGGCAAAGAATGCCTATGCGGCTGCTGCTTCTAGCCATAGTTTTGACGAGGAGATGATCCCTCTCAAATGTTGCTTGATGTCCATTTCATTACCGTGGGAACACATAGCATATGATCTTCTTTTTAAGGGCACTCCTCCTGTGAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2045

Protein Analysis

390

Amino Acids

42.99

Weight (kDa)

5.84

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2045 PF09741 43 - 304 3.9e-77 Uncharacterized conserved protein (DUF2045)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 258
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 90
AccII CGCG 3 cut(s) 165, 180, 882
AclWI GGATC 3 cut(s) 656, 669, 1069
AcsI RAATTY 1 cut(s) 343
AcyI GRCGYC 3 cut(s) 93, 102, 141
AfaI GTAC 4 cut(s) 155, 264, 777, 860
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 4 cut(s) 238, 343, 700, 893
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 4 cut(s) 144, 186, 838, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 7 cut(s) 40, 69, 225, 416, 739, 765, 1001
AluI AGCT 7 cut(s) 40, 69, 225, 416, 739, 765, 1001
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 2 cut(s) 512, 807
AlwI GGATC 3 cut(s) 656, 669, 1069
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 877
ApeKI GCWGC 5 cut(s) 40, 641, 998, 1040, 1043
ApoI RAATTY 1 cut(s) 343
ArsI GACNNNNNNTTYG 4 cut(s) 557, 589, 733, 765
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 4 cut(s) 121, 397, 869, 938
AsuHPI GGTGA 4 cut(s) 26, 64, 311, 939
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 4 cut(s) 121, 397, 869, 938
AxyI CCTNAGG 1 cut(s) 651
BaeGI GKGCMC 2 cut(s) 277, 1151
BamHI GGATCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 985, 1017
BbsI GAAGAC 2 cut(s) 86, 196
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 5 cut(s) 27, 653, 1010, 1027, 1030
BccI CCATC 2 cut(s) 5, 629
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 4 cut(s) 146, 188, 840, 873
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 512, 807
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 3 cut(s) 681, 711, 1050
BfoI RGCGCY 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 1037
BisI GCNGC 9 cut(s) 41, 166, 642, 880, 999, 1020, 1038, 1041, 1044
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 9 cut(s) 42, 167, 643, 881, 1000, 1021, 1039, 1042, 1045
Bme1390I CCNGG 4 cut(s) 146, 188, 840, 873
Bme18I GGWCC 4 cut(s) 121, 397, 869, 938
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 121, 397, 869, 938
BmiI GGNNCC 4 cut(s) 123, 276, 663, 815
BmrFI CCNGG 4 cut(s) 146, 188, 840, 873
BmsI GCATC 5 cut(s) 479, 568, 772, 781, 1019
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 86, 196
BpmI CTGGAG 2 cut(s) 13, 894
Bpu1102I GCTNAGC 1 cut(s) 44
BsaHI GRCGYC 3 cut(s) 93, 102, 141
BsaJI CCNNGG 4 cut(s) 178, 838, 880, 1112
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 551, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 651
Bse3DI GCAATG 1 cut(s) 604
BseBI CCWGG 4 cut(s) 146, 188, 840, 873
BseDI CCNNGG 4 cut(s) 178, 838, 880, 1112
BseGI GGATG 1 cut(s) 956
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 1082, 1143
BseSI GKGCMC 2 cut(s) 277, 1151
BseXI GCAGC 5 cut(s) 27, 653, 1010, 1027, 1030
BseYI CCCAGC 2 cut(s) 229, 476
Bsh1236I CGCG 3 cut(s) 165, 180, 882
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 879
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 512, 807
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 1 cut(s) 879
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 227, 277, 1151
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
Bsp1720I GCTNAGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 879
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 3 cut(s) 165, 180, 882
BspLI GGNNCC 4 cut(s) 123, 276, 663, 815
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 3 cut(s) 656, 669, 1069
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 858
BssECI CCNNGG 4 cut(s) 178, 838, 880, 1112
BssMI GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
BssNI GRCGYC 3 cut(s) 93, 102, 141
Bst2UI CCWGG 4 cut(s) 146, 188, 840, 873
Bst4CI ACNGT 6 cut(s) 85, 370, 376, 463, 858, 1113
BstACI GRCGYC 3 cut(s) 93, 102, 141
BstAPI GCANNNNNTGC 2 cut(s) 791, 1028
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 4 cut(s) 227, 528, 796, 926
BstDEI CTNAG 3 cut(s) 44, 279, 651
BstDSI CCRYGG 3 cut(s) 178, 880, 1112
BstF5I GGATG 1 cut(s) 956
BstFNI CGCG 3 cut(s) 165, 180, 882
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 6 cut(s) 199, 421, 664, 919, 1077, 1135
BstMAI GTCTC 2 cut(s) 512, 807
BstMBI GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 8 cut(s) 101, 231, 791, 1007, 1016, 1028, 1037, 1043
BstNI CCWGG 4 cut(s) 146, 188, 840, 873
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 4 cut(s) 144, 186, 838, 871
BstSLI GKGCMC 2 cut(s) 277, 1151
BstUI CGCG 3 cut(s) 165, 180, 882
BstV1I GCAGC 5 cut(s) 27, 653, 1010, 1027, 1030
BstV2I GAAGAC 2 cut(s) 86, 196
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
Bsu36I CCTNAGG 1 cut(s) 651
BsuRI GGCC 1 cut(s) 879
BtgI CCRYGG 3 cut(s) 178, 880, 1112
BtsCI GGATG 1 cut(s) 956
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 4 cut(s) 227, 528, 796, 926
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 4 cut(s) 121, 397, 869, 938
Cfr42I CCGCGG 2 cut(s) 181, 883
CseI GACGC 2 cut(s) 101, 110
Csp6I GTAC 4 cut(s) 154, 263, 776, 859
CviAII CATG 3 cut(s) 49, 632, 862
CviQI GTAC 4 cut(s) 154, 263, 776, 859
DdeI CTNAG 3 cut(s) 44, 279, 651
DpnI GATC 6 cut(s) 198, 420, 663, 918, 1076, 1134
DpnII GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
EciI GGCGGA 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 227
Eco47I GGWCC 4 cut(s) 121, 397, 869, 938
Eco53kI GAGCTC 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 225
EcoO109I RGGNCCY 3 cut(s) 397, 869, 938
EcoRII CCWGG 4 cut(s) 144, 186, 838, 871
EcoT22I ATGCAT 2 cut(s) 472, 787
EcoT38I GRGCYC 1 cut(s) 227
FaeI CATG 3 cut(s) 52, 635, 865
FatI CATG 3 cut(s) 48, 631, 861
FauI CCCGC 4 cut(s) 134, 185, 787, 875
FauNDI CATATG 2 cut(s) 787, 1129
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 9 cut(s) 41, 166, 642, 880, 999, 1020, 1038, 1041, 1044
FokI GGATG 1 cut(s) 943
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 9 cut(s) 41, 166, 642, 880, 999, 1020, 1038, 1041, 1044
FspBI CTAG 3 cut(s) 681, 711, 1050
GlaI GCGC 1 cut(s) 329
GluI GCNGC 9 cut(s) 41, 166, 642, 880, 999, 1020, 1038, 1041, 1044
GsaI CCCAGC 2 cut(s) 233, 480
GsuI CTGGAG 2 cut(s) 13, 894
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 879
HgaI GACGC 2 cut(s) 101, 110
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 3 cut(s) 93, 102, 141
Hin1II CATG 3 cut(s) 52, 635, 865
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 3 cut(s) 91, 487, 706
HindII GTYRAC 3 cut(s) 91, 487, 706
HinfI GANTC 7 cut(s) 173, 406, 500, 566, 596, 742, 969
HphI GGTGA 4 cut(s) 26, 64, 311, 939
Hpy166II GTNNAC 4 cut(s) 91, 487, 706, 1162
Hpy188I TCNGA 7 cut(s) 8, 109, 215, 405, 601, 921, 974
Hpy188III TCNNGA 6 cut(s) 30, 395, 422, 536, 665, 753
Hpy8I GTNNAC 4 cut(s) 91, 487, 706, 1162
Hpy99I CGWCG 6 cut(s) 92, 95, 101, 104, 143, 248
HpyAV CCTTC 2 cut(s) 410, 694
HpyCH4III ACNGT 6 cut(s) 85, 370, 376, 463, 858, 1113
HpyCH4IV ACGT 2 cut(s) 141, 246
HpyCH4V TGCA 7 cut(s) 387, 470, 629, 675, 719, 785, 1010
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 231, 791, 1007, 1016, 1028, 1037, 1043
HpyF3I CTNAG 3 cut(s) 44, 279, 651
HpySE526I ACGT 2 cut(s) 141, 246
Hsp92I GRCGYC 3 cut(s) 93, 102, 141
Hsp92II CATG 3 cut(s) 52, 635, 865
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 418
KspI CCGCGG 2 cut(s) 181, 883
Kzo9I GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
LmnI GCTCC 2 cut(s) 9, 335
Lsp1109I GCAGC 5 cut(s) 27, 653, 1010, 1027, 1030
LweI GCATC 5 cut(s) 479, 568, 772, 781, 1019
MaeI CTAG 3 cut(s) 681, 711, 1050
MaeII ACGT 2 cut(s) 141, 246
MaeIII GTNAC 2 cut(s) 370, 952
MalI GATC 6 cut(s) 198, 420, 663, 918, 1076, 1134
MboI GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
MboII GAAGA 6 cut(s) 29, 67, 91, 196, 199, 1127
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 3 cut(s) 227, 277, 1151
MluCI AATT 3 cut(s) 218, 343, 975
MlyI GAGTC 4 cut(s) 167, 494, 560, 736
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 2 cut(s) 472, 787
MseI TTAA 1 cut(s) 1143
MslI CAYNNNNRTG 1 cut(s) 1111
MspA1I CMGCKG 2 cut(s) 180, 882
MspR9I CCNGG 4 cut(s) 146, 188, 840, 873
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 4 cut(s) 146, 188, 840, 873
MvnI CGCG 3 cut(s) 165, 180, 882
MwoI GCNNNNNNNGC 8 cut(s) 101, 231, 791, 1007, 1016, 1028, 1037, 1043
NdeI CATATG 2 cut(s) 787, 1129
NdeII GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
NlaIII CATG 3 cut(s) 52, 635, 865
NlaIV GGNNCC 4 cut(s) 123, 276, 663, 815
NsiI ATGCAT 2 cut(s) 472, 787
PaeR7I CTCGAG 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 5 cut(s) 93, 96, 105, 198, 207
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 3 cut(s) 406, 596, 969
PfoI TCCNGGA 2 cut(s) 144, 871
PkrI GCNGC 9 cut(s) 42, 167, 643, 881, 1000, 1021, 1039, 1042, 1045
PleI GAGTC 4 cut(s) 167, 494, 560, 736
PpsI GAGTC 4 cut(s) 167, 494, 560, 736
PpuMI RGGWCCY 3 cut(s) 397, 869, 938
PshAI GACNNNNGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 227
Psp5II RGGWCCY 3 cut(s) 397, 869, 938
Psp6I CCWGG 4 cut(s) 144, 186, 838, 871
PspFI CCCAGC 2 cut(s) 229, 476
PspGI CCWGG 4 cut(s) 144, 186, 838, 871
PspN4I GGNNCC 4 cut(s) 123, 276, 663, 815
PspPI GGNCC 4 cut(s) 121, 397, 869, 938
PspPPI RGGWCCY 3 cut(s) 397, 869, 938
PspXI VCTCGAGB 1 cut(s) 64
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 4 cut(s) 155, 264, 777, 860
RsaNI GTAC 4 cut(s) 154, 263, 776, 859
RseI CAYNNNNRTG 1 cut(s) 1111
SacI GAGCTC 1 cut(s) 227
SacII CCGCGG 2 cut(s) 181, 883
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 1143
SatI GCNGC 9 cut(s) 41, 166, 642, 880, 999, 1020, 1038, 1041, 1044
Sau3AI GATC 6 cut(s) 196, 418, 661, 916, 1074, 1132
Sau96I GGNCC 4 cut(s) 121, 397, 869, 938
SchI GAGTC 4 cut(s) 167, 494, 560, 736
ScrFI CCNGG 4 cut(s) 146, 188, 840, 873
SduI GDGCHC 3 cut(s) 227, 277, 1151
SfaNI GCATC 5 cut(s) 479, 568, 772, 781, 1019
Sfr274I CTCGAG 1 cut(s) 64
Sfr303I CCGCGG 2 cut(s) 181, 883
SgrBI CCGCGG 2 cut(s) 181, 883
SgrDI CGTCGACG 1 cut(s) 89
SinI GGWCC 4 cut(s) 121, 397, 869, 938
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 1111
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 3 cut(s) 218, 343, 975
SspMI CTAG 3 cut(s) 681, 711, 1050
SstI GAGCTC 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 144, 186, 838, 871
TaaI ACNGT 6 cut(s) 85, 370, 376, 463, 858, 1113
TaiI ACGT 2 cut(s) 144, 249
TaqI TCGA 3 cut(s) 65, 90, 114
TasI AATT 3 cut(s) 218, 343, 975
TatI WGTACW 2 cut(s) 153, 858
TauI GCSGC 4 cut(s) 168, 882, 1022, 1040
TfiI GAWTC 3 cut(s) 406, 596, 969
Tru1I TTAA 1 cut(s) 1143
Tru9I TTAA 1 cut(s) 1143
TscAI CASTG 1 cut(s) 381
TseI GCWGC 5 cut(s) 40, 641, 998, 1040, 1043
TspDTI ATGAA 3 cut(s) 482, 878, 1095
TspGWI ACGGA 1 cut(s) 994
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 4 cut(s) 121, 397, 869, 938
XapI RAATTY 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 3 cut(s) 681, 711, 1050
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 2 cut(s) 472, 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.