Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Forward (+)

67397008 .. 67397481

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTTACTTCAGCGGCTATGTTCTTCAACGGTGCCGAGGAAGCGGTCGAGTTCCAATGCCCAGTCCAAGAGACCGGGCTCACGGCTACAATAGAGGAGCTCATGTCCCTGCTGCAAGAAGGAAACTCAAACTCGAACTCGGGGAGTCCAAACTCCGGTTCCGAGGGCTCGAACGGCCGGGGGGTCTACTCGCTGGATGAGAGAAAGCGGAGGCGCATGACTTCGAACCGGGAGTCGGCCAGGCGGTCCAGGTGGAGGAAGAAGAGGCATTTGGAGGACTTGACGGAGGAGGCGAACCGTTTGAAAATGGAGAACCGGGAGCTGAAGAACAGGTTGGGCTTGGTTGCTCAGAAGTGTTACGTAACATGGAGAGAAAATGAGAGGTTGGAATCCGAATCCCTAGCTCTGTGGGCTAGACTTTCGGATCTGAACCAGGTTTTAGTTGCCATGCAGACGATGCGGTCACAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

157

Amino Acids

18.07

Weight (kDa)

8.66

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	65 - 112	8.6e-08	Basic region leucine zipper
bZIP_1	PF00170	68 - 120	2.2e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	5 cut(s)	14, 44, 208, 244, 460
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	2 cut(s)	175, 237
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	155, 235, 255
AgsI	TTSAA	2 cut(s)	28, 304
AjnI	CCWGG	3 cut(s)	239, 248, 432
AjuI	GAANNNNNNNTTGG	6 cut(s)	142, 174, 254, 286, 317, 349
AluBI	AGCT	3 cut(s)	100, 322, 404
AluI	AGCT	3 cut(s)	100, 322, 404
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	432
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	2 cut(s)	175, 237
ApeKI	GCWGC	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	4 cut(s)	76, 179, 230, 317
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	3 cut(s)	81, 102, 170
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	2 cut(s)	99, 190
BciT130I	CCWGG	3 cut(s)	241, 250, 434
BcnI	CCSGG	4 cut(s)	76, 179, 230, 317
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	401, 414
BisI	GCNGC	2 cut(s)	15, 113
BlsI	GCNGC	2 cut(s)	16, 114
Bme1390I	CCNGG	7 cut(s)	76, 179, 230, 241, 250, 317, 434
Bme18I	GGWCC	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	34, 160
BmrFI	CCNGG	7 cut(s)	76, 179, 230, 241, 250, 317, 434
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	4 cut(s)	76, 179, 230, 317
BsaAI	YACGTR	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	36, 162, 178
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 235, 255
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	3 cut(s)	241, 250, 434
BseDI	CCNNGG	3 cut(s)	36, 162, 178
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	3 cut(s)	155, 235, 255
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	110, 302
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	99
Bsh1285I	CGRYCG	2 cut(s)	48, 178
BshFI	GGCC	2 cut(s)	177, 239
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	2 cut(s)	48, 178
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	5 cut(s)	75, 156, 178, 229, 316
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	155, 235, 255
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	177, 239
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	139
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	81, 102, 170
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	5 cut(s)	14, 44, 208, 244, 460
BspANI	GGCC	2 cut(s)	177, 239
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	34, 160
BspPI	GGATC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	36, 162, 178
BssMI	GATC	1 cut(s)	424
Bst2UI	CCWGG	3 cut(s)	241, 250, 434
Bst4CI	ACNGT	2 cut(s)	32, 299
Bst6I	CTCTTC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	424
BstMCI	CGRYCG	2 cut(s)	48, 178
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 174, 410, 457
BstNI	CCWGG	3 cut(s)	241, 250, 434
BstSCI	CCNGG	7 cut(s)	74, 177, 228, 239, 248, 315, 432
BstSNI	TACGTA	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	177, 239
BtsCI	GGATG	1 cut(s)	202
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	432
CviAII	CATG	4 cut(s)	103, 217, 366, 448
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	175, 237
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	361
Eco24I	GRGCYC	3 cut(s)	81, 102, 170
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	100
EcoRII	CCWGG	3 cut(s)	239, 248, 432
EcoT38I	GRGCYC	3 cut(s)	81, 102, 170
FaeI	CATG	4 cut(s)	106, 220, 369, 451
FaiI	YATR	5 cut(s)	20, 104, 218, 367, 449
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	4 cut(s)	102, 216, 365, 447
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	15, 113
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	3 cut(s)	81, 102, 170
Fsp4HI	GCNGC	2 cut(s)	15, 113
FspBI	CTAG	2 cut(s)	401, 414
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	15, 113
HaeIII	GGCC	2 cut(s)	177, 239
HapII	CCGG	5 cut(s)	75, 156, 178, 229, 316
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	106, 220, 369, 451
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	145, 233, 389, 395
HpaII	CCGG	5 cut(s)	75, 156, 178, 229, 316
Hpy166II	GTNNAC	2 cut(s)	6, 187
Hpy188I	TCNGA	5 cut(s)	163, 351, 394, 424, 429
Hpy8I	GTNNAC	2 cut(s)	6, 187
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	32, 299
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	115, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 174, 410, 457
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	106, 220, 369, 451
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	97, 319
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	447
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	2 cut(s)	401, 414
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	356, 361, 462
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	4 cut(s)	16, 271, 274, 337
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	3 cut(s)	81, 102, 170
MlyI	GAGTC	2 cut(s)	154, 242
MmeI	TCCRAC	1 cut(s)	366
MseI	TTAA	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	5 cut(s)	75, 156, 178, 229, 316
MspR9I	CCNGG	7 cut(s)	76, 179, 230, 241, 250, 317, 434
MvaI	CCWGG	3 cut(s)	241, 250, 434
MwoI	GCNNNNNNNGC	4 cut(s)	41, 174, 410, 457
NciI	CCSGG	4 cut(s)	76, 179, 230, 317
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	4 cut(s)	106, 220, 369, 451
NlaIV	GGNNCC	2 cut(s)	34, 160
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	462
NspV	TTCGAA	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	389, 395
PkrI	GCNGC	2 cut(s)	16, 114
PleI	GAGTC	2 cut(s)	153, 241
PpsI	GAGTC	2 cut(s)	153, 241
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	239, 248, 432
PspGI	CCWGG	3 cut(s)	239, 248, 432
PspN4I	GGNNCC	2 cut(s)	34, 160
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	2 cut(s)	15, 113
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	2 cut(s)	154, 242
ScrFI	CCNGG	7 cut(s)	76, 179, 230, 241, 250, 317, 434
SduI	GDGCHC	3 cut(s)	81, 102, 170
SetI	ASST	8 cut(s)	102, 254, 324, 335, 363, 386, 406, 438
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	246
SnaBI	TACGTA	1 cut(s)	361
SsiI	CCGC	5 cut(s)	14, 44, 208, 244, 460
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	2 cut(s)	401, 414
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	7 cut(s)	74, 177, 228, 239, 248, 315, 432
TaaI	ACNGT	2 cut(s)	32, 299
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	48, 134, 170, 224
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	389, 395
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	2 cut(s)	401, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.