Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Reverse (-)

36338097 .. 36338537

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G419700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTCTTCAACCACGAACCGGTCCACTTTAACCGGTTTGAGTGCCCGGTTCAAGAAACCGGACTCACAACAGCCGAAATCCAGGAACTGCTGTCCCTGCTCCAAGAGGGAAACTCAGCCTCTCCAAACTCCGGTTCAGAGGATTCGAACCGAGCAGTTTACTCGGTGGACGAGAAAAAGCTTAGGCGCAAGAAGTCGAACCGTGAGTCAGCCCGGCGGTCCAGATGGAGAAAGAAGAGGCAAGTAGAGGACCTGACCAACGATGTGAACTGGTTGAAAGTACAGAACCGGGAGCTGAAGAACAGGTTGGGCGTGGTTGCCCAAAAGTGTCACGTAACATGGAGAGAAAATGACCGGTTGACGTCCGAGTCCCTAGCCCTAAGGGCCAGACTTTCGGATTTACACTGGAATTTTGTTGCCATGCAGATGCAGTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

147

Amino Acids

17.14

Weight (kDa)

9.69

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AatII	GACGTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	19, 131
AgeI	ACCGGT	3 cut(s)	19, 33, 354
AgsI	TTSAA	3 cut(s)	10, 53, 277
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	4 cut(s)	118, 150, 290, 322
AluBI	AGCT	2 cut(s)	181, 295
AluI	AGCT	2 cut(s)	181, 295
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AsiGI	ACCGGT	3 cut(s)	19, 33, 354
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	4 cut(s)	22, 219, 250, 384
AsuC2I	CCSGG	3 cut(s)	47, 214, 290
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	3 cut(s)	22, 219, 250
AxyI	CCTNAGG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	47
BccI	CCATC	1 cut(s)	219
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	3 cut(s)	47, 214, 290
BfaI	CTAG	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	383
Bme1390I	CCNGG	4 cut(s)	47, 83, 214, 290
Bme18I	GGWCC	3 cut(s)	22, 219, 250
BmgT120I	GGNCC	4 cut(s)	22, 219, 250, 384
BmrFI	CCNGG	4 cut(s)	47, 83, 214, 290
BmsI	GCATC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	146
BpuMI	CCSGG	3 cut(s)	47, 214, 290
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	362
BsaWI	WCCGGW	5 cut(s)	19, 33, 59, 131, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 131
Bse118I	RCCGGY	3 cut(s)	19, 33, 354
Bse1I	ACTGG	2 cut(s)	275, 410
Bse21I	CCTNAGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	19, 131
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	275, 410
BseSI	GKGCMC	1 cut(s)	47
BshFI	GGCC	1 cut(s)	386
BshTI	ACCGGT	3 cut(s)	19, 33, 354
BsiSI	CCGG	8 cut(s)	20, 34, 47, 60, 132, 214, 289, 355
BslFI	GGGAC	2 cut(s)	79, 355
BslI	CCNNNNNNNGG	2 cut(s)	19, 131
BsmFI	GGGAC	2 cut(s)	79, 355
BsnI	GGCC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	146
BsrFI	RCCGGY	3 cut(s)	19, 33, 354
BsrI	ACTGG	2 cut(s)	275, 410
BssAI	RCCGGY	3 cut(s)	19, 33, 354
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	11, 230
BstACI	GRCGYC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	115, 182, 380
BstHHI	GCGC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 383
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	4 cut(s)	45, 81, 212, 288
BstSLI	GKGCMC	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	403
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	3 cut(s)	19, 33, 354
Cfr13I	GGNCC	4 cut(s)	22, 219, 250, 384
Csp6I	GTAC	1 cut(s)	281
CspAI	ACCGGT	3 cut(s)	19, 33, 354
CviAII	CATG	2 cut(s)	339, 421
CviJI	RGCY	7 cut(s)	74, 119, 181, 212, 295, 377, 386
CviKI_1	RGCY	7 cut(s)	74, 119, 181, 212, 295, 377, 386
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	3 cut(s)	115, 182, 380
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	11, 230
EarI	CTCTTC	2 cut(s)	11, 230
Eco47I	GGWCC	3 cut(s)	22, 219, 250
Eco57I	CTGAAG	1 cut(s)	317
Eco81I	CCTNAGG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	342, 424
FaiI	YATR	2 cut(s)	340, 422
FaqI	GGGAC	2 cut(s)	79, 355
FatI	CATG	2 cut(s)	338, 420
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	8 cut(s)	20, 34, 47, 60, 132, 214, 289, 355
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	342, 424
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	4 cut(s)	63, 143, 206, 368
HpaII	CCGG	8 cut(s)	20, 34, 47, 60, 132, 214, 289, 355
Hpy166II	GTNNAC	5 cut(s)	25, 160, 169, 268, 360
Hpy188I	TCNGA	3 cut(s)	139, 367, 397
Hpy188III	TCNNGA	2 cut(s)	53, 222
Hpy8I	GTNNAC	5 cut(s)	25, 160, 169, 268, 360
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	333, 362
HpyCH4V	TGCA	2 cut(s)	424, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 383
HpyF3I	CTNAG	3 cut(s)	115, 182, 380
HpySE526I	ACGT	2 cut(s)	333, 362
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	342, 424
HspAI	GCGC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	105, 292
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	333, 362
MaeIII	GTNAC	3 cut(s)	329, 334, 432
MboII	GAAGA	2 cut(s)	247, 310
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	3 cut(s)	57, 215, 377
MnlI	CCTC	5 cut(s)	100, 130, 133, 231, 241
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	8 cut(s)	20, 34, 47, 60, 132, 214, 289, 355
MspR9I	CCNGG	4 cut(s)	47, 83, 214, 290
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	97, 383
NciI	CCSGG	3 cut(s)	47, 214, 290
NlaIII	CATG	2 cut(s)	342, 424
NmuCI	GTSAC	2 cut(s)	329, 432
NspV	TTCGAA	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	81
PinAI	ACCGGT	3 cut(s)	19, 33, 354
PleI	GAGTC	3 cut(s)	57, 214, 376
PpsI	GAGTC	3 cut(s)	57, 214, 376
Ppu21I	YACGTR	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	4 cut(s)	22, 219, 250, 384
PspPPI	RGGWCCY	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	30
Sau96I	GGNCC	4 cut(s)	22, 219, 250, 384
SchI	GAGTC	3 cut(s)	57, 215, 377
ScrFI	CCNGG	4 cut(s)	47, 83, 214, 290
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	183, 255, 297, 308, 336, 365
SfaNI	GCATC	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	3 cut(s)	22, 219, 250
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	4 cut(s)	45, 81, 212, 288
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	336, 365
TaqI	TCGA	2 cut(s)	146, 197
TasI	AATT	1 cut(s)	409
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	329, 432
Tsp45I	GTSAC	2 cut(s)	329, 432
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	22, 219, 250
XapI	RAATTY	1 cut(s)	409
XspI	CTAG	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.