Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000294.1

Orthogroup ID

OG0004749

Physical Location & Seq

Genomic Coordinates Forward (+)

27269 .. 30786

Gene Structure 3518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000294.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atggccgccactacctcctcctccaactgctcaaacttcttcaacttccgatctaatactacgccaaaggtccgagtctcatcaagccacggctgtcgtggcaaggttgatggggtggggatgtggctcatcaacagtgtctcagctgctttctttgcttccttggagcgatgctcttgcatccgcatcgctaccaacgacgatgccgctgacgactccaacgacttgccattgatctttaacgacgggaatcttgaacgacattatatcggtgacaccgccactagccggaggagaacggccgacaaagggaagaaggtgctctcaaatctagcttgcagcaaccatgaaaccgaccttcggaatcatcaagctgatcaagataaaccattatctccaatatacaaggtagtaaagactgtttatgcatctcccagccgtgtcaactttcatttggactcgcaaaaggaagtggagacgacgcctgcttatccagatatttgttttgctgttgatgactttgactccacttttgatgctgtggtattgactgattcagaccattgctattgtgtaatactcaatgcacatgatggggcagcatttcctaaggcaaaggatcctgatgattgcagttctagtgatagttcctctttgaaggttgacactagttctgcaaaggcaaaaagttccaagctgacacttttttcgggatttgtcagctatcaaatggtacgagatgcatatgatgccggcaagtctcgttttgggaaccttttatcacttgctcattcccctggcaaacaagacaaactgtacatgaaaggtcctggaggccgcggggaagttgaagtggctgtttctggtgttgtagatcagagccagcaagatacaggccctttttcacctgttacatccaacagaggattcggaattggctttatggttcgtaaagcagcttccgttgcatctgtagcggcaaagaatgcttatgcggctgctgcttctagccatagttttgacgaggagatgatccctctcaaatgttgcttgatgtccatttcattaccgtgggaacacatagcatatgatcttctttttaagggcactcctcctgtgaacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2045

Protein Analysis

375

Amino Acids

40.46

Weight (kDa)

6.2

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520
fragaria_vesca	FvH4_2g32730 FvH4_2g32730 FvH4_2g32730 FvH4_2g32730
malus_domestica	MD08G1078900.v1.1 MD15G1065900.v1.1
prunus_persica	Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1
pyrus_communis	pycom08g06530 pycom15g06230
rosa_chinensis	RchiOBHm_Chr6g0309951
rosa_laevigata	RLG00000010522
rosa_multiflora	Rmu_sc0000294.1_g000007 Rmu_sc0026843.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159010
rosa_rugosa	Rorug06G0376100 Rorug06G0376200 Rorug06G0376200
rosa_samantha	Rh6AG490000 Rh6BG499400 Rh6CG504300 Rh6DG490500
rosa_wichuraiana	Rw6G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	840
AciI	CCGC	8 cut(s)	6, 184, 207, 279, 838, 840, 977, 995
AclWI	GGATC	3 cut(s)	614, 627, 1027
AcoI	YGGCCR	2 cut(s)	3, 300
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	2 cut(s)	735, 818
AfiI	CCNNNNNNNGG	3 cut(s)	288, 309, 360
AgsI	TTSAA	4 cut(s)	43, 257, 658, 851
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	2 cut(s)	796, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	911, 943
AluBI	AGCT	6 cut(s)	146, 335, 374, 697, 723, 959
AluI	AGCT	6 cut(s)	146, 335, 374, 697, 723, 959
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	4 cut(s)	82, 145, 470, 765
AlwI	GGATC	3 cut(s)	614, 627, 1027
AoxI	GGCC	4 cut(s)	3, 300, 835, 895
ApeKI	GCWGC	6 cut(s)	146, 339, 599, 956, 998, 1001
ArsI	GACNNNNNNTTYG	4 cut(s)	515, 547, 691, 723
AspS9I	GGNCC	3 cut(s)	70, 827, 896
AsuHPI	GGTGA	2 cut(s)	284, 897
AvaII	GGWCC	2 cut(s)	70, 827
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	1109
BamHI	GGATCC	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	943, 975
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	6 cut(s)	133, 351, 611, 968, 985, 988
BccI	CCATC	2 cut(s)	104, 587
BceAI	ACGGC	3 cut(s)	106, 315, 423
BcgI	CGANNNNNNTGC	4 cut(s)	159, 169, 193, 203
BciT130I	CCWGG	2 cut(s)	798, 831
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	4 cut(s)	82, 145, 470, 765
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	5 cut(s)	285, 332, 639, 669, 1008
BfmI	CTRYAG	1 cut(s)	972
Bme1390I	CCNGG	2 cut(s)	798, 831
Bme18I	GGWCC	2 cut(s)	70, 827
BmgT120I	GGNCC	3 cut(s)	70, 827, 896
BmiI	GGNNCC	2 cut(s)	621, 773
BmrFI	CCNGG	2 cut(s)	798, 831
BmsI	GCATC	9 cut(s)	161, 189, 193, 195, 437, 526, 730, 739, 977
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	1 cut(s)	852
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	5 cut(s)	88, 162, 796, 838, 1070
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 309, 360
Bse118I	RCCGGY	1 cut(s)	752
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	798, 831
BseDI	CCNNGG	5 cut(s)	88, 162, 796, 838, 1070
BseGI	GGATG	3 cut(s)	126, 180, 914
BseLI	CCNNNNNNNGG	3 cut(s)	288, 309, 360
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	5 cut(s)	7, 10, 307, 1040, 1101
BseSI	GKGCMC	1 cut(s)	1109
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	6 cut(s)	133, 351, 611, 968, 985, 988
BseYI	CCCAGC	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	840
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	5, 302, 837, 897
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	289, 753
BslI	CCNNNNNNNGG	3 cut(s)	288, 309, 360
BsmAI	GTCTC	4 cut(s)	82, 145, 470, 765
BsmBI	CGTCTC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	991
BsnI	GGCC	4 cut(s)	5, 302, 837, 897
Bsp1286I	GDGCHC	2 cut(s)	324, 1109
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
BspACI	CCGC	8 cut(s)	6, 184, 207, 279, 838, 840, 977, 995
BspANI	GGCC	4 cut(s)	5, 302, 837, 897
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	840
BspLI	GGNNCC	2 cut(s)	621, 773
BspPI	GGATC	3 cut(s)	614, 627, 1027
BsrDI	GCAATG	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	752
BsrGI	TGTACA	1 cut(s)	816
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	5 cut(s)	88, 162, 796, 838, 1070
BssMI	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
BssNI	GRCGYC	1 cut(s)	482
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	798, 831
Bst4CI	ACNGT	4 cut(s)	137, 421, 816, 1071
BstACI	GRCGYC	1 cut(s)	482
BstAPI	GCANNNNNTGC	2 cut(s)	749, 986
BstAUI	TGTACA	1 cut(s)	816
BstC8I	GCNNGC	4 cut(s)	337, 486, 754, 884
BstDEI	CTNAG	2 cut(s)	142, 609
BstDSI	CCRYGG	3 cut(s)	88, 838, 1070
BstF5I	GGATG	3 cut(s)	126, 180, 914
BstFNI	CGCG	1 cut(s)	840
BstKTI	GATC	7 cut(s)	53, 237, 379, 622, 877, 1035, 1093
BstMAI	GTCTC	4 cut(s)	82, 145, 470, 765
BstMBI	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	8 cut(s)	99, 155, 749, 965, 974, 986, 995, 1001
BstNI	CCWGG	2 cut(s)	798, 831
BstSCI	CCNGG	2 cut(s)	796, 829
BstSFI	CTRYAG	1 cut(s)	972
BstSLI	GKGCMC	1 cut(s)	1109
BstUI	CGCG	1 cut(s)	840
BstV1I	GCAGC	6 cut(s)	133, 351, 611, 968, 985, 988
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BstZI	CGGCCG	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	4 cut(s)	5, 302, 837, 897
BtgI	CCRYGG	3 cut(s)	88, 838, 1070
BtgZI	GCGATG	2 cut(s)	172, 184
BtsCI	GGATG	3 cut(s)	126, 180, 914
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	4 cut(s)	337, 486, 754, 884
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	3 cut(s)	70, 827, 896
Cfr42I	CCGCGG	1 cut(s)	841
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	734, 817
CviAII	CATG	3 cut(s)	347, 590, 820
CviQI	GTAC	2 cut(s)	734, 817
DdeI	CTNAG	2 cut(s)	142, 609
DpnI	GATC	7 cut(s)	52, 236, 378, 621, 876, 1034, 1092
DpnII	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
EaeI	YGGCCR	2 cut(s)	3, 300
EagI	CGGCCG	1 cut(s)	300
EclXI	CGGCCG	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	70, 827
Eco52I	CGGCCG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	2 cut(s)	827, 896
EcoRII	CCWGG	2 cut(s)	796, 829
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	2 cut(s)	430, 745
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	3 cut(s)	350, 593, 823
FatI	CATG	3 cut(s)	346, 589, 819
FauI	CCCGC	1 cut(s)	833
FauNDI	CATATG	2 cut(s)	745, 1087
FbaI	TGATCA	1 cut(s)	376
FokI	GGATG	3 cut(s)	133, 167, 901
FspBI	CTAG	5 cut(s)	285, 332, 639, 669, 1008
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	4 cut(s)	5, 302, 837, 897
HapII	CCGG	2 cut(s)	289, 753
HgaI	GACGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	350, 593, 823
HincII	GTYRAC	2 cut(s)	445, 664
HindII	GTYRAC	2 cut(s)	445, 664
HinfI	GANTC	8 cut(s)	75, 215, 250, 364, 458, 524, 554, 927
HpaII	CCGG	2 cut(s)	289, 753
HphI	GGTGA	2 cut(s)	284, 897
Hpy166II	GTNNAC	3 cut(s)	445, 664, 1120
Hpy188I	TCNGA	6 cut(s)	50, 74, 363, 559, 879, 932
Hpy188III	TCNNGA	5 cut(s)	254, 380, 494, 623, 711
Hpy8I	GTNNAC	3 cut(s)	445, 664, 1120
Hpy99I	CGWCG	3 cut(s)	203, 248, 484
HpyAV	CCTTC	3 cut(s)	310, 368, 652
HpyCH4III	ACNGT	4 cut(s)	137, 421, 816, 1071
HpyCH4V	TGCA	8 cut(s)	180, 339, 428, 587, 633, 677, 743, 968
HpyF10VI	GCNNNNNNNGC	8 cut(s)	99, 155, 749, 965, 974, 986, 995, 1001
HpyF3I	CTNAG	2 cut(s)	142, 609
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	350, 593, 823
KroI	GCCGGC	1 cut(s)	752
KroNI	GCCGGC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	376
KspI	CCGCGG	1 cut(s)	841
Kzo9I	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	6 cut(s)	133, 351, 611, 968, 985, 988
LweI	GCATC	9 cut(s)	161, 189, 193, 195, 437, 526, 730, 739, 977
MaeI	CTAG	5 cut(s)	285, 332, 639, 669, 1008
MaeIII	GTNAC	2 cut(s)	272, 910
MalI	GATC	7 cut(s)	52, 236, 378, 621, 876, 1034, 1092
MboI	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
MboII	GAAGA	3 cut(s)	31, 325, 1085
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	324, 1109
MluCI	AATT	1 cut(s)	933
MlyI	GAGTC	4 cut(s)	84, 209, 452, 518
MmeI	TCCRAC	3 cut(s)	48, 243, 942
Mph1103I	ATGCAT	2 cut(s)	430, 745
MroNI	GCCGGC	1 cut(s)	752
MseI	TTAA	2 cut(s)	240, 1101
MslI	CAYNNNNRTG	1 cut(s)	1069
MspA1I	CMGCKG	3 cut(s)	146, 209, 840
MspI	CCGG	2 cut(s)	289, 753
MspR9I	CCNGG	2 cut(s)	798, 831
Mva1269I	GAATGC	1 cut(s)	991
MvaI	CCWGG	2 cut(s)	798, 831
MvnI	CGCG	1 cut(s)	840
MwoI	GCNNNNNNNGC	8 cut(s)	99, 155, 749, 965, 974, 986, 995, 1001
NaeI	GCCGGC	1 cut(s)	754
NdeI	CATATG	2 cut(s)	745, 1087
NdeII	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
NgoMIV	GCCGGC	1 cut(s)	752
NlaIII	CATG	3 cut(s)	350, 593, 823
NlaIV	GGNNCC	2 cut(s)	621, 773
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	2 cut(s)	430, 745
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 219
PctI	GAATGC	1 cut(s)	991
PdiI	GCCGGC	1 cut(s)	754
PfeI	GAWTC	4 cut(s)	250, 364, 554, 927
PfoI	TCCNGGA	1 cut(s)	829
PleI	GAGTC	4 cut(s)	83, 209, 452, 518
PpsI	GAGTC	4 cut(s)	83, 209, 452, 518
PpuMI	RGGWCCY	1 cut(s)	827
Psp5II	RGGWCCY	1 cut(s)	827
Psp6I	CCWGG	2 cut(s)	796, 829
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	796, 829
PspN4I	GGNNCC	2 cut(s)	621, 773
PspPI	GGNCC	3 cut(s)	70, 827, 896
PspPPI	RGGWCCY	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	735, 818
RsaNI	GTAC	2 cut(s)	734, 817
RseI	CAYNNNNRTG	1 cut(s)	1069
SacII	CCGCGG	1 cut(s)	841
SaqAI	TTAA	2 cut(s)	240, 1101
Sau3AI	GATC	7 cut(s)	50, 234, 376, 619, 874, 1032, 1090
Sau96I	GGNCC	3 cut(s)	70, 827, 896
SchI	GAGTC	4 cut(s)	84, 209, 452, 518
ScrFI	CCNGG	2 cut(s)	798, 831
SduI	GDGCHC	2 cut(s)	324, 1109
SfaNI	GCATC	9 cut(s)	161, 189, 193, 195, 437, 526, 730, 739, 977
SfcI	CTRYAG	1 cut(s)	972
Sfr303I	CCGCGG	1 cut(s)	841
SgrBI	CCGCGG	1 cut(s)	841
SinI	GGWCC	2 cut(s)	70, 827
SmiMI	CAYNNNNRTG	1 cut(s)	1069
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	1 cut(s)	933
SsiI	CCGC	8 cut(s)	6, 184, 207, 279, 838, 840, 977, 995
SspMI	CTAG	5 cut(s)	285, 332, 639, 669, 1008
StyD4I	CCNGG	2 cut(s)	796, 829
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	4 cut(s)	137, 421, 816, 1071
TasI	AATT	1 cut(s)	933
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	5 cut(s)	8, 209, 840, 980, 998
TfiI	GAWTC	4 cut(s)	250, 364, 554, 927
Tru1I	TTAA	2 cut(s)	240, 1101
Tru9I	TTAA	2 cut(s)	240, 1101
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	6 cut(s)	146, 339, 599, 956, 998, 1001
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	363, 440, 836, 1053
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	70, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	5 cut(s)	285, 332, 639, 669, 1008
Zsp2I	ATGCAT	2 cut(s)	430, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.