Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016166

Physical Location & Seq

Genomic Coordinates Reverse (-)

5085313 .. 5086044

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCACACACCACCATTACCATTCCCCTTTACACAAAAGTTGTGCACGTAATGGGTGGATCCCATGTGTATCCTTTCCTTCGATTATAAATACTCAACCTCTCCTCTTCGTTCCTTCCCTTTTCTCCTCCTTCCCTCCTCCCCTCCCCTTCACTCAAATGATGATGAGTTCTTCAGCCATGTCCTTCATCCATGAACCGTCCCACATGGGCCACTTCGAGTGTCCGGTTCAAGAAACCGTGCTCACAACAGCCGAGATTCAGGAGCTACTGTCCTTGCTTCAAGCTGGGAACTCGGCCTCCCCAAGCTCAGAGGGGTCGAACCGGGAGGTCGATACAGTTGACGAGAGAAAGCGTAGGCGGATGATGTCAAACCGCGAGTCAGCCCGGCGGTCCAGGTGGAGAAAGAAGAGGCGTTTAGAGGACCTGACGAGCGACGTGGACCGGTTGAAAATAGAGAACCAGGAGCTGAAGAATCGTTTGGGGCTGGTTGCTCAAAAGTGTCACGTATTATGGAGAGAAAATGACCGGATGACATCCGAGTCCTTAGCACTACGTGCAAGACTTTCGGATTTATACCGGATTTTGATTGCCATGCAGACGCAGTGCTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009743 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0080090 GO:0090351 GO:0097305 GO:0140110 GO:1900140 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

206

Amino Acids

23.62

Weight (kDa)

9.33

Isoelectric Point (pI)

75.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	115 - 161	1.7e-08	Basic region leucine zipper
bZIP_1	PF00170	117 - 171	1.6e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59530
fragaria_vesca	FvH4_2g32711
malus_domestica	MD08G1078800.v1.1 MD15G1065800.v1.1
prunus_persica	Prupe.1G419700_v2.0.a1
pyrus_communis	pycom08g06520 pycom15g06220
rosa_chinensis	RchiOBHm_Chr6g0309961
rosa_laevigata	RLG00000010521
rosa_multiflora	Rmu_sc0000294.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159000
rosa_rugosa	Rorug06G0376200
rosa_samantha	Rh6AG490100 Rh6BG499600
rosa_wichuraiana	Rw6G042660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AasI	GACNNNNNNGTC	1 cut(s)	541
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	361, 376, 391
AclWI	GGATC	2 cut(s)	55, 68
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	159, 491
AdeI	CACNNNGTG	1 cut(s)	557
AgeI	ACCGGT	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	233, 284, 451
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	395, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	4 cut(s)	268, 287, 309, 469
AluI	AGCT	4 cut(s)	268, 287, 309, 469
Alw21I	GWGCWC	3 cut(s)	49, 246, 611
Alw44I	GTGCAC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	55, 68
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	3 cut(s)	3, 211, 297
ApaLI	GTGCAC	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AsiGI	ACCGGT	1 cut(s)	444
AspS9I	GGNCC	4 cut(s)	211, 393, 424, 442
AsuC2I	CCSGG	2 cut(s)	326, 388
AvaII	GGWCC	3 cut(s)	393, 424, 442
BaeGI	GKGCMC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	60
Bbv12I	GWGCWC	3 cut(s)	49, 246, 611
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	2 cut(s)	397, 464
BciVI	GTATCC	1 cut(s)	82
BcnI	CCSGG	2 cut(s)	326, 388
BfuI	GTATCC	1 cut(s)	82
Bme1390I	CCNGG	4 cut(s)	326, 388, 397, 464
Bme18I	GGWCC	3 cut(s)	393, 424, 442
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	4 cut(s)	211, 393, 424, 442
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	4 cut(s)	326, 388, 397, 464
Bpu10I	CCTNAGC	1 cut(s)	547
BpuMI	CCSGG	2 cut(s)	326, 388
BsaAI	YACGTR	3 cut(s)	50, 508, 557
BsaWI	WCCGGW	4 cut(s)	226, 444, 528, 579
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 284, 287, 314
Bse118I	RCCGGY	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	397, 464
BseGI	GGATG	4 cut(s)	189, 369, 536, 537
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	3 cut(s)	95, 118, 129
BseSI	GKGCMC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	5, 213, 299
BshTI	ACCGGT	1 cut(s)	444
BsiHKAI	GWGCWC	3 cut(s)	49, 246, 611
BsiSI	CCGG	6 cut(s)	227, 325, 388, 445, 529, 580
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	5, 213, 299
Bsp1286I	GDGCHC	3 cut(s)	49, 246, 611
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	361, 376, 391
BspANI	GGCC	3 cut(s)	5, 213, 299
BspCNI	CTCAG	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	55, 68
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	397, 464
Bst4CI	ACNGT	4 cut(s)	201, 241, 273, 340
Bst6I	CTCTTC	2 cut(s)	113, 404
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstBAI	YACGTR	3 cut(s)	50, 508, 557
BstDEI	CTNAG	2 cut(s)	310, 547
BstF5I	GGATG	4 cut(s)	189, 369, 536, 537
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	2 cut(s)	397, 464
BstSCI	CCNGG	4 cut(s)	324, 386, 395, 462
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	5, 213, 299
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	4 cut(s)	189, 369, 536, 537
BtsI	GCAGTG	1 cut(s)	611
BtsIMutI	CAGTG	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	4 cut(s)	211, 393, 424, 442
CseI	GACGC	1 cut(s)	610
CspAI	ACCGGT	1 cut(s)	444
CviAII	CATG	5 cut(s)	66, 181, 194, 208, 595
DdeI	CTNAG	2 cut(s)	310, 547
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraIII	CACNNNGTG	1 cut(s)	557
DrdI	GACNNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	113, 404
EarI	CTCTTC	2 cut(s)	113, 404
EciI	GGCGGA	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	393, 424, 442
Eco57I	CTGAAG	2 cut(s)	159, 491
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	395, 462
FaeI	CATG	5 cut(s)	69, 184, 197, 211, 598
FaiI	YATR	8 cut(s)	67, 89, 182, 195, 209, 514, 577, 596
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	5 cut(s)	65, 180, 193, 207, 594
FokI	GGATG	4 cut(s)	176, 376, 523, 544
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	5, 213, 299
HapII	CCGG	6 cut(s)	227, 325, 388, 445, 529, 580
HgaI	GACGC	1 cut(s)	610
Hin1II	CATG	5 cut(s)	69, 184, 197, 211, 598
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	259, 380, 475, 542
HpaII	CCGG	6 cut(s)	227, 325, 388, 445, 529, 580
Hpy166II	GTNNAC	3 cut(s)	47, 343, 442
Hpy188I	TCNGA	3 cut(s)	313, 541, 571
Hpy188III	TCNNGA	2 cut(s)	233, 263
Hpy8I	GTNNAC	3 cut(s)	47, 343, 442
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	5 cut(s)	90, 126, 142, 160, 196
HpyCH4III	ACNGT	4 cut(s)	201, 241, 273, 340
HpyCH4IV	ACGT	4 cut(s)	49, 438, 507, 556
HpyCH4V	TGCA	3 cut(s)	47, 560, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	2 cut(s)	310, 547
HpySE526I	ACGT	4 cut(s)	49, 438, 507, 556
Hsp92II	CATG	5 cut(s)	69, 184, 197, 211, 598
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	265, 466
MaeII	ACGT	4 cut(s)	49, 438, 507, 556
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	100, 165, 421, 484
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	49, 246, 611
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	389, 551
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	227, 325, 388, 445, 529, 580
MspR9I	CCNGG	4 cut(s)	326, 388, 397, 464
MvaI	CCWGG	2 cut(s)	397, 464
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	557
NciI	CCSGG	2 cut(s)	326, 388
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	5 cut(s)	69, 184, 197, 211, 598
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	2 cut(s)	275, 280
NmuCI	GTSAC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	259, 475
PinAI	ACCGGT	1 cut(s)	444
PleI	GAGTC	2 cut(s)	388, 550
PpsI	GAGTC	2 cut(s)	388, 550
Ppu21I	YACGTR	3 cut(s)	50, 508, 557
PpuMI	RGGWCCY	1 cut(s)	424
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	395, 462
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	395, 462
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	4 cut(s)	211, 393, 424, 442
PspPPI	RGGWCCY	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	4 cut(s)	211, 393, 424, 442
SchI	GAGTC	2 cut(s)	389, 551
ScrFI	CCNGG	4 cut(s)	326, 388, 397, 464
SduI	GDGCHC	3 cut(s)	49, 246, 611
SinI	GGWCC	3 cut(s)	393, 424, 442
SmiMI	CAYNNNNRTG	1 cut(s)	158
SsiI	CCGC	3 cut(s)	361, 376, 391
StyD4I	CCNGG	4 cut(s)	324, 386, 395, 462
TaaI	ACNGT	4 cut(s)	201, 241, 273, 340
TaiI	ACGT	4 cut(s)	52, 441, 510, 559
TaqI	TCGA	4 cut(s)	83, 219, 320, 333
TfiI	GAWTC	2 cut(s)	259, 475
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	178, 210
TspRI	CASTG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	45
VpaK11BI	GGWCC	3 cut(s)	393, 424, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.