Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004749

Physical Location & Seq

Genomic Coordinates Forward (+)

66634811 .. 66638766

Gene Structure 3956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG504300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTCCGAGATGGTGAAGAAACCCCCTCCAGATACGAGCTGCTCAGCATGGTGAAGAAGCACTCGAGCTTGTTGGGGAAGACAGTCGACGACGCCTCCGATGTCGAAATGGACCCCCGCTTCTGGCACGACGTCCTGGATTTGTACTTCGTTCGCGGCAAAGACTCCCGCGGTCGCCAGGACGATGATCTCGTCTTCTTCGTCAGAAAATTGGTATTGACTGATTCAGACCATTGCTATTGTGTAATACTCAATGCACATGATGGGGCAGCATTTCCTAAGGCAAAGGATCCTGATGATTGCAGTTCTAGTGATAGTTCCTCTTTGAAGGTTGACAGTAGTTCTGCAAAGGCAAAAAGTTCCAAGCTGACTCTTTTTTCGGGATTTGTCAGCTATCAAATGGTACGAGATGCATATGATGCCGGCAAGTCTCGTTTTGGGAACCTTTTATCACTTGCTCATTCCCCTGGCAAACAAGACAAACTGTACATGAAAGGTCCTGGAGGCCGCGGGGAAGTTGAAGTGGCTGTTTCTGGTGTTGTAGATCAGAGCCAGCAAGATACAGGTCCTTTTTCACCAGTTACATCCAAGAGAGGATTCGGAATTGGCTTTATGGTTCGTAAAGCAGCTTCCGTTGCATCTGTGGCGGCAAAGAATGCCTATGCGGCTGCTGCTTCTAGCCATAGTTTTGACGAGGAGATGATCCCTCTCAAATGTTGCTTGATGTCCATTTCATTACCGTGGGAACACATAGCATATGATCTTCTTTTTAAGGGCACTCCTCCTGTGAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2045

Protein Analysis

265

Amino Acids

28.9

Weight (kDa)

6.16

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2045	PF09741	40 - 74	2.8e-07	Uncharacterized conserved protein (DUF2045)
DUF2045	PF09741	70 - 180	7.3e-23	Uncharacterized conserved protein (DUF2045)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520 AT1G59520
fragaria_vesca	FvH4_2g32730 FvH4_2g32730 FvH4_2g32730 FvH4_2g32730
malus_domestica	MD08G1078900.v1.1 MD15G1065900.v1.1
prunus_persica	Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1 Prupe.1G419800_v2.0.a1
pyrus_communis	pycom08g06530 pycom15g06230
rosa_chinensis	RchiOBHm_Chr6g0309951
rosa_laevigata	RLG00000010522
rosa_multiflora	Rmu_sc0000294.1_g000007 Rmu_sc0026843.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159010
rosa_rugosa	Rorug06G0376100 Rorug06G0376200 Rorug06G0376200
rosa_samantha	Rh6AG490000 Rh6BG499400 Rh6CG504300 Rh6DG490500
rosa_wichuraiana	Rw6G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	3 cut(s)	156, 171, 510
AciI	CCGC	8 cut(s)	118, 156, 169, 171, 508, 510, 647, 665
AclWI	GGATC	3 cut(s)	284, 297, 697
AcyI	GRCGYC	2 cut(s)	93, 132
AfaI	GTAC	3 cut(s)	146, 405, 488
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	328, 521
AjnI	CCWGG	4 cut(s)	135, 177, 466, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	5 cut(s)	40, 69, 367, 393, 629
AluI	AGCT	5 cut(s)	40, 69, 367, 393, 629
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	3 cut(s)	284, 297, 697
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	5 cut(s)	40, 269, 626, 668, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AspS9I	GGNCC	3 cut(s)	112, 497, 566
AsuHPI	GGTGA	3 cut(s)	26, 64, 567
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	112, 497, 566
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	289
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BbsI	GAAGAC	2 cut(s)	86, 187
BbvI	GCAGC	5 cut(s)	27, 281, 638, 655, 658
BccI	CCATC	2 cut(s)	5, 257
BciT130I	CCWGG	4 cut(s)	137, 179, 468, 501
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	309, 678
BglI	GCCNNNNNGGC	1 cut(s)	665
BisI	GCNGC	9 cut(s)	41, 157, 270, 508, 627, 648, 666, 669, 672
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	9 cut(s)	42, 158, 271, 509, 628, 649, 667, 670, 673
Bme1390I	CCNGG	4 cut(s)	137, 179, 468, 501
Bme18I	GGWCC	3 cut(s)	112, 497, 566
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	112, 497, 566
BmiI	GGNNCC	3 cut(s)	114, 291, 443
BmrFI	CCNGG	4 cut(s)	137, 179, 468, 501
BmsI	GCATC	3 cut(s)	400, 409, 647
BpiI	GAAGAC	2 cut(s)	86, 187
BpmI	CTGGAG	2 cut(s)	13, 522
Bpu1102I	GCTNAGC	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	93, 132
BsaJI	CCNNGG	4 cut(s)	169, 466, 508, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	578
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	4 cut(s)	137, 179, 468, 501
BseDI	CCNNGG	4 cut(s)	169, 466, 508, 740
BseGI	GGATG	1 cut(s)	584
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	578
BseRI	GAGGAG	2 cut(s)	710, 771
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	5 cut(s)	27, 281, 638, 655, 658
Bsh1236I	CGCG	3 cut(s)	156, 171, 510
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	507
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	187, 289, 544, 702, 760
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	8 cut(s)	118, 156, 169, 171, 508, 510, 647, 665
BspANI	GGCC	1 cut(s)	507
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	3 cut(s)	156, 171, 510
BspLI	GGNNCC	3 cut(s)	114, 291, 443
BspPI	GGATC	3 cut(s)	284, 297, 697
BsrDI	GCAATG	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	422
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	4 cut(s)	169, 466, 508, 740
BssMI	GATC	5 cut(s)	187, 289, 544, 702, 760
BssNI	GRCGYC	2 cut(s)	93, 132
Bst2UI	CCWGG	4 cut(s)	137, 179, 468, 501
Bst4CI	ACNGT	4 cut(s)	85, 338, 486, 741
BstACI	GRCGYC	2 cut(s)	93, 132
BstAPI	GCANNNNNTGC	2 cut(s)	419, 656
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	424, 554
BstDEI	CTNAG	2 cut(s)	44, 279
BstDSI	CCRYGG	3 cut(s)	169, 508, 740
BstF5I	GGATG	1 cut(s)	584
BstFNI	CGCG	3 cut(s)	156, 171, 510
BstKTI	GATC	5 cut(s)	190, 292, 547, 705, 763
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	5 cut(s)	187, 289, 544, 702, 760
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	6 cut(s)	419, 635, 644, 656, 665, 671
BstNI	CCWGG	4 cut(s)	137, 179, 468, 501
BstSCI	CCNGG	4 cut(s)	135, 177, 466, 499
BstSLI	GKGCMC	1 cut(s)	779
BstUI	CGCG	3 cut(s)	156, 171, 510
BstV1I	GCAGC	5 cut(s)	27, 281, 638, 655, 658
BstV2I	GAAGAC	2 cut(s)	86, 187
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	507
BtgI	CCRYGG	3 cut(s)	169, 508, 740
BtsCI	GGATG	1 cut(s)	584
Cac8I	GCNNGC	2 cut(s)	424, 554
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	112, 497, 566
Cfr42I	CCGCGG	2 cut(s)	172, 511
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	145, 404, 487
CviAII	CATG	3 cut(s)	49, 260, 490
CviQI	GTAC	3 cut(s)	145, 404, 487
DdeI	CTNAG	2 cut(s)	44, 279
DpnI	GATC	5 cut(s)	189, 291, 546, 704, 762
DpnII	GATC	5 cut(s)	187, 289, 544, 702, 760
Eco47I	GGWCC	3 cut(s)	112, 497, 566
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	497, 566
EcoRII	CCWGG	4 cut(s)	135, 177, 466, 499
EcoT22I	ATGCAT	1 cut(s)	415
FaeI	CATG	3 cut(s)	52, 263, 493
FatI	CATG	3 cut(s)	48, 259, 489
FauI	CCCGC	3 cut(s)	125, 176, 503
FauNDI	CATATG	2 cut(s)	415, 757
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	9 cut(s)	41, 157, 270, 508, 627, 648, 666, 669, 672
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	9 cut(s)	41, 157, 270, 508, 627, 648, 666, 669, 672
FspBI	CTAG	2 cut(s)	309, 678
GluI	GCNGC	9 cut(s)	41, 157, 270, 508, 627, 648, 666, 669, 672
GsuI	CTGGAG	2 cut(s)	13, 522
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	93, 132
Hin1II	CATG	3 cut(s)	52, 263, 493
HincII	GTYRAC	2 cut(s)	88, 334
HindII	GTYRAC	2 cut(s)	88, 334
HinfI	GANTC	4 cut(s)	164, 224, 370, 597
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	3 cut(s)	26, 64, 567
Hpy166II	GTNNAC	3 cut(s)	88, 334, 790
Hpy188I	TCNGA	6 cut(s)	8, 100, 206, 229, 549, 602
Hpy188III	TCNNGA	3 cut(s)	30, 293, 381
Hpy8I	GTNNAC	3 cut(s)	88, 334, 790
Hpy99I	CGWCG	3 cut(s)	92, 95, 134
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	4 cut(s)	85, 338, 486, 741
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	257, 303, 347, 413, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	419, 635, 644, 656, 665, 671
HpyF3I	CTNAG	2 cut(s)	44, 279
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	2 cut(s)	93, 132
Hsp92II	CATG	3 cut(s)	52, 263, 493
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
KspI	CCGCGG	2 cut(s)	172, 511
Kzo9I	GATC	5 cut(s)	187, 289, 544, 702, 760
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	5 cut(s)	27, 281, 638, 655, 658
LweI	GCATC	3 cut(s)	400, 409, 647
MaeI	CTAG	2 cut(s)	309, 678
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	5 cut(s)	189, 291, 546, 704, 762
MboI	GATC	5 cut(s)	187, 289, 544, 702, 760
MboII	GAAGA	6 cut(s)	29, 67, 91, 187, 190, 755
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	2 cut(s)	209, 603
MlyI	GAGTC	2 cut(s)	158, 364
MnlI	CCTC	8 cut(s)	37, 106, 331, 497, 587, 688, 717, 792
Mph1103I	ATGCAT	1 cut(s)	415
MroNI	GCCGGC	1 cut(s)	422
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	739
MspA1I	CMGCKG	2 cut(s)	171, 510
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	4 cut(s)	137, 179, 468, 501
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	4 cut(s)	137, 179, 468, 501
MvnI	CGCG	3 cut(s)	156, 171, 510
MwoI	GCNNNNNNNGC	6 cut(s)	419, 635, 644, 656, 665, 671
NaeI	GCCGGC	1 cut(s)	424
NdeI	CATATG	2 cut(s)	415, 757
NdeII	GATC	5 cut(s)	187, 289, 544, 702, 760
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	3 cut(s)	52, 263, 493
NlaIV	GGNNCC	3 cut(s)	114, 291, 443
NsiI	ATGCAT	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 189, 198
PctI	GAATGC	1 cut(s)	661
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	224, 597
PfoI	TCCNGGA	2 cut(s)	135, 499
PkrI	GCNGC	9 cut(s)	42, 158, 271, 509, 628, 649, 667, 670, 673
PleI	GAGTC	2 cut(s)	158, 364
PpsI	GAGTC	2 cut(s)	158, 364
PpuMI	RGGWCCY	2 cut(s)	497, 566
Psp5II	RGGWCCY	2 cut(s)	497, 566
Psp6I	CCWGG	4 cut(s)	135, 177, 466, 499
PspGI	CCWGG	4 cut(s)	135, 177, 466, 499
PspN4I	GGNNCC	3 cut(s)	114, 291, 443
PspPI	GGNCC	3 cut(s)	112, 497, 566
PspPPI	RGGWCCY	2 cut(s)	497, 566
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	3 cut(s)	146, 405, 488
RsaNI	GTAC	3 cut(s)	145, 404, 487
RseI	CAYNNNNRTG	1 cut(s)	739
SacII	CCGCGG	2 cut(s)	172, 511
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	9 cut(s)	41, 157, 270, 508, 627, 648, 666, 669, 672
Sau3AI	GATC	5 cut(s)	187, 289, 544, 702, 760
Sau96I	GGNCC	3 cut(s)	112, 497, 566
SchI	GAGTC	2 cut(s)	158, 364
ScrFI	CCNGG	4 cut(s)	137, 179, 468, 501
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	3 cut(s)	400, 409, 647
Sfr274I	CTCGAG	1 cut(s)	64
Sfr303I	CCGCGG	2 cut(s)	172, 511
SgrBI	CCGCGG	2 cut(s)	172, 511
SinI	GGWCC	3 cut(s)	112, 497, 566
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	739
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	209, 603
SsiI	CCGC	8 cut(s)	118, 156, 169, 171, 508, 510, 647, 665
SspMI	CTAG	2 cut(s)	309, 678
StyD4I	CCNGG	4 cut(s)	135, 177, 466, 499
TaaI	ACNGT	4 cut(s)	85, 338, 486, 741
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	65, 87, 105
TasI	AATT	2 cut(s)	209, 603
TatI	WGTACW	2 cut(s)	144, 486
TauI	GCSGC	4 cut(s)	159, 510, 650, 668
TfiI	GAWTC	2 cut(s)	224, 597
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TseI	GCWGC	5 cut(s)	40, 269, 626, 668, 671
TspDTI	ATGAA	2 cut(s)	506, 723
TspGWI	ACGGA	1 cut(s)	622
VpaK11BI	GGWCC	3 cut(s)	112, 497, 566
XhoI	CTCGAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	309, 678
ZraI	GACGTC	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.