Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Reverse (-)

24737372 .. 24737939

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32711.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATGAGTGCTGCATGTACTTCCTCGCCGTTGTTCTTCACCGGCGCCGACGAGCCGGTCCAGTTCCAATGCCCGATCCAAGAGACCGAGCTGATAGAGGAGCTCCTGTCCCTGCTGCAAGAAGGAAACTCAAAATCGACCTCGGCAAGTCCGAACTCCGGTTCGGATGGCTCGAACCGGGGGGTGTACTCGGTGGACGAGAGAAAGAGGAGGCGCATGACCTCGAACCGGGAGTCGGCGAGGCGGTCCAGGGGGAGAAAGAAGAGGCATTTGGAGGACTTGACGGAGGAGGCGAACCGGTTGAAAATGGAGAACCGGGAGCTGAAGAACCGGTTAGGGTTTGTTGCTGAGAAGTGTCACGTAACGTGGAGAGAAAATGAGCGGTTGGAAGCTGAATCCCTAGCTCTGTGGGCTAGACTTTCCCATCTGAACCGGGTTTTATTTGCCATGCAGACGCTGCAGCAAATTACAGACTTGGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

162

Amino Acids

18.46

Weight (kDa)

8.54

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	66 - 112	7.9e-08	Basic region leucine zipper
bZIP_1	PF00170	68 - 120	1.1e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	2 cut(s)	244, 382
AclWI	GGATC	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	19, 188
AfiI	CCNNNNNNNGG	3 cut(s)	158, 228, 235
AgeI	ACCGGT	2 cut(s)	297, 330
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	91, 103, 322, 392, 404
AluI	AGCT	5 cut(s)	91, 103, 322, 392, 404
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	457
ApeKI	GCWGC	4 cut(s)	11, 115, 457, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AsiGI	ACCGGT	2 cut(s)	297, 330
AspLEI	GCGC	2 cut(s)	47, 216
AspS9I	GGNCC	2 cut(s)	58, 246
AsuC2I	CCSGG	4 cut(s)	179, 230, 317, 434
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	58, 246
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	102, 444, 472
BccI	CCATC	2 cut(s)	161, 432
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	250
BcnI	CCSGG	4 cut(s)	179, 230, 317, 434
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	401, 414
BfmI	CTRYAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	4 cut(s)	12, 116, 458, 461
BlsI	GCNGC	4 cut(s)	13, 117, 459, 462
Bme1390I	CCNGG	5 cut(s)	179, 230, 250, 317, 434
Bme18I	GGWCC	2 cut(s)	58, 246
BmgT120I	GGNCC	2 cut(s)	58, 246
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	5 cut(s)	179, 230, 250, 317, 434
BpuMI	CCSGG	4 cut(s)	179, 230, 317, 434
BsaAI	YACGTR	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	141, 178, 249
BsaWI	WCCGGW	3 cut(s)	158, 297, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 228, 235
Bse118I	RCCGGY	4 cut(s)	41, 55, 297, 330
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	141, 178, 249
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	158, 228, 235
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	3 cut(s)	113, 223, 302
BseXI	GCAGC	3 cut(s)	102, 444, 472
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	2 cut(s)	297, 330
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	9 cut(s)	42, 56, 159, 178, 229, 298, 316, 331, 433
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	158, 228, 235
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	244, 382
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	462
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	382
BsrFI	RCCGGY	4 cut(s)	41, 55, 297, 330
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	4 cut(s)	41, 55, 297, 330
BssECI	CCNNGG	3 cut(s)	141, 178, 249
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	47, 216
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 457
BstNI	CCWGG	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	5 cut(s)	177, 228, 248, 315, 432
BstSFI	CTRYAG	1 cut(s)	458
BstV1I	GCAGC	3 cut(s)	102, 444, 472
BtsCI	GGATG	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	47, 216
Cfr10I	RCCGGY	4 cut(s)	41, 55, 297, 330
Cfr13I	GGNCC	2 cut(s)	58, 246
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	18, 187
CspAI	ACCGGT	2 cut(s)	297, 330
CviAII	CATG	3 cut(s)	15, 217, 448
CviJI	RGCY	8 cut(s)	55, 91, 103, 171, 322, 392, 404, 413
CviKI_1	RGCY	8 cut(s)	55, 91, 103, 171, 322, 392, 404, 413
CviQI	GTAC	2 cut(s)	18, 187
DdeI	CTNAG	1 cut(s)	348
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	58, 246
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	105
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	3 cut(s)	18, 220, 451
FaiI	YATR	3 cut(s)	16, 218, 449
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	3 cut(s)	14, 216, 447
Fnu4HI	GCNGC	4 cut(s)	12, 116, 458, 461
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	4 cut(s)	12, 116, 458, 461
FspBI	CTAG	2 cut(s)	401, 414
GlaI	GCGC	2 cut(s)	46, 215
GluI	GCNGC	4 cut(s)	12, 116, 458, 461
HaeII	RGCGCY	1 cut(s)	48
HapII	CCGG	9 cut(s)	42, 56, 159, 178, 229, 298, 316, 331, 433
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	2 cut(s)	47, 216
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	18, 220, 451
Hin6I	GCGC	2 cut(s)	45, 214
HinP1I	GCGC	2 cut(s)	45, 214
HinfI	GANTC	2 cut(s)	233, 395
HpaII	CCGG	9 cut(s)	42, 56, 159, 178, 229, 298, 316, 331, 433
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	187, 196
Hpy188I	TCNGA	3 cut(s)	153, 166, 429
Hpy8I	GTNNAC	2 cut(s)	187, 196
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	360, 365
HpyCH4V	TGCA	4 cut(s)	14, 118, 451, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 457
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	360, 365
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	18, 220, 451
HspAI	GCGC	2 cut(s)	45, 214
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	100, 108, 319
Lsp1109I	GCAGC	3 cut(s)	102, 444, 472
MaeI	CTAG	2 cut(s)	401, 414
MaeII	ACGT	2 cut(s)	360, 365
MaeIII	GTNAC	2 cut(s)	356, 361
MalI	GATC	1 cut(s)	77
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	28, 274, 337
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	465, 481
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	366
MseI	TTAA	1 cut(s)	480
MspI	CCGG	9 cut(s)	42, 56, 159, 178, 229, 298, 316, 331, 433
MspR9I	CCNGG	5 cut(s)	179, 230, 250, 317, 434
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	410, 457
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	4 cut(s)	179, 230, 317, 434
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	18, 220, 451
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 170, 290
PfeI	GAWTC	1 cut(s)	395
PinAI	ACCGGT	2 cut(s)	297, 330
PkrI	GCNGC	4 cut(s)	13, 117, 459, 462
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	58, 246
PstI	CTGCAG	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	19, 188
RsaNI	GTAC	2 cut(s)	18, 187
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	4 cut(s)	12, 116, 458, 461
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	58, 246
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	5 cut(s)	179, 230, 250, 317, 434
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	9 cut(s)	93, 105, 143, 224, 324, 363, 368, 394, 406
SfcI	CTRYAG	1 cut(s)	458
SfoI	GGCGCC	1 cut(s)	46
SgrAI	CRCCGGYG	1 cut(s)	41
SinI	GGWCC	2 cut(s)	58, 246
Sse9I	AATT	2 cut(s)	465, 481
SsiI	CCGC	2 cut(s)	244, 382
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	401, 414
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	5 cut(s)	177, 228, 248, 315, 432
TaiI	ACGT	2 cut(s)	363, 368
TaqI	TCGA	3 cut(s)	137, 173, 224
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	465, 481
TatI	WGTACW	2 cut(s)	17, 186
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	4 cut(s)	11, 115, 457, 460
Tsp45I	GTSAC	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	58, 246
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	2 cut(s)	401, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.