Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004749

Physical Location & Seq

Genomic Coordinates Reverse (-)

36339577 .. 36343996

Gene Structure 4420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCTCCGCGATGGAGAAGAAACCCCCTCCAGATTCGAATTGTTGAGCATGGTGAAGAAGCATTCGAGCTTGTTAGGGAAAACCGTAGTTGACGCGGACGATGTTTCCGATGTCGAAATGGACCACAAATTTTGGCATGATGTATTGGATTTGTATTTCATTCGTGGCAAGGACTCCAGGGGACGCCAGGACGATGATCTCGTGTTCTTTGTCAGAAAATTGAGCTCTTATGGGCATGGTTCCAGTGACGAAAGTGTTTCTCCTTACTTTGTACGCAGGTGGGCACCTAAGTTGGATAATTTGATCGGTGAAAATAATGTGGAGGTGGATTGGAGGCGTTCGTATTACTTGAACTTGATTGCTCACACTTCATTTACTGTCACAGTGGCTATTTGCAGTCATCAGGACCTTCGGAATCATCAAGCTGAGCAGGGTACACCATTATCTCCAATATATAAGGTCGTAAAGACTGTTTATGCATCTCCAAGCCGTGTCAATTTTCAATTGGACTCAAGAAAGGAAGTGGAGACAACACCTGCTTATCCAGATATTTGTTTCGCAATCGATGACTTCGACTCCACTTTTGATGCTGTGGTCTTGACTGAAACGGACCATTGCTATTGTGTAATTCTCAATGCACATGATGGGGCAGCATTTCCCAGGGTAAAGGAAGAAGATGGTTGCAGTTCCAGTGATAGTTCCTCTTTGAGGGTCGAGACTAATTCTTCAAAGACAAAAAATACTAAGCTGACTCTTTTTTCAGGATTTGTCAGCTATCAAATGGTTCGAGATGCATATGATGCTGGCAAGTCTCGATTTGGGAACCTTCTTGGTCATTCCCCTGGCAAACAAGACAGACTTTACATGAAAGGTCCTGGAGGACGTGGTGAAGTTGAAGTAGCTGTTTCCGGTGTTGCAGATCAAAGCCAACAAGATCTAGGTCCTTTTTCACCTGTTATATCCAAGCAAGGATTTGGAATTGGCTCCATTGTTCGTAAAGCGGCTTCTGTTGCATCTGTTGCTGCAAAGAATGCCTATGCAGCTGCTGCTTCTAGCCATAGTTTTGATGATGAGATGGTACCTCTCAAATGCTGCTTAATGTCCATTACATTACCCTGGGAACACATTGCATATGATCTTCTCTTTAAGGTGAGGTTGTTGTTCCCAGCTGCTAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2045

Protein Analysis

394

Amino Acids

43.63

Weight (kDa)

5.67

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520
fragaria_vesca	FvH4_2g32730 FvH4_2g32730 FvH4_2g32730 FvH4_2g32730
malus_domestica	MD08G1078900.v1.1 MD15G1065900.v1.1
prunus_persica	Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1
pyrus_communis	pycom08g06530 pycom15g06230
rosa_chinensis	RchiOBHm_Chr6g0309951
rosa_laevigata	RLG00000010522
rosa_multiflora	Rmu_sc0000294.1_g000007 Rmu_sc0026843.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159010
rosa_rugosa	Rorug06G0376100 Rorug06G0376200 Rorug06G0376200
rosa_samantha	Rh6AG490000 Rh6BG499400 Rh6CG504300 Rh6DG490500
rosa_wichuraiana	Rw6G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	267, 544
Acc36I	ACCTGC	2 cut(s)	267, 544
Acc65I	GGTACC	1 cut(s)	1078
AccB1I	GGYRCC	2 cut(s)	283, 1078
AccII	CGCG	2 cut(s)	9, 95
AciI	CCGC	3 cut(s)	7, 95, 1001
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	3 cut(s)	273, 436, 1080
AfiI	CCNNNNNNNGG	1 cut(s)	708
AgsI	TTSAA	4 cut(s)	352, 503, 729, 896
AjiI	CACGTC	1 cut(s)	884
AjnI	CCWGG	6 cut(s)	176, 186, 659, 841, 874, 1115
AluBI	AGCT	8 cut(s)	69, 225, 425, 748, 774, 902, 1043, 1169
AluI	AGCT	8 cut(s)	69, 225, 425, 748, 774, 902, 1043, 1169
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	3 cut(s)	521, 710, 816
AlwNI	CAGNNNCTG	1 cut(s)	1046
ApeKI	GCWGC	7 cut(s)	650, 1022, 1040, 1043, 1046, 1092, 1169
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
Asp718I	GGTACC	1 cut(s)	1078
AspS9I	GGNCC	5 cut(s)	121, 406, 610, 872, 941
AsuHPI	GGTGA	5 cut(s)	64, 320, 899, 942, 1162
AsuII	TTCGAA	1 cut(s)	36
AvaII	GGWCC	5 cut(s)	121, 406, 610, 872, 941
BaeGI	GKGCMC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	283, 1078
BanII	GRGCYC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	988, 1020
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	7 cut(s)	662, 1009, 1030, 1033, 1052, 1079, 1156
BccI	CCATC	4 cut(s)	5, 638, 671, 1069
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	6 cut(s)	178, 188, 661, 843, 876, 1117
BcoDI	GTCTC	3 cut(s)	521, 710, 816
BfaI	CTAG	2 cut(s)	938, 1053
BfuAI	ACCTGC	2 cut(s)	267, 544
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	8 cut(s)	651, 1002, 1023, 1041, 1044, 1047, 1093, 1170
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	8 cut(s)	652, 1003, 1024, 1042, 1045, 1048, 1094, 1171
Bme1390I	CCNGG	6 cut(s)	178, 188, 661, 843, 876, 1117
Bme18I	GGWCC	5 cut(s)	121, 406, 610, 872, 941
BmgBI	CACGTC	1 cut(s)	884
BmgT120I	GGNCC	5 cut(s)	121, 406, 610, 872, 941
BmiI	GGNNCC	5 cut(s)	241, 285, 824, 985, 1080
BmrFI	CCNGG	6 cut(s)	178, 188, 661, 843, 876, 1117
BmsI	GCATC	5 cut(s)	488, 577, 781, 790, 1022
BpmI	CTGGAG	3 cut(s)	13, 160, 897
Bpu1102I	GCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	496
Bsa29I	ATCGAT	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	6 cut(s)	177, 659, 660, 841, 1115, 1116
BsaWI	WCCGGW	1 cut(s)	908
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
Bse1I	ACTGG	2 cut(s)	243, 690
Bse3DI	GCAATG	2 cut(s)	613, 1125
BseBI	CCWGG	6 cut(s)	178, 188, 661, 843, 876, 1117
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	6 cut(s)	177, 659, 660, 841, 1115, 1116
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseMI	GCAATG	2 cut(s)	613, 1125
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	243, 690
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	7 cut(s)	662, 1009, 1030, 1033, 1052, 1079, 1156
BseYI	CCCAGC	1 cut(s)	1165
Bsh1236I	CGCG	2 cut(s)	9, 95
BshNI	GGYRCC	2 cut(s)	283, 1078
BshVI	ATCGAT	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	909
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	3 cut(s)	521, 710, 816
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	2 cut(s)	61, 1036
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	227, 286
Bsp143I	GATC	5 cut(s)	196, 303, 919, 934, 1135
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	3 cut(s)	7, 95, 1001
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	564
BspFNI	CGCG	2 cut(s)	9, 95
BspLI	GGNNCC	5 cut(s)	241, 285, 824, 985, 1080
BspMI	ACCTGC	2 cut(s)	267, 544
BspT104I	TTCGAA	1 cut(s)	36
BspT107I	GGYRCC	2 cut(s)	283, 1078
BsrDI	GCAATG	2 cut(s)	613, 1125
BsrI	ACTGG	2 cut(s)	243, 690
BssECI	CCNNGG	6 cut(s)	177, 659, 660, 841, 1115, 1116
BssMI	GATC	5 cut(s)	196, 303, 919, 934, 1135
BssNI	GRCGYC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	6 cut(s)	178, 188, 661, 843, 876, 1117
Bst4CI	ACNGT	4 cut(s)	85, 379, 385, 472
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	4 cut(s)	800, 1019, 1031, 1046
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	805
BstDEI	CTNAG	3 cut(s)	288, 426, 744
BstENI	CCTNNNNNAGG	1 cut(s)	706
BstFNI	CGCG	2 cut(s)	9, 95
BstKTI	GATC	5 cut(s)	199, 306, 922, 937, 1138
BstMAI	GTCTC	3 cut(s)	521, 710, 816
BstMBI	GATC	5 cut(s)	196, 303, 919, 934, 1135
BstMWI	GCNNNNNNNGC	6 cut(s)	800, 1010, 1019, 1031, 1040, 1046
BstNI	CCWGG	6 cut(s)	178, 188, 661, 843, 876, 1117
BstSCI	CCNGG	6 cut(s)	176, 186, 659, 841, 874, 1115
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	2 cut(s)	9, 95
BstV1I	GCAGC	7 cut(s)	662, 1009, 1030, 1033, 1052, 1079, 1156
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
Bsu15I	ATCGAT	1 cut(s)	564
BsuTUI	ATCGAT	1 cut(s)	564
BtgZI	GCGATG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	884
BtsIMutI	CAGTG	3 cut(s)	250, 390, 697
BveI	ACCTGC	2 cut(s)	267, 544
Cac8I	GCNNGC	1 cut(s)	805
CaiI	CAGNNNCTG	1 cut(s)	1046
Cfr13I	GGNCC	5 cut(s)	121, 406, 610, 872, 941
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	2 cut(s)	101, 192
Csp6I	GTAC	3 cut(s)	272, 435, 1079
CspCI	CAANNNNNGTGG	2 cut(s)	113, 148
CviAII	CATG	5 cut(s)	49, 137, 236, 641, 865
CviQI	GTAC	3 cut(s)	272, 435, 1079
DdeI	CTNAG	3 cut(s)	288, 426, 744
DpnI	GATC	5 cut(s)	198, 305, 921, 936, 1137
DpnII	GATC	5 cut(s)	196, 303, 919, 934, 1135
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	5 cut(s)	121, 406, 610, 872, 941
Eco53kI	GAGCTC	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	706
EcoO109I	RGGNCCY	3 cut(s)	406, 872, 941
EcoRII	CCWGG	6 cut(s)	176, 186, 659, 841, 874, 1115
EcoT22I	ATGCAT	2 cut(s)	481, 796
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	5 cut(s)	52, 140, 239, 644, 868
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	5 cut(s)	48, 136, 235, 640, 864
FauNDI	CATATG	2 cut(s)	796, 1132
Fnu4HI	GCNGC	8 cut(s)	651, 1002, 1023, 1041, 1044, 1047, 1093, 1170
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	8 cut(s)	651, 1002, 1023, 1041, 1044, 1047, 1093, 1170
FspBI	CTAG	2 cut(s)	938, 1053
GluI	GCNGC	8 cut(s)	651, 1002, 1023, 1041, 1044, 1047, 1093, 1170
GsaI	CCCAGC	1 cut(s)	1169
GsuI	CTGGAG	3 cut(s)	13, 160, 897
HapII	CCGG	1 cut(s)	909
HgaI	GACGC	2 cut(s)	101, 192
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	5 cut(s)	52, 140, 239, 644, 868
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	6 cut(s)	33, 173, 415, 509, 575, 751
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	5 cut(s)	64, 320, 899, 942, 1162
Hpy166II	GTNNAC	2 cut(s)	91, 437
Hpy188I	TCNGA	3 cut(s)	109, 215, 414
Hpy188III	TCNNGA	9 cut(s)	30, 404, 513, 545, 598, 715, 762, 788, 813
Hpy8I	GTNNAC	2 cut(s)	91, 437
HpyAV	CCTTC	2 cut(s)	419, 836
HpyCH4III	ACNGT	4 cut(s)	85, 379, 385, 472
HpyCH4IV	ACGT	1 cut(s)	883
HpyF10VI	GCNNNNNNNGC	6 cut(s)	800, 1010, 1019, 1031, 1040, 1046
HpyF3I	CTNAG	3 cut(s)	288, 426, 744
HpySE526I	ACGT	1 cut(s)	883
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	52, 140, 239, 644, 868
KpnI	GGTACC	1 cut(s)	1082
Kzo9I	GATC	5 cut(s)	196, 303, 919, 934, 1135
LmnI	GCTCC	2 cut(s)	9, 989
Lsp1109I	GCAGC	7 cut(s)	662, 1009, 1030, 1033, 1052, 1079, 1156
LweI	GCATC	5 cut(s)	488, 577, 781, 790, 1022
MaeI	CTAG	2 cut(s)	938, 1053
MaeII	ACGT	1 cut(s)	883
MaeIII	GTNAC	2 cut(s)	245, 379
MalI	GATC	5 cut(s)	198, 305, 921, 936, 1137
MboI	GATC	5 cut(s)	196, 303, 919, 934, 1135
MboII	GAAGA	6 cut(s)	29, 67, 683, 686, 717, 1130
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	227, 286
MluCI	AATT	9 cut(s)	38, 128, 218, 298, 496, 503, 627, 721, 978
MlyI	GAGTC	4 cut(s)	167, 503, 569, 745
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	8 cut(s)	37, 316, 327, 702, 712, 872, 1092, 1146
Mph1103I	ATGCAT	2 cut(s)	481, 796
MseI	TTAA	2 cut(s)	1097, 1146
MspA1I	CMGCKG	2 cut(s)	1043, 1169
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	6 cut(s)	178, 188, 661, 843, 876, 1117
MunI	CAATTG	1 cut(s)	503
Mva1269I	GAATGC	2 cut(s)	61, 1036
MvaI	CCWGG	6 cut(s)	178, 188, 661, 843, 876, 1117
MvnI	CGCG	2 cut(s)	9, 95
MwoI	GCNNNNNNNGC	6 cut(s)	800, 1010, 1019, 1031, 1040, 1046
NdeI	CATATG	2 cut(s)	796, 1132
NdeII	GATC	5 cut(s)	196, 303, 919, 934, 1135
NlaIII	CATG	5 cut(s)	52, 140, 239, 644, 868
NlaIV	GGNNCC	5 cut(s)	241, 285, 824, 985, 1080
NmuCI	GTSAC	2 cut(s)	245, 379
NsiI	ATGCAT	2 cut(s)	481, 796
NspV	TTCGAA	1 cut(s)	36
PaqCI	CACCTGC	2 cut(s)	267, 544
PasI	CCCWGGG	2 cut(s)	660, 1116
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 198, 570
PctI	GAATGC	2 cut(s)	61, 1036
PfeI	GAWTC	2 cut(s)	33, 415
PfoI	TCCNGGA	1 cut(s)	874
PkrI	GCNGC	8 cut(s)	652, 1003, 1024, 1042, 1045, 1048, 1094, 1171
PleI	GAGTC	4 cut(s)	167, 503, 569, 745
PpsI	GAGTC	4 cut(s)	167, 503, 569, 745
PpuMI	RGGWCCY	3 cut(s)	406, 872, 941
Psp124BI	GAGCTC	1 cut(s)	227
Psp5II	RGGWCCY	3 cut(s)	406, 872, 941
Psp6I	CCWGG	6 cut(s)	176, 186, 659, 841, 874, 1115
PspFI	CCCAGC	1 cut(s)	1165
PspGI	CCWGG	6 cut(s)	176, 186, 659, 841, 874, 1115
PspN4I	GGNNCC	5 cut(s)	241, 285, 824, 985, 1080
PspPI	GGNCC	5 cut(s)	121, 406, 610, 872, 941
PspPPI	RGGWCCY	3 cut(s)	406, 872, 941
PstNI	CAGNNNCTG	1 cut(s)	1046
PsuI	RGATCY	1 cut(s)	934
PvuII	CAGCTG	2 cut(s)	1043, 1169
RsaI	GTAC	3 cut(s)	273, 436, 1080
RsaNI	GTAC	3 cut(s)	272, 435, 1079
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	1097, 1146
SatI	GCNGC	8 cut(s)	651, 1002, 1023, 1041, 1044, 1047, 1093, 1170
Sau3AI	GATC	5 cut(s)	196, 303, 919, 934, 1135
Sau96I	GGNCC	5 cut(s)	121, 406, 610, 872, 941
SchI	GAGTC	4 cut(s)	167, 503, 569, 745
ScrFI	CCNGG	6 cut(s)	178, 188, 661, 843, 876, 1117
SduI	GDGCHC	2 cut(s)	227, 286
SfaNI	GCATC	5 cut(s)	488, 577, 781, 790, 1022
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	5 cut(s)	121, 406, 610, 872, 941
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	9 cut(s)	38, 128, 218, 298, 496, 503, 627, 721, 978
SsiI	CCGC	3 cut(s)	7, 95, 1001
SspMI	CTAG	2 cut(s)	938, 1053
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	6 cut(s)	176, 186, 659, 841, 874, 1115
TaaI	ACNGT	4 cut(s)	85, 379, 385, 472
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	8 cut(s)	36, 65, 114, 564, 573, 714, 787, 814
TasI	AATT	9 cut(s)	38, 128, 218, 298, 496, 503, 627, 721, 978
TauI	GCSGC	1 cut(s)	1004
TfiI	GAWTC	2 cut(s)	33, 415
Tru1I	TTAA	2 cut(s)	1097, 1146
Tru9I	TTAA	2 cut(s)	1097, 1146
TscAI	CASTG	3 cut(s)	250, 390, 697
TseFI	GTSAC	2 cut(s)	245, 379
TseI	GCWGC	7 cut(s)	650, 1022, 1040, 1043, 1046, 1092, 1169
Tsp45I	GTSAC	2 cut(s)	245, 379
TspDTI	ATGAA	3 cut(s)	148, 360, 881
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	3 cut(s)	250, 390, 697
VpaK11BI	GGWCC	5 cut(s)	121, 406, 610, 872, 941
XagI	CCTNNNNNAGG	1 cut(s)	706
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	2 cut(s)	938, 1053
Zsp2I	ATGCAT	2 cut(s)	481, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.