Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Forward (+)

66672732 .. 66674933

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG490100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTCTTCAACGGTGCCGAGGAAGCGGTCGAGTTCCAATGCCCAGTCCAAGAGACCGGGCTCACGGCTACAATAGAGGAGCTCATGTCCCTGCTGCAAGAAGGAAACTCAAACTCGAACTCGGGGAGTCCAAACTCCGGTTCCGAGGGCTCGAACGGCCGGGGGGTCTACTCGCTGGATGAGAGAAAGCGGAGGCGCATGACTTCGAACCGGGAGTCGGCCAGGCGGTCCAGGTGGAGGAAGAAGAGGCATTTGGAGGACTTGACGGAGGAGGCGAACCGTTTGAAAATGGAGAACCGGGAGCTGAAGAACAGGTTGGGCTTGGTTGCTCAGAAGTGTTACGTAACATGGAGAGAAAATGAGAGGTTGGAATCCGAATCCCTAGCTCTGTGGGCTAGACTTTCGGATCTGAACCAGCAACTAAATGAAAAATCTGATACCTACCATCAATTAGGGATGCCACTGGTACATGAACTTAAAGGTTATAATCAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

165

Amino Acids

19.11

Weight (kDa)

6.86

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	59 - 106	9.5e-08	Basic region leucine zipper
bZIP_1	PF00170	62 - 114	2.5e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	26, 190, 226
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	2 cut(s)	157, 219
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	3 cut(s)	137, 217, 237
AgsI	TTSAA	2 cut(s)	10, 286
AjnI	CCWGG	2 cut(s)	221, 230
AjuI	GAANNNNNNNTTGG	6 cut(s)	124, 156, 236, 268, 299, 331
AluBI	AGCT	3 cut(s)	82, 304, 386
AluI	AGCT	3 cut(s)	82, 304, 386
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	157, 219
ApeKI	GCWGC	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	4 cut(s)	58, 161, 212, 299
AsuII	TTCGAA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	3 cut(s)	63, 84, 152
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	453
BceAI	ACGGC	2 cut(s)	81, 172
BciT130I	CCWGG	2 cut(s)	223, 232
BcnI	CCSGG	4 cut(s)	58, 161, 212, 299
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	383, 396
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	6 cut(s)	58, 161, 212, 223, 232, 299
Bme18I	GGWCC	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	16, 142
BmrFI	CCNGG	6 cut(s)	58, 161, 212, 223, 232, 299
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	206
BpuMI	CCSGG	4 cut(s)	58, 161, 212, 299
BsaAI	YACGTR	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	18, 144, 160
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 217, 237
Bse1I	ACTGG	2 cut(s)	44, 468
BseBI	CCWGG	2 cut(s)	223, 232
BseDI	CCNNGG	3 cut(s)	18, 144, 160
BseGI	GGATG	2 cut(s)	184, 462
BseLI	CCNNNNNNNGG	3 cut(s)	137, 217, 237
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	44, 468
BseRI	GAGGAG	2 cut(s)	92, 284
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	81
Bsh1285I	CGRYCG	2 cut(s)	30, 160
BshFI	GGCC	2 cut(s)	159, 221
BshNI	GGYRCC	1 cut(s)	14
BsiEI	CGRYCG	2 cut(s)	30, 160
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	5 cut(s)	57, 138, 160, 211, 298
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	137, 217, 237
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	159, 221
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	3 cut(s)	63, 84, 152
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	3 cut(s)	26, 190, 226
BspANI	GGCC	2 cut(s)	159, 221
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	16, 142
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	44, 468
BssECI	CCNNGG	3 cut(s)	18, 144, 160
BssMI	GATC	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	223, 232
Bst4CI	ACNGT	3 cut(s)	14, 281, 495
Bst6I	CTCTTC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	184, 462
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	406
BstMCI	CGRYCG	2 cut(s)	30, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 156, 392
BstNI	CCWGG	2 cut(s)	223, 232
BstSCI	CCNGG	6 cut(s)	56, 159, 210, 221, 230, 297
BstSNI	TACGTA	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	159, 221
BtsCI	GGATG	2 cut(s)	184, 462
BtsIMutI	CAGTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	4 cut(s)	85, 199, 348, 470
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	2 cut(s)	157, 219
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	343
Eco24I	GRGCYC	3 cut(s)	63, 84, 152
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	221, 230
EcoT38I	GRGCYC	3 cut(s)	63, 84, 152
FaeI	CATG	4 cut(s)	88, 202, 351, 473
FaiI	YATR	5 cut(s)	86, 200, 349, 471, 486
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	4 cut(s)	84, 198, 347, 469
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	191, 469
FriOI	GRGCYC	3 cut(s)	63, 84, 152
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	383, 396
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	159, 221
HapII	CCGG	5 cut(s)	57, 138, 160, 211, 298
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	88, 202, 351, 473
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	127, 215, 371, 377
HpaII	CCGG	5 cut(s)	57, 138, 160, 211, 298
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	6 cut(s)	145, 333, 376, 406, 411, 436
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	3 cut(s)	14, 281, 495
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 156, 392
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	88, 202, 351, 473
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	79, 301
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	2 cut(s)	383, 396
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	338, 343
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	3 cut(s)	253, 256, 319
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	3 cut(s)	63, 84, 152
MluCI	AATT	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	136, 224
MmeI	TCCRAC	1 cut(s)	348
MseI	TTAA	1 cut(s)	477
MspI	CCGG	5 cut(s)	57, 138, 160, 211, 298
MspR9I	CCNGG	6 cut(s)	58, 161, 212, 223, 232, 299
MvaI	CCWGG	2 cut(s)	223, 232
MwoI	GCNNNNNNNGC	3 cut(s)	23, 156, 392
NciI	CCSGG	4 cut(s)	58, 161, 212, 299
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	4 cut(s)	88, 202, 351, 473
NlaIV	GGNNCC	2 cut(s)	16, 142
NmeAIII	GCCGAG	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	371, 377
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	2 cut(s)	135, 223
PpsI	GAGTC	2 cut(s)	135, 223
Ppu21I	YACGTR	1 cut(s)	343
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	221, 230
PspGI	CCWGG	2 cut(s)	221, 230
PspN4I	GGNNCC	2 cut(s)	16, 142
PspPI	GGNCC	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	136, 224
ScrFI	CCNGG	6 cut(s)	58, 161, 212, 223, 232, 299
SduI	GDGCHC	3 cut(s)	63, 84, 152
SetI	ASST	9 cut(s)	84, 236, 306, 317, 345, 368, 388, 443, 484
SfaNI	GCATC	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	1 cut(s)	228
SnaBI	TACGTA	1 cut(s)	343
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	26, 190, 226
SspMI	CTAG	2 cut(s)	383, 396
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	6 cut(s)	56, 159, 210, 221, 230, 297
TaaI	ACNGT	3 cut(s)	14, 281, 495
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	4 cut(s)	30, 116, 152, 206
TasI	AATT	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	371, 377
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	441, 486
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	2 cut(s)	383, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.