Rroxscaffold_7G00159010

protein KIAA0930 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004749
Physical Location & Seq
Reverse (-)
2324939 .. 2329428
4490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159010.1

Sequence Viewer

Length: 1281 bp
ATGCTCCGAGATGGTGAAGAAACCCCATCCAGATACGAGCTGCTCAGCATGGTGAAGAAGCACTCGAGCTTGTTGGGGAAGACAGTCGTCGACGCCGACGACGCCTCCGATGTCGAAATGGACCCCCGCTTCTGGCACGACGTCCTGGATTTGTACTTCGTTCGCGGCAAAGACTCCCGCGGTCGCCAGGACGATGATCTCGTCTTCTTCGTCAGAAAAGTGAGCTCGCAGGGCTTCAACGACGACGTTCCGCCTTACTTTGTACGCAGGTGGGCACCTAAGTTGGATAACTTGATAGGTGAAAAATCGGTAGAGGTGGATTGGAGGCGCTCCTTTCACTTGAACTTGATTGCTCACACTACATTTACTGTAACAGTGGCTATTTGCAGGATTTTAGAATCCCCCTCATGGAAATCTCTACAGGAAGTGGAGACAACGCCTGCTTATCCAGATATTTGTTTTGCTGTCGATGACTTTGACTCCACTTTTGATGCTGTGGTATTGACTGATTCAGACCATTGCTATTGTGTAATACTCAATGCACATGATGGGGCAGCATTTCCTAAGGCAAAGGATCCTGATGATTGCAGTTCTAGTGATAGTTCCTCTTTGAAGGTTGACACTAGTTCTGCAAAGGCAAAAAGTTCCAAGCTGACTCTTTTTTCGGGATTTGTCAGCTATCAAATGGTACGAGATGCATATGATGCCGGCAAGTCTCGTTTTGGGAACCTTTTATCACTTGCTCATTCCCCTGGCAAACAAGACAAACTGTACATGAAAGGTCCTGGAGGCCGCGGGGAAGTTGAAGTGGCTGTTTCTGGTGTTGTAGATCAGAGCCAGCAAGATACAGGTCCTTTTTCACCTGTTACATCCAATAGAGGATTCGGAATTGGCTTTATGGTTCGTAAAGCAGCTTCTGTTGCATCTGTGGCAGCAAAGAATGCCTATGCGGCTGCTGCTTCTAGCCATAGTTTTGACGAGGAGATGATCCCTCTCAAATGTTGCTTGATGTCCATTTCATTACCGTGGGAACACATAGCATATGATCTTCTTTTTAAGCTCTTGCTCTCATTTTCGTTCTTCATTCTTTTGAAAACAGGGCACTCCTCCTGTGAACTTGTAAGCAGCATCTTATGTACATTCTCATTGGCAATGAATATTGGAAATGATATGCACCTCCAAGAGGAAAACATGAGACGAGTGGAGATGTTCACCCCCTGTGATAAATGTAAAGATTGGAATTCAGTTGCATATGGGAGCACATGTGCTACTCTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2045

Protein Analysis

426

Amino Acids

47.13

Weight (kDa)

5.33

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2045 PF09741 43 - 275 4.3e-60 Uncharacterized conserved protein (DUF2045)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 258
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 90
AccII CGCG 3 cut(s) 165, 180, 795
AciI CCGC 8 cut(s) 127, 165, 178, 180, 251, 793, 795, 950
AclWI GGATC 3 cut(s) 569, 582, 982
AcsI RAATTY 1 cut(s) 1240
AcyI GRCGYC 3 cut(s) 93, 102, 141
AfaI GTAC 5 cut(s) 155, 264, 690, 773, 1138
AfiI CCNNNNNNNGG 3 cut(s) 132, 408, 1183
AflIII ACRYGT 1 cut(s) 1262
AgsI TTSAA 5 cut(s) 238, 343, 613, 806, 1093
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 4 cut(s) 144, 186, 751, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AluBI AGCT 7 cut(s) 40, 69, 225, 652, 678, 914, 1060
AluI AGCT 7 cut(s) 40, 69, 225, 652, 678, 914, 1060
Alw21I GWGCWC 2 cut(s) 227, 1262
Alw26I GTCTC 3 cut(s) 425, 720, 1189
AlwI GGATC 3 cut(s) 569, 582, 982
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 7 cut(s) 40, 554, 911, 932, 953, 956, 1125
ApoI RAATTY 1 cut(s) 1240
ArsI GACNNNNNNTTYG 4 cut(s) 470, 502, 646, 678
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 121, 782, 851
AsuHPI GGTGA 5 cut(s) 26, 64, 311, 852, 1204
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 3 cut(s) 121, 782, 851
AxyI CCTNAGG 1 cut(s) 564
BaeGI GKGCMC 2 cut(s) 277, 1104
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 898, 930
BbsI GAAGAC 2 cut(s) 86, 196
Bbv12I GWGCWC 2 cut(s) 227, 1262
BbvI GCAGC 7 cut(s) 27, 566, 923, 940, 943, 944, 1137
BccI CCATC 3 cut(s) 5, 34, 542
BciT130I CCWGG 4 cut(s) 146, 188, 753, 786
BcoDI GTCTC 3 cut(s) 425, 720, 1189
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 3 cut(s) 594, 624, 963
BfmI CTRYAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 950
BlpI GCTNAGC 1 cut(s) 44
Bme1390I CCNGG 4 cut(s) 146, 188, 753, 786
Bme18I GGWCC 3 cut(s) 121, 782, 851
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 3 cut(s) 121, 782, 851
BmiI GGNNCC 4 cut(s) 123, 276, 576, 728
BmrFI CCNGG 4 cut(s) 146, 188, 753, 786
BmsI GCATC 5 cut(s) 481, 685, 694, 932, 1137
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 86, 196
BpmI CTGGAG 1 cut(s) 807
Bpu1102I GCTNAGC 1 cut(s) 44
BsaHI GRCGYC 3 cut(s) 93, 102, 141
BsaJI CCNNGG 4 cut(s) 178, 751, 793, 1025
BsaXI ACNNNNNCTCC 6 cut(s) 89, 119, 464, 494, 1249, 1279
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 408, 1183
Bse118I RCCGGY 1 cut(s) 707
Bse21I CCTNAGG 1 cut(s) 564
Bse3DI GCAATG 2 cut(s) 517, 1158
BseBI CCWGG 4 cut(s) 146, 188, 753, 786
BseDI CCNNGG 4 cut(s) 178, 751, 793, 1025
BseGI GGATG 2 cut(s) 26, 869
BseLI CCNNNNNNNGG 3 cut(s) 132, 408, 1183
BseMI GCAATG 2 cut(s) 517, 1158
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 995, 1096
BseSI GKGCMC 2 cut(s) 277, 1104
BseXI GCAGC 7 cut(s) 27, 566, 923, 940, 943, 944, 1137
Bsh1236I CGCG 3 cut(s) 165, 180, 795
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 792
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 227, 1262
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 708
BslI CCNNNNNNNGG 3 cut(s) 132, 408, 1183
BsmAI GTCTC 3 cut(s) 425, 720, 1189
BsmBI CGTCTC 1 cut(s) 1189
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 1 cut(s) 792
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 4 cut(s) 227, 277, 1104, 1262
Bsp1407I TGTACA 2 cut(s) 771, 1136
Bsp143I GATC 5 cut(s) 196, 574, 829, 987, 1045
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 8 cut(s) 127, 165, 178, 180, 251, 793, 795, 950
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 3 cut(s) 165, 180, 795
BspLI GGNNCC 4 cut(s) 123, 276, 576, 728
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 3 cut(s) 569, 582, 982
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 2 cut(s) 517, 1158
BsrFI RCCGGY 1 cut(s) 707
BsrGI TGTACA 2 cut(s) 771, 1136
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 4 cut(s) 178, 751, 793, 1025
BssMI GATC 5 cut(s) 196, 574, 829, 987, 1045
BssNI GRCGYC 3 cut(s) 93, 102, 141
Bst2UI CCWGG 4 cut(s) 146, 188, 753, 786
Bst4CI ACNGT 5 cut(s) 85, 370, 376, 771, 1026
BstACI GRCGYC 3 cut(s) 93, 102, 141
BstAPI GCANNNNNTGC 2 cut(s) 704, 941
BstAUI TGTACA 2 cut(s) 771, 1136
BstC8I GCNNGC 4 cut(s) 227, 441, 709, 839
BstDEI CTNAG 3 cut(s) 44, 279, 564
BstDSI CCRYGG 3 cut(s) 178, 793, 1025
BstENI CCTNNNNNAGG 1 cut(s) 1181
BstF5I GGATG 2 cut(s) 26, 869
BstFNI CGCG 3 cut(s) 165, 180, 795
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 5 cut(s) 199, 577, 832, 990, 1048
BstMAI GTCTC 3 cut(s) 425, 720, 1189
BstMBI GATC 5 cut(s) 196, 574, 829, 987, 1045
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 8 cut(s) 101, 231, 704, 920, 929, 941, 950, 956
BstNI CCWGG 4 cut(s) 146, 188, 753, 786
BstNSI RCATGY 1 cut(s) 1266
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 4 cut(s) 144, 186, 751, 784
BstSFI CTRYAG 1 cut(s) 419
BstSLI GKGCMC 2 cut(s) 277, 1104
BstUI CGCG 3 cut(s) 165, 180, 795
BstV1I GCAGC 7 cut(s) 27, 566, 923, 940, 943, 944, 1137
BstV2I GAAGAC 2 cut(s) 86, 196
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 564
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 3 cut(s) 178, 793, 1025
BtsCI GGATG 2 cut(s) 26, 869
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 4 cut(s) 227, 441, 709, 839
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 121, 782, 851
Cfr42I CCGCGG 2 cut(s) 181, 796
CseI GACGC 2 cut(s) 101, 110
Csp6I GTAC 5 cut(s) 154, 263, 689, 772, 1137
CviAII CATG 6 cut(s) 49, 408, 545, 775, 1192, 1263
CviQI GTAC 5 cut(s) 154, 263, 689, 772, 1137
DdeI CTNAG 3 cut(s) 44, 279, 564
DpnI GATC 5 cut(s) 198, 576, 831, 989, 1047
DpnII GATC 5 cut(s) 196, 574, 829, 987, 1045
EciI GGCGGA 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 227
Eco47I GGWCC 3 cut(s) 121, 782, 851
Eco53kI GAGCTC 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 1181
EcoO109I RGGNCCY 2 cut(s) 782, 851
EcoRI GAATTC 1 cut(s) 1240
EcoRII CCWGG 4 cut(s) 144, 186, 751, 784
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 227
Esp3I CGTCTC 1 cut(s) 1189
FaeI CATG 6 cut(s) 52, 411, 548, 778, 1195, 1266
FatI CATG 6 cut(s) 48, 407, 544, 774, 1191, 1262
FauI CCCGC 3 cut(s) 134, 185, 788
FauNDI CATATG 3 cut(s) 700, 1042, 1252
FblI GTMKAC 1 cut(s) 90
FokI GGATG 2 cut(s) 13, 856
FriOI GRGCYC 1 cut(s) 227
FspBI CTAG 3 cut(s) 594, 624, 963
GlaI GCGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 807
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 792
HapII CCGG 1 cut(s) 708
HgaI GACGC 2 cut(s) 101, 110
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 3 cut(s) 93, 102, 141
Hin1II CATG 6 cut(s) 52, 411, 548, 778, 1195, 1266
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 2 cut(s) 91, 619
HindII GTYRAC 2 cut(s) 91, 619
HinfI GANTC 6 cut(s) 173, 398, 479, 509, 655, 882
HpaII CCGG 1 cut(s) 708
HphI GGTGA 5 cut(s) 26, 64, 311, 852, 1204
Hpy166II GTNNAC 4 cut(s) 91, 619, 1115, 1212
Hpy188I TCNGA 6 cut(s) 8, 109, 215, 514, 834, 887
Hpy188III TCNNGA 4 cut(s) 30, 449, 578, 666
Hpy8I GTNNAC 4 cut(s) 91, 619, 1115, 1212
Hpy99I CGWCG 7 cut(s) 92, 95, 101, 104, 143, 245, 248
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 5 cut(s) 85, 370, 376, 771, 1026
HpyCH4IV ACGT 2 cut(s) 141, 246
HpyCH4V TGCA 8 cut(s) 387, 542, 588, 632, 698, 923, 1174, 1250
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 231, 704, 920, 929, 941, 950, 956
HpyF3I CTNAG 3 cut(s) 44, 279, 564
HpySE526I ACGT 2 cut(s) 141, 246
Hsp92I GRCGYC 3 cut(s) 93, 102, 141
Hsp92II CATG 6 cut(s) 52, 411, 548, 778, 1195, 1266
HspAI GCGC 1 cut(s) 328
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
KspI CCGCGG 2 cut(s) 181, 796
Kzo9I GATC 5 cut(s) 196, 574, 829, 987, 1045
LmnI GCTCC 3 cut(s) 9, 335, 1257
Lsp1109I GCAGC 7 cut(s) 27, 566, 923, 940, 943, 944, 1137
LweI GCATC 5 cut(s) 481, 685, 694, 932, 1137
MaeI CTAG 3 cut(s) 594, 624, 963
MaeII ACGT 2 cut(s) 141, 246
MaeIII GTNAC 2 cut(s) 370, 865
MalI GATC 5 cut(s) 198, 576, 831, 989, 1047
MboI GATC 5 cut(s) 196, 574, 829, 987, 1045
MboII GAAGA 7 cut(s) 29, 67, 91, 196, 199, 1040, 1072
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 4 cut(s) 227, 277, 1104, 1262
MluCI AATT 2 cut(s) 888, 1240
MlyI GAGTC 3 cut(s) 167, 473, 649
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 1 cut(s) 700
MroNI GCCGGC 1 cut(s) 707
MseI TTAA 1 cut(s) 1056
MslI CAYNNNNRTG 1 cut(s) 1024
MspA1I CMGCKG 2 cut(s) 180, 795
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 4 cut(s) 146, 188, 753, 786
Mva1269I GAATGC 1 cut(s) 946
MvaI CCWGG 4 cut(s) 146, 188, 753, 786
MvnI CGCG 3 cut(s) 165, 180, 795
MwoI GCNNNNNNNGC 8 cut(s) 101, 231, 704, 920, 929, 941, 950, 956
NaeI GCCGGC 1 cut(s) 709
NdeI CATATG 3 cut(s) 700, 1042, 1252
NdeII GATC 5 cut(s) 196, 574, 829, 987, 1045
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 6 cut(s) 52, 411, 548, 778, 1195, 1266
NlaIV GGNNCC 4 cut(s) 123, 276, 576, 728
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 1 cut(s) 1266
PaeR7I CTCGAG 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 258
PciI ACATGT 1 cut(s) 1262
PcsI WCGNNNNNNNCGW 5 cut(s) 93, 96, 105, 198, 207
PctI GAATGC 1 cut(s) 946
PdiI GCCGGC 1 cut(s) 709
PfeI GAWTC 3 cut(s) 398, 509, 882
PfoI TCCNGGA 2 cut(s) 144, 784
PleI GAGTC 3 cut(s) 167, 473, 649
PpsI GAGTC 3 cut(s) 167, 473, 649
PpuMI RGGWCCY 2 cut(s) 782, 851
PscI ACATGT 1 cut(s) 1262
PshAI GACNNNNGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 227
Psp5II RGGWCCY 2 cut(s) 782, 851
Psp6I CCWGG 4 cut(s) 144, 186, 751, 784
PspGI CCWGG 4 cut(s) 144, 186, 751, 784
PspN4I GGNNCC 4 cut(s) 123, 276, 576, 728
PspPI GGNCC 3 cut(s) 121, 782, 851
PspPPI RGGWCCY 2 cut(s) 782, 851
PspXI VCTCGAGB 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 5 cut(s) 155, 264, 690, 773, 1138
RsaNI GTAC 5 cut(s) 154, 263, 689, 772, 1137
RseI CAYNNNNRTG 1 cut(s) 1024
SacI GAGCTC 1 cut(s) 227
SacII CCGCGG 2 cut(s) 181, 796
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 1056
Sau3AI GATC 5 cut(s) 196, 574, 829, 987, 1045
Sau96I GGNCC 3 cut(s) 121, 782, 851
SchI GAGTC 3 cut(s) 167, 473, 649
ScrFI CCNGG 4 cut(s) 146, 188, 753, 786
SduI GDGCHC 4 cut(s) 227, 277, 1104, 1262
SfaNI GCATC 5 cut(s) 481, 685, 694, 932, 1137
SfcI CTRYAG 1 cut(s) 419
Sfr274I CTCGAG 1 cut(s) 64
Sfr303I CCGCGG 2 cut(s) 181, 796
SgrBI CCGCGG 2 cut(s) 181, 796
SgrDI CGTCGACG 1 cut(s) 89
SinI GGWCC 3 cut(s) 121, 782, 851
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 1024
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 2 cut(s) 888, 1240
SsiI CCGC 8 cut(s) 127, 165, 178, 180, 251, 793, 795, 950
SspI AATATT 1 cut(s) 1159
SspMI CTAG 3 cut(s) 594, 624, 963
SstI GAGCTC 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 144, 186, 751, 784
TaaI ACNGT 5 cut(s) 85, 370, 376, 771, 1026
TaiI ACGT 2 cut(s) 144, 249
TaqI TCGA 4 cut(s) 65, 90, 114, 468
TasI AATT 2 cut(s) 888, 1240
TatI WGTACW 3 cut(s) 153, 771, 1136
TauI GCSGC 3 cut(s) 168, 795, 953
TfiI GAWTC 3 cut(s) 398, 509, 882
Tru1I TTAA 1 cut(s) 1056
Tru9I TTAA 1 cut(s) 1056
TscAI CASTG 1 cut(s) 381
TseI GCWGC 7 cut(s) 40, 554, 911, 932, 953, 956, 1125
TspDTI ATGAA 4 cut(s) 791, 1008, 1072, 1169
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 3 cut(s) 121, 782, 851
XagI CCTNNNNNAGG 1 cut(s) 1181
XapI RAATTY 1 cut(s) 1240
XceI RCATGY 1 cut(s) 1266
XhoI CTCGAG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 3 cut(s) 594, 624, 963
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.