Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Reverse (-)

3824858 .. 3825316

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGATGAGTTCTTCAGCCATGTTCTTCAACCATGAACCGGCCCACATGGGCCACTTTGAGTGCCCGGTTCAAGAAACCGAGCTCACAACAGCCGAGATTCAAGAGCTACTGTCTTTGCTTCAAGCAGGGAACTCGGCCTCCCCAAGCTCAGAGGGGTCGAACCGGGAGGTCTATACAGTTGACGAGAGAAAGCGTAGGCGGACCATGTCAAATCGCGAGTCAGCCCGGCGGTCCAGGTGGAGAAAGAAGAAGCATTTAGAGGACATGACGAACGAGGTGGAACGGTTGAAAATAGAGAACCTGGAGATGAAGAACCGGTTGGGGGTGGTTGCTCAAAAGTGTCACGTAACATGGAGAGAAAATGACCGCTTGACATCCGAGTCCTTAGCTCTATGTGCGAGACTTTCGGATTTATACCGGATTTTGATTGCCATGGAGATGCAGTACTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

153

Amino Acids

17.77

Weight (kDa)

7.78

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	62 - 107	5.7e-07	Basic region leucine zipper
bZIP_1	PF00170	64 - 115	1.7e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	382
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	202, 232, 370
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	40, 325
AgeI	ACCGGT	1 cut(s)	318
AgsI	TTSAA	5 cut(s)	31, 74, 104, 125, 292
AjnI	CCWGG	2 cut(s)	236, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	4 cut(s)	85, 109, 150, 392
AluI	AGCT	4 cut(s)	85, 109, 150, 392
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	397
AoxI	GGCC	3 cut(s)	42, 52, 138
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsiGI	ACCGGT	1 cut(s)	318
AspS9I	GGNCC	4 cut(s)	43, 52, 204, 234
AsuC2I	CCSGG	3 cut(s)	68, 167, 229
AvaII	GGWCC	2 cut(s)	204, 234
BaeGI	GKGCMC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciT130I	CCWGG	2 cut(s)	238, 305
BcnI	CCSGG	3 cut(s)	68, 167, 229
BcoDI	GTCTC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	5 cut(s)	68, 167, 229, 238, 305
Bme18I	GGWCC	2 cut(s)	204, 234
BmgT120I	GGNCC	4 cut(s)	43, 52, 204, 234
BmrFI	CCNGG	5 cut(s)	68, 167, 229, 238, 305
BmsI	GCATC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	388
BpuMI	CCSGG	3 cut(s)	68, 167, 229
BsaAI	YACGTR	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	435
BsaWI	WCCGGW	2 cut(s)	318, 420
BsaXI	ACNNNNNCTCC	3 cut(s)	125, 155, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 325
Bse118I	RCCGGY	2 cut(s)	40, 318
BseBI	CCWGG	2 cut(s)	238, 305
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	2 cut(s)	40, 325
BseMII	CTCAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	44, 54, 140
BshTI	ACCGGT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	6 cut(s)	41, 68, 166, 229, 319, 421
BslI	CCNNNNNNNGG	2 cut(s)	40, 325
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	44, 54, 140
Bsp1286I	GDGCHC	2 cut(s)	68, 87
Bsp19I	CCATGG	1 cut(s)	435
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	3 cut(s)	202, 232, 370
BspANI	GGCC	3 cut(s)	44, 54, 140
BspCNI	CTCAG	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	40, 318
BssAI	RCCGGY	2 cut(s)	40, 318
BssECI	CCNNGG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	238, 305
Bst4CI	ACNGT	3 cut(s)	114, 181, 288
BstBAI	YACGTR	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	151, 388
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	377
BstFNI	CGCG	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	238, 305
BstSCI	CCNGG	5 cut(s)	66, 165, 227, 236, 303
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	44, 54, 140
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	377
BtuMI	TCGCGA	1 cut(s)	219
Cfr10I	RCCGGY	2 cut(s)	40, 318
Cfr13I	GGNCC	4 cut(s)	43, 52, 204, 234
Csp6I	GTAC	1 cut(s)	448
CspAI	ACCGGT	1 cut(s)	318
CviAII	CATG	7 cut(s)	22, 35, 49, 208, 268, 354, 436
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	151, 388
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	204, 234
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	236, 303
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	7 cut(s)	25, 38, 52, 211, 271, 357, 439
FatI	CATG	7 cut(s)	21, 34, 48, 207, 267, 353, 435
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	44, 54, 140
HapII	CCGG	6 cut(s)	41, 68, 166, 229, 319, 421
Hin1II	CATG	7 cut(s)	25, 38, 52, 211, 271, 357, 439
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	100, 221, 383
HpaII	CCGG	6 cut(s)	41, 68, 166, 229, 319, 421
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	154, 382, 412
Hpy188III	TCNNGA	3 cut(s)	74, 104, 218
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	114, 181, 288
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	151, 388
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	7 cut(s)	25, 38, 52, 211, 271, 357, 439
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	344, 349
MboII	GAAGA	4 cut(s)	6, 19, 262, 325
MhlI	GDGCHC	2 cut(s)	68, 87
MlyI	GAGTC	2 cut(s)	230, 392
MnlI	CCTC	5 cut(s)	148, 151, 163, 256, 271
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	6 cut(s)	41, 68, 166, 229, 319, 421
MspR9I	CCNGG	5 cut(s)	68, 167, 229, 238, 305
MvaI	CCWGG	2 cut(s)	238, 305
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	3 cut(s)	68, 167, 229
NcoI	CCATGG	1 cut(s)	435
NlaIII	CATG	7 cut(s)	25, 38, 52, 211, 271, 357, 439
NmeAIII	GCCGAG	2 cut(s)	116, 121
NmuCI	GTSAC	1 cut(s)	344
NruI	TCGCGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	100
PflFI	GACNNNGTC	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	318
PleI	GAGTC	2 cut(s)	229, 391
PpsI	GAGTC	2 cut(s)	229, 391
Ppu21I	YACGTR	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	236, 303
PspGI	CCWGG	2 cut(s)	236, 303
PspPI	GGNCC	4 cut(s)	43, 52, 204, 234
PsyI	GACNNNGTC	1 cut(s)	208
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	87
Sau96I	GGNCC	4 cut(s)	43, 52, 204, 234
ScaI	AGTACT	1 cut(s)	449
SchI	GAGTC	2 cut(s)	230, 392
ScrFI	CCNGG	5 cut(s)	68, 167, 229, 238, 305
SduI	GDGCHC	2 cut(s)	68, 87
SetI	ASST	9 cut(s)	87, 111, 152, 174, 242, 282, 306, 351, 394
SfaNI	GCATC	1 cut(s)	432
SinI	GGWCC	2 cut(s)	204, 234
SmiMI	CAYNNNNRTG	1 cut(s)	440
SsiI	CCGC	3 cut(s)	202, 232, 370
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	5 cut(s)	66, 165, 227, 236, 303
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	114, 181, 288
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	161
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	51, 326
Tth111I	GACNNNGTC	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	204, 234
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.