Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Reverse (-)

6572581 .. 6573039

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1078800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGATGAGTTCTTCAGCCATGTCCTTCATCCATGAACCGGCCGACATGGGCCGCTTCGAGTGTCCGGTTCAAGAAACCGTGCTCACAACAGCCGAGATTCAGGAGCTACTGTCCTTGCTTCAAGCAGGGAACTCGGCCTCCCCAAGCTCAGAGGGGTCGAACCGGGAGGTCGATACAGTTGACGAGAGAAAGCGTAGGCGGATGACGTCAAACCGCGAGTCAGCCCGGCGGTCCAGGTGGAGAAAGAAGAGGCATTTAGAGGACCTGACGAGCGAGGTGGACCGGTTGAAAATAGAGAACCAGGAGCTGAAGAACCGTTTGGGGCTGGTTGCTCAAAAGTGTCACGTATTATGGAGAGAAAATGACCGGATGACATCCGAGTCCTTAGCACTACGTGCAAGACTTTCGGATTTATACCGGATTTTGATTGCCATGCAGACGCAGTACTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

153

Amino Acids

17.66

Weight (kDa)

9.09

Isoelectric Point (pI)

70.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	62 - 108	2.6e-08	Basic region leucine zipper
bZIP_1	PF00170	64 - 119	7.5e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	382
AatII	GACGTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	219
AciI	CCGC	4 cut(s)	55, 202, 217, 232
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	74, 125, 292
AjnI	CCWGG	2 cut(s)	236, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	109, 150, 310
AluI	AGCT	3 cut(s)	109, 150, 310
Alw21I	GWGCWC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	42, 52, 138
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsiGI	ACCGGT	1 cut(s)	285
AspS9I	GGNCC	4 cut(s)	52, 234, 265, 283
AsuC2I	CCSGG	2 cut(s)	167, 229
AvaII	GGWCC	3 cut(s)	234, 265, 283
Bbv12I	GWGCWC	1 cut(s)	87
BcgI	CGANNNNNNTGC	4 cut(s)	117, 151, 390, 424
BciT130I	CCWGG	2 cut(s)	238, 305
BcnI	CCSGG	2 cut(s)	167, 229
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	4 cut(s)	167, 229, 238, 305
Bme18I	GGWCC	3 cut(s)	234, 265, 283
BmgT120I	GGNCC	4 cut(s)	52, 234, 265, 283
BmrFI	CCNGG	4 cut(s)	167, 229, 238, 305
Bpu10I	CCTNAGC	1 cut(s)	388
BpuMI	CCSGG	2 cut(s)	167, 229
BsaAI	YACGTR	2 cut(s)	349, 398
BsaHI	GRCGYC	1 cut(s)	209
BsaWI	WCCGGW	4 cut(s)	67, 285, 369, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 125, 128, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	2 cut(s)	40, 285
BseBI	CCWGG	2 cut(s)	238, 305
BseGI	GGATG	4 cut(s)	30, 210, 377, 378
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	44, 54, 140
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	7 cut(s)	41, 68, 166, 229, 286, 370, 421
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	3 cut(s)	44, 54, 140
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	4 cut(s)	55, 202, 217, 232
BspANI	GGCC	3 cut(s)	44, 54, 140
BspCNI	CTCAG	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	40, 285
BssAI	RCCGGY	2 cut(s)	40, 285
BssNI	GRCGYC	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	238, 305
Bst4CI	ACNGT	4 cut(s)	82, 114, 181, 320
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	2 cut(s)	349, 398
BstDEI	CTNAG	2 cut(s)	151, 388
BstF5I	GGATG	4 cut(s)	30, 210, 377, 378
BstFNI	CGCG	1 cut(s)	219
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	238, 305
BstSCI	CCNGG	4 cut(s)	165, 227, 236, 303
BstUI	CGCG	1 cut(s)	219
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	44, 54, 140
BtsCI	GGATG	4 cut(s)	30, 210, 377, 378
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr10I	RCCGGY	2 cut(s)	40, 285
Cfr13I	GGNCC	4 cut(s)	52, 234, 265, 283
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	448
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	4 cut(s)	22, 35, 49, 436
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	151, 388
DraIII	CACNNNGTG	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	42
Eco47I	GGWCC	3 cut(s)	234, 265, 283
Eco52I	CGGCCG	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	236, 303
FaeI	CATG	4 cut(s)	25, 38, 52, 439
FaiI	YATR	6 cut(s)	23, 36, 50, 355, 418, 437
FatI	CATG	4 cut(s)	21, 34, 48, 435
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	4 cut(s)	17, 217, 364, 385
Fsp4HI	GCNGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	44, 54, 140
HapII	CCGG	7 cut(s)	41, 68, 166, 229, 286, 370, 421
HgaI	GACGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	4 cut(s)	25, 38, 52, 439
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	100, 221, 383
HpaII	CCGG	7 cut(s)	41, 68, 166, 229, 286, 370, 421
Hpy166II	GTNNAC	2 cut(s)	184, 283
Hpy188I	TCNGA	3 cut(s)	154, 382, 412
Hpy188III	TCNNGA	2 cut(s)	74, 104
Hpy8I	GTNNAC	2 cut(s)	184, 283
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	4 cut(s)	82, 114, 181, 320
HpyCH4IV	ACGT	3 cut(s)	209, 348, 397
HpyCH4V	TGCA	2 cut(s)	401, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	151, 388
HpySE526I	ACGT	3 cut(s)	209, 348, 397
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	4 cut(s)	25, 38, 52, 439
LmnI	GCTCC	2 cut(s)	106, 307
MaeII	ACGT	3 cut(s)	209, 348, 397
MaeIII	GTNAC	1 cut(s)	344
MboII	GAAGA	3 cut(s)	6, 262, 325
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	230, 392
MnlI	CCTC	6 cut(s)	148, 151, 163, 246, 256, 271
MspI	CCGG	7 cut(s)	41, 68, 166, 229, 286, 370, 421
MspR9I	CCNGG	4 cut(s)	167, 229, 238, 305
MvaI	CCWGG	2 cut(s)	238, 305
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	167, 229
NlaIII	CATG	4 cut(s)	25, 38, 52, 439
NmeAIII	GCCGAG	2 cut(s)	116, 121
NmuCI	GTSAC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	229, 391
PpsI	GAGTC	2 cut(s)	229, 391
Ppu21I	YACGTR	2 cut(s)	349, 398
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	236, 303
PspGI	CCWGG	2 cut(s)	236, 303
PspPI	GGNCC	4 cut(s)	52, 234, 265, 283
PspPPI	RGGWCCY	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SatI	GCNGC	1 cut(s)	55
Sau96I	GGNCC	4 cut(s)	52, 234, 265, 283
ScaI	AGTACT	1 cut(s)	449
SchI	GAGTC	2 cut(s)	230, 392
ScrFI	CCNGG	4 cut(s)	167, 229, 238, 305
SduI	GDGCHC	1 cut(s)	87
SinI	GGWCC	3 cut(s)	234, 265, 283
SsiI	CCGC	4 cut(s)	55, 202, 217, 232
StyD4I	CCNGG	4 cut(s)	165, 227, 236, 303
TaaI	ACNGT	4 cut(s)	82, 114, 181, 320
TaiI	ACGT	3 cut(s)	212, 351, 400
TaqI	TCGA	3 cut(s)	60, 161, 174
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	19, 51
VpaK11BI	GGWCC	3 cut(s)	234, 265, 283
ZraI	GACGTC	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.