Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004749

Physical Location & Seq

Genomic Coordinates Forward (+)

66665430 .. 66669402

Gene Structure 3973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG490000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTCCGAGATGGTGAAGAAACCCCCTCCAGATACGAGCTGCTCAGCATGGTGAAGAAGCACTCGAGCTTGTTGGGGAAGACAGTCGTCGTCGACGCCGACGACGCCTCCGATGTCGAAATGGACCCCCGCTTCTGGCACGACGTCCTGGATTTGTACTTCGTTCGCGGCAAAGACTCCCGCGGTCGCCAGGACGATGATCTCGTCTTCTTCGTCAGAAAATTGAGCTCGCAGGGCTTCAACGACGACGTTCCTCCTTACTTTGTACGCAGGTGGGCACCTAAGGAAGTGGAGACGACGCCTGCTTATCCAGATATTTGTTTTGCTGTTGATGACTTTGACTCCACTTTTGATGCTGTGGTATTGACTGATTCAGACCATTGCTATTGTGTAATACTCAATGCACATGATGGGGCAGCATTTCCTAAGGCAAAGGATCCTGATGATTGCAGTTCTAGTGATAGTTCCTCTTTGAAGGTTGACACTAGTTCTGCAAAGGCAAAAAGTTCCAAGCTGACTCTTTTTTCGGGATTTGTCAGCTATCAAATGGTACGAGATGCATACGATGCCGGCAAGTCTCGTTTTGGGAACCTTTTATCACTTGCTCATTCCCCTGGCAAACAAGACAAACTGTACATGAAAGGTCCTGGAGGCCGCGGGGAAGTTGAAGTGGCTGTTTCTGGTGTTGTAGATCAGAGCCAGCAAGATACAGGTCCTTTTTCACCTGTTACATCCAACAGAGGATTCGGAATTGGCTTTATGGTTCGTAAAGCAGCTTCCGTTGCATCTGTGGCGGCAAAGAATGCCTATGCGGCTGCTGCTTCTAGCCATAGTTTTGACGAGGAGATGATCCCTCTCAAATGTTGCTTGATGTCCATTTCATTACCGTGGGAACACATAGCATATGATCTTCTTTTTAAGGGCACTCCTCCTGTGAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2045

Protein Analysis

314

Amino Acids

34.38

Weight (kDa)

5.1

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2045	PF09741	44 - 95	2.2e-09	Uncharacterized conserved protein (DUF2045)
DUF2045	PF09741	95 - 229	1.9e-37	Uncharacterized conserved protein (DUF2045)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520
fragaria_vesca	FvH4_2g32730 FvH4_2g32730 FvH4_2g32730 FvH4_2g32730
malus_domestica	MD08G1078900.v1.1 MD15G1065900.v1.1
prunus_persica	Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1
pyrus_communis	pycom08g06530 pycom15g06230
rosa_chinensis	RchiOBHm_Chr6g0309951
rosa_laevigata	RLG00000010522
rosa_multiflora	Rmu_sc0000294.1_g000007 Rmu_sc0026843.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159010
rosa_rugosa	Rorug06G0376100 Rorug06G0376200 Rorug06G0376200
rosa_samantha	Rh6AG490000 Rh6BG499400 Rh6CG504300 Rh6DG490500
rosa_wichuraiana	Rw6G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	3 cut(s)	168, 183, 657
AciI	CCGC	8 cut(s)	130, 168, 181, 183, 655, 657, 794, 812
AclWI	GGATC	3 cut(s)	431, 444, 844
AcyI	GRCGYC	4 cut(s)	96, 105, 144, 299
AfaI	GTAC	4 cut(s)	158, 267, 552, 635
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	241, 475, 668
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	4 cut(s)	147, 189, 613, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	6 cut(s)	40, 69, 228, 514, 540, 776
AluI	AGCT	6 cut(s)	40, 69, 228, 514, 540, 776
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	2 cut(s)	287, 582
AlwI	GGATC	3 cut(s)	431, 444, 844
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	5 cut(s)	40, 416, 773, 815, 818
ArsI	GACNNNNNNTTYG	4 cut(s)	332, 364, 508, 540
AspS9I	GGNCC	3 cut(s)	124, 644, 713
AsuHPI	GGTGA	3 cut(s)	26, 64, 714
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	124, 644, 713
AxyI	CCTNAGG	2 cut(s)	282, 426
BaeGI	GKGCMC	2 cut(s)	280, 926
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	760, 792
BbsI	GAAGAC	2 cut(s)	86, 199
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	5 cut(s)	27, 428, 785, 802, 805
BccI	CCATC	2 cut(s)	5, 404
BciT130I	CCWGG	4 cut(s)	149, 191, 615, 648
BcoDI	GTCTC	2 cut(s)	287, 582
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	3 cut(s)	456, 486, 825
BfuAI	ACCTGC	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	812
BisI	GCNGC	9 cut(s)	41, 169, 417, 655, 774, 795, 813, 816, 819
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	9 cut(s)	42, 170, 418, 656, 775, 796, 814, 817, 820
Bme1390I	CCNGG	4 cut(s)	149, 191, 615, 648
Bme18I	GGWCC	3 cut(s)	124, 644, 713
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	124, 644, 713
BmiI	GGNNCC	4 cut(s)	126, 279, 438, 590
BmrFI	CCNGG	4 cut(s)	149, 191, 615, 648
BmsI	GCATC	4 cut(s)	343, 547, 556, 794
BoxI	GACNNNNGTC	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	86, 199
BpmI	CTGGAG	2 cut(s)	13, 669
Bpu1102I	GCTNAGC	1 cut(s)	44
BsaHI	GRCGYC	4 cut(s)	96, 105, 144, 299
BsaJI	CCNNGG	4 cut(s)	181, 613, 655, 887
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	569
Bse21I	CCTNAGG	2 cut(s)	282, 426
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	4 cut(s)	149, 191, 615, 648
BseDI	CCNNGG	4 cut(s)	181, 613, 655, 887
BseGI	GGATG	1 cut(s)	731
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	58
BseRI	GAGGAG	2 cut(s)	857, 918
BseSI	GKGCMC	2 cut(s)	280, 926
BseXI	GCAGC	5 cut(s)	27, 428, 785, 802, 805
Bsh1236I	CGCG	3 cut(s)	168, 183, 657
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	287, 582
BsmBI	CGTCTC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	654
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	230, 280, 926
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	199, 436, 691, 849, 907
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	8 cut(s)	130, 168, 181, 183, 655, 657, 794, 812
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	3 cut(s)	168, 183, 657
BspLI	GGNNCC	4 cut(s)	126, 279, 438, 590
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	431, 444, 844
BspT107I	GGYRCC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	569
BsrGI	TGTACA	1 cut(s)	633
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	4 cut(s)	181, 613, 655, 887
BssMI	GATC	5 cut(s)	199, 436, 691, 849, 907
BssNI	GRCGYC	4 cut(s)	96, 105, 144, 299
Bst2UI	CCWGG	4 cut(s)	149, 191, 615, 648
Bst4CI	ACNGT	3 cut(s)	85, 633, 888
BstACI	GRCGYC	4 cut(s)	96, 105, 144, 299
BstAPI	GCANNNNNTGC	2 cut(s)	566, 803
BstAUI	TGTACA	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	230, 303, 571, 701
BstDEI	CTNAG	3 cut(s)	44, 282, 426
BstDSI	CCRYGG	3 cut(s)	181, 655, 887
BstF5I	GGATG	1 cut(s)	731
BstFNI	CGCG	3 cut(s)	168, 183, 657
BstKTI	GATC	5 cut(s)	202, 439, 694, 852, 910
BstMAI	GTCTC	2 cut(s)	287, 582
BstMBI	GATC	5 cut(s)	199, 436, 691, 849, 907
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 234, 566, 782, 791, 803, 812, 818
BstNI	CCWGG	4 cut(s)	149, 191, 615, 648
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSCI	CCNGG	4 cut(s)	147, 189, 613, 646
BstSLI	GKGCMC	2 cut(s)	280, 926
BstUI	CGCG	3 cut(s)	168, 183, 657
BstV1I	GCAGC	5 cut(s)	27, 428, 785, 802, 805
BstV2I	GAAGAC	2 cut(s)	86, 199
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu36I	CCTNAGG	2 cut(s)	282, 426
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	3 cut(s)	181, 655, 887
BtsCI	GGATG	1 cut(s)	731
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	230, 303, 571, 701
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	3 cut(s)	124, 644, 713
Cfr42I	CCGCGG	2 cut(s)	184, 658
CseI	GACGC	3 cut(s)	104, 113, 307
Csp6I	GTAC	4 cut(s)	157, 266, 551, 634
CviAII	CATG	3 cut(s)	49, 407, 637
CviQI	GTAC	4 cut(s)	157, 266, 551, 634
DdeI	CTNAG	3 cut(s)	44, 282, 426
DpnI	GATC	5 cut(s)	201, 438, 693, 851, 909
DpnII	GATC	5 cut(s)	199, 436, 691, 849, 907
Ecl136II	GAGCTC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	124, 644, 713
Eco53kI	GAGCTC	1 cut(s)	228
Eco81I	CCTNAGG	2 cut(s)	282, 426
Eco88I	CYCGRG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	228
EcoO109I	RGGNCCY	2 cut(s)	644, 713
EcoRII	CCWGG	4 cut(s)	147, 189, 613, 646
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	52, 410, 640
FatI	CATG	3 cut(s)	48, 406, 636
FauI	CCCGC	3 cut(s)	137, 188, 650
FauNDI	CATATG	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	9 cut(s)	41, 169, 417, 655, 774, 795, 813, 816, 819
FokI	GGATG	1 cut(s)	718
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	9 cut(s)	41, 169, 417, 655, 774, 795, 813, 816, 819
FspBI	CTAG	3 cut(s)	456, 486, 825
GluI	GCNGC	9 cut(s)	41, 169, 417, 655, 774, 795, 813, 816, 819
GsuI	CTGGAG	2 cut(s)	13, 669
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	3 cut(s)	104, 113, 307
Hin1I	GRCGYC	4 cut(s)	96, 105, 144, 299
Hin1II	CATG	3 cut(s)	52, 410, 640
HincII	GTYRAC	2 cut(s)	94, 481
HindII	GTYRAC	2 cut(s)	94, 481
HinfI	GANTC	5 cut(s)	176, 341, 371, 517, 744
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	3 cut(s)	26, 64, 714
Hpy166II	GTNNAC	3 cut(s)	94, 481, 937
Hpy188I	TCNGA	6 cut(s)	8, 112, 218, 376, 696, 749
Hpy188III	TCNNGA	4 cut(s)	30, 311, 440, 528
Hpy8I	GTNNAC	3 cut(s)	94, 481, 937
Hpy99I	CGWCG	9 cut(s)	92, 95, 98, 104, 107, 146, 248, 251, 301
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	3 cut(s)	85, 633, 888
HpyCH4IV	ACGT	2 cut(s)	144, 249
HpyCH4V	TGCA	5 cut(s)	404, 450, 494, 560, 785
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 234, 566, 782, 791, 803, 812, 818
HpyF3I	CTNAG	3 cut(s)	44, 282, 426
HpySE526I	ACGT	2 cut(s)	144, 249
Hsp92I	GRCGYC	4 cut(s)	96, 105, 144, 299
Hsp92II	CATG	3 cut(s)	52, 410, 640
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
KspI	CCGCGG	2 cut(s)	184, 658
Kzo9I	GATC	5 cut(s)	199, 436, 691, 849, 907
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	5 cut(s)	27, 428, 785, 802, 805
LweI	GCATC	4 cut(s)	343, 547, 556, 794
MaeI	CTAG	3 cut(s)	456, 486, 825
MaeII	ACGT	2 cut(s)	144, 249
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	5 cut(s)	201, 438, 693, 851, 909
MboI	GATC	5 cut(s)	199, 436, 691, 849, 907
MboII	GAAGA	6 cut(s)	29, 67, 91, 199, 202, 902
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	230, 280, 926
MluCI	AATT	2 cut(s)	221, 750
MlyI	GAGTC	3 cut(s)	170, 335, 511
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	9 cut(s)	37, 118, 264, 478, 644, 734, 835, 864, 939
Mph1103I	ATGCAT	1 cut(s)	562
MroNI	GCCGGC	1 cut(s)	569
MseI	TTAA	1 cut(s)	918
MslI	CAYNNNNRTG	1 cut(s)	886
MspA1I	CMGCKG	2 cut(s)	183, 657
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	4 cut(s)	149, 191, 615, 648
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	4 cut(s)	149, 191, 615, 648
MvnI	CGCG	3 cut(s)	168, 183, 657
MwoI	GCNNNNNNNGC	8 cut(s)	104, 234, 566, 782, 791, 803, 812, 818
NaeI	GCCGGC	1 cut(s)	571
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	5 cut(s)	199, 436, 691, 849, 907
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	3 cut(s)	52, 410, 640
NlaIV	GGNNCC	4 cut(s)	126, 279, 438, 590
NsiI	ATGCAT	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	5 cut(s)	96, 99, 108, 201, 210
PctI	GAATGC	1 cut(s)	808
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	371, 744
PfoI	TCCNGGA	2 cut(s)	147, 646
PkrI	GCNGC	9 cut(s)	42, 170, 418, 656, 775, 796, 814, 817, 820
PleI	GAGTC	3 cut(s)	170, 335, 511
PpsI	GAGTC	3 cut(s)	170, 335, 511
PpuMI	RGGWCCY	2 cut(s)	644, 713
PshAI	GACNNNNGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	230
Psp5II	RGGWCCY	2 cut(s)	644, 713
Psp6I	CCWGG	4 cut(s)	147, 189, 613, 646
PspGI	CCWGG	4 cut(s)	147, 189, 613, 646
PspN4I	GGNNCC	4 cut(s)	126, 279, 438, 590
PspPI	GGNCC	3 cut(s)	124, 644, 713
PspPPI	RGGWCCY	2 cut(s)	644, 713
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	4 cut(s)	158, 267, 552, 635
RsaNI	GTAC	4 cut(s)	157, 266, 551, 634
RseI	CAYNNNNRTG	1 cut(s)	886
SacI	GAGCTC	1 cut(s)	230
SacII	CCGCGG	2 cut(s)	184, 658
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	9 cut(s)	41, 169, 417, 655, 774, 795, 813, 816, 819
Sau3AI	GATC	5 cut(s)	199, 436, 691, 849, 907
Sau96I	GGNCC	3 cut(s)	124, 644, 713
SchI	GAGTC	3 cut(s)	170, 335, 511
ScrFI	CCNGG	4 cut(s)	149, 191, 615, 648
SduI	GDGCHC	3 cut(s)	230, 280, 926
SfaNI	GCATC	4 cut(s)	343, 547, 556, 794
Sfr274I	CTCGAG	1 cut(s)	64
Sfr303I	CCGCGG	2 cut(s)	184, 658
SgrBI	CCGCGG	2 cut(s)	184, 658
SgrDI	CGTCGACG	1 cut(s)	92
SinI	GGWCC	3 cut(s)	124, 644, 713
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	886
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	2 cut(s)	221, 750
SsiI	CCGC	8 cut(s)	130, 168, 181, 183, 655, 657, 794, 812
SspMI	CTAG	3 cut(s)	456, 486, 825
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	4 cut(s)	147, 189, 613, 646
TaaI	ACNGT	3 cut(s)	85, 633, 888
TaiI	ACGT	2 cut(s)	147, 252
TaqI	TCGA	3 cut(s)	65, 93, 117
TasI	AATT	2 cut(s)	221, 750
TatI	WGTACW	2 cut(s)	156, 633
TauI	GCSGC	4 cut(s)	171, 657, 797, 815
TfiI	GAWTC	2 cut(s)	371, 744
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TseI	GCWGC	5 cut(s)	40, 416, 773, 815, 818
TspDTI	ATGAA	2 cut(s)	653, 870
TspGWI	ACGGA	1 cut(s)	769
VpaK11BI	GGWCC	3 cut(s)	124, 644, 713
XhoI	CTCGAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	3 cut(s)	456, 486, 825
ZraI	GACGTC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.