AT1G59850

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007666
Physical Location & Seq
Reverse (-)
22028509 .. 22030261
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59850.1

Sequence Viewer

Length: 1497 bp
ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCATTCACAGCCGGCTATGACGGTTACTGATCTCAAGCAACGAGTCATCGCTTGTCTCAATCGTCTCTCTGATCGCGATACTCTTGCTCTCGCTGCCGCAGAGCTTGATTCAATCGCTCTTAATCTCTCACCGGAGACTTTCTCTTTATTTATTAACTGTCTTCAGAGTACAGACTCTTCCGCAAAATCTCCGGTGAGGAAACATTGCGTTTCGCTTCTCTCTGTTCTTTCTCGTTCTCATGGCGATTCTCTCGCTCCTCACCTCTCGAAGATGGTCTCCACCGTTCTCCGCCGCCTCCGTGATCCTGATTCCTCCGTCCGTGCCGCTTGTGTTGCCGCTTCCGTTGATATGACTACCAACATCACCGGACAGCCTTTCTCCATCCTTTTCGGACCAATGATCGAAACGGTTATCCACGATTGCGATCCCAATGCGCAGATCAGCGCTGCTATGTGCCTTGCTGCGGCGGTAGACGCAGCAGATGAGCCGGATGTTGAGCAACTGCAGAAGGCCCTGCCGAAGATTGGGAAGTTGCTTAAATCGGAAGGTTTCAAGGCGAAAGCGGAACTTCTTGGAGCCATAGGAACCGTAATCGGCGCTGTTGGCGGTCGAAACAGCGAAAAGGCGGTGCTAGACTGGCTTTTACCAAACGTCTCGGAGTTTCTAAGCAGCGACGATTGGCGTGCGAGGAAAGCTGCTGCGGAGGCAATGGCTAGAGTGGCTATGGTAGAAGAAGAATTAGCTCCACTGTATAAGAAGACATGTCTAGGTATTCTTGAGAGCAGACGATTCGATAAGGTCAAACTTGTTAGAGAGACAATGAATCGTACATTGGGTTTATGGAAGCAACTTGAAGGTGATTCAACAGAGGTCTCAGAGTCTTCTTCCTCCTCCAAATCAGCTTCTTCTGGTTTGTCTGCGACTTCAGGAAAGAGAAGCAACACATTGAAAGGCAAAGATAGGAATTTAAACACACCATTAAGCTCAAAGTCGAATGATGTTGAGCCATTAGATCGTGGTGACACTCCTAAGGATGTTGAGCAGGAAGCTGTTGTGTCGAAAGAGAAGCGGAATCGTTCGACATTGGGAGCTAAACGGGTTCTGTTCCCGGCAAAGATGCATAAGGTCAAAGAGAATGGGTCGAACAAGTCACAAGTTGTTCAGAGTAGTGATGAGGAGAGTCCTAAAACTGACAGTGGTAGTAGCAGTTCTTCTCAGGCAAAGAGTAATGCAGAAGAGTTGTCTCTGATAAGACACCAGATTACACAGATCGAAAAACAGCAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCATAACGGAATGCAATCTCTAGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTTACTAGTCTCTCGCAGCATAACACAAAATGGAAACCACAAACGAAACGCCTGTCGACAGAACTGA

Protein Analysis

498

Amino Acids

54.05

Weight (kDa)

8.88

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 21 - 294 3.9e-105 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
AccI GTMKAC 2 cut(s) 504, 1486
AccII CGCG 1 cut(s) 108
AclWI GGATC 2 cut(s) 329, 452
AcsI RAATTY 1 cut(s) 997
AcuI CTGAAG 3 cut(s) 179, 942, 1396
AfaI GTAC 3 cut(s) 202, 862, 1392
AfeI AGCGCT 1 cut(s) 478
AfiI CCNNNNNNNGG 2 cut(s) 496, 557
AflIII ACRYGT 1 cut(s) 794
AgsI TTSAA 6 cut(s) 14, 144, 586, 887, 897, 982
AhlI ACTAGT 1 cut(s) 1435
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 8 cut(s) 136, 728, 776, 935, 1017, 1082, 1124, 1356
AluI AGCT 8 cut(s) 136, 728, 776, 935, 1017, 1082, 1124, 1356
Alw21I GWGCWC 1 cut(s) 1358
AlwI GGATC 2 cut(s) 329, 452
Aor51HI AGCGCT 1 cut(s) 478
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 8 cut(s) 125, 479, 494, 509, 702, 728, 731, 1446
ApoI RAATTY 1 cut(s) 997
ArsI GACNNNNNNTTYG 1 cut(s) 1468
AspLEI GCGC 3 cut(s) 469, 479, 632
AspS9I GGNCC 2 cut(s) 425, 544
AsuC2I CCSGG 1 cut(s) 1142
AsuHPI GGTGA 6 cut(s) 153, 238, 284, 388, 902, 1064
AvaII GGWCC 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 1062
BanII GRGCYC 1 cut(s) 1358
BarI GAAGNNNNNNTAC 4 cut(s) 193, 225, 1228, 1260
BbsI GAAGAC 3 cut(s) 185, 797, 906
Bbv12I GWGCWC 1 cut(s) 1358
BbvI GCAGC 8 cut(s) 112, 466, 481, 521, 714, 715, 718, 1458
BccI CCATC 2 cut(s) 298, 422
BcgI CGANNNNNNTGC 8 cut(s) 98, 132, 446, 480, 698, 732, 805, 839
BcnI CCSGG 1 cut(s) 1142
BcuI ACTAGT 1 cut(s) 1435
BfaI CTAG 6 cut(s) 665, 747, 800, 1379, 1400, 1436
BfmI CTRYAG 1 cut(s) 536
BfoI RGCGCY 2 cut(s) 480, 633
BglII AGATCT 1 cut(s) 1330
Bme1390I CCNGG 1 cut(s) 1142
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 425, 544
BmiI GGNNCC 2 cut(s) 610, 619
BmrFI CCNGG 1 cut(s) 1142
BmsI GCATC 1 cut(s) 1140
BpiI GAAGAC 3 cut(s) 185, 797, 906
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 2 cut(s) 50, 830
BpuMI CCSGG 1 cut(s) 1142
BsaAI YACGTR 1 cut(s) 1394
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 2 cut(s) 313, 910
BsaWI WCCGGW 3 cut(s) 163, 223, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 557
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 674, 1320
Bse21I CCTNAGG 1 cut(s) 1062
Bse3DI GCAATG 2 cut(s) 235, 747
Bse8I GATNNNNATC 1 cut(s) 456
BseGI GGATG 4 cut(s) 414, 529, 1072, 1406
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 496, 557
BseMI GCAATG 2 cut(s) 235, 747
BseMII CTCAG 2 cut(s) 921, 1262
BseNI ACTGG 2 cut(s) 674, 1320
BseRI GAGGAG 3 cut(s) 279, 913, 1223
BseXI GCAGC 8 cut(s) 112, 466, 481, 521, 714, 715, 718, 1458
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 1358
BsiSI CCGG 6 cut(s) 44, 164, 224, 399, 521, 1142
BslI CCNNNNNNNGG 2 cut(s) 496, 557
BsmBI CGTCTC 4 cut(s) 36, 101, 691, 1378
BsmI GAATGC 1 cut(s) 1374
BsnI GGCC 1 cut(s) 545
Bso31I GGTCTC 2 cut(s) 313, 910
Bsp1286I GDGCHC 1 cut(s) 1358
Bsp143I GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
Bsp68I TCGCGA 1 cut(s) 108
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 2 cut(s) 920, 1261
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 610, 619
BspMAI CTGCAG 1 cut(s) 540
BspPI GGATC 2 cut(s) 329, 452
BspTNI GGTCTC 2 cut(s) 313, 910
BsrDI GCAATG 2 cut(s) 235, 747
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 674, 1320
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
Bst4CI ACNGT 7 cut(s) 55, 191, 316, 442, 622, 783, 1229
Bst6I CTCTTC 2 cut(s) 214, 1263
BstBAI YACGTR 1 cut(s) 1394
BstC8I GCNNGC 3 cut(s) 45, 717, 1358
BstDEI CTNAG 4 cut(s) 698, 907, 1062, 1248
BstF5I GGATG 4 cut(s) 414, 529, 1072, 1406
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 2 cut(s) 480, 633
BstHHI GCGC 3 cut(s) 469, 479, 632
BstKTI GATC 9 cut(s) 64, 106, 337, 435, 460, 474, 1048, 1305, 1333
BstMBI GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 8 cut(s) 125, 365, 506, 636, 670, 725, 737, 752
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 1140
BstSFI CTRYAG 1 cut(s) 536
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 8 cut(s) 112, 466, 481, 521, 714, 715, 718, 1458
BstV2I GAAGAC 3 cut(s) 185, 797, 906
BstX2I RGATCY 1 cut(s) 1330
BstYI RGATCY 1 cut(s) 1330
Bsu36I CCTNAGG 1 cut(s) 1062
BsuRI GGCC 1 cut(s) 545
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 4 cut(s) 414, 529, 1072, 1406
BtsIMutI CAGTG 3 cut(s) 779, 1234, 1425
BtuMI TCGCGA 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 45, 717, 1358
CfoI GCGC 3 cut(s) 469, 479, 632
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 425, 544
CseI GACGC 1 cut(s) 515
Csp6I GTAC 3 cut(s) 201, 861, 1391
CviAII CATG 3 cut(s) 272, 795, 1348
CviQI GTAC 3 cut(s) 201, 861, 1391
DdeI CTNAG 4 cut(s) 698, 907, 1062, 1248
DpnI GATC 9 cut(s) 63, 105, 336, 434, 459, 473, 1047, 1304, 1332
DpnII GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
DraI TTTAAA 1 cut(s) 1002
Eam1104I CTCTTC 2 cut(s) 214, 1263
EarI CTCTTC 2 cut(s) 214, 1263
EciI GGCGGA 1 cut(s) 311
Ecl136II GAGCTC 1 cut(s) 1356
Eco24I GRGCYC 1 cut(s) 1358
Eco31I GGTCTC 2 cut(s) 313, 910
Eco47I GGWCC 1 cut(s) 425
Eco47III AGCGCT 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 1356
Eco57I CTGAAG 3 cut(s) 179, 942, 1396
Eco81I CCTNAGG 1 cut(s) 1062
EcoICRI GAGCTC 1 cut(s) 1356
EcoO109I RGGNCCY 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 1155
EcoT38I GRGCYC 1 cut(s) 1358
Esp3I CGTCTC 4 cut(s) 36, 101, 691, 1378
FaeI CATG 3 cut(s) 275, 798, 1351
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 3 cut(s) 271, 794, 1347
FblI GTMKAC 2 cut(s) 504, 1486
FokI GGATG 4 cut(s) 401, 536, 1079, 1393
FriOI GRGCYC 1 cut(s) 1358
FspBI CTAG 6 cut(s) 665, 747, 800, 1379, 1400, 1436
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 3 cut(s) 468, 478, 631
HaeII RGCGCY 2 cut(s) 480, 633
HaeIII GGCC 1 cut(s) 545
HapII CCGG 6 cut(s) 44, 164, 224, 399, 521, 1142
HgaI GACGC 1 cut(s) 515
HhaI GCGC 3 cut(s) 469, 479, 632
Hin1II CATG 3 cut(s) 275, 798, 1351
Hin6I GCGC 3 cut(s) 467, 477, 630
HinP1I GCGC 3 cut(s) 467, 477, 630
HincII GTYRAC 1 cut(s) 1487
HindII GTYRAC 1 cut(s) 1487
HpaII CCGG 6 cut(s) 44, 164, 224, 399, 521, 1142
HphI GGTGA 6 cut(s) 153, 238, 284, 388, 902, 1064
Hpy166II GTNNAC 2 cut(s) 505, 1487
Hpy188I TCNGA 9 cut(s) 103, 198, 425, 577, 691, 910, 1197, 1281, 1341
Hpy188III TCNNGA 7 cut(s) 107, 298, 338, 809, 960, 1379, 1400
Hpy8I GTNNAC 2 cut(s) 505, 1487
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 5 cut(s) 15, 535, 572, 881, 1420
HpyCH4III ACNGT 7 cut(s) 55, 191, 316, 442, 622, 783, 1229
HpyCH4IV ACGT 2 cut(s) 684, 1393
HpyCH4V TGCA 4 cut(s) 538, 1153, 1265, 1372
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 365, 506, 636, 670, 725, 737, 752
HpyF3I CTNAG 4 cut(s) 698, 907, 1062, 1248
HpySE526I ACGT 2 cut(s) 684, 1393
Hsp92II CATG 3 cut(s) 275, 798, 1351
HspAI GCGC 3 cut(s) 467, 477, 630
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
LmnI GCTCC 4 cut(s) 292, 608, 781, 1121
Lsp1109I GCAGC 8 cut(s) 112, 466, 481, 521, 714, 715, 718, 1458
LweI GCATC 1 cut(s) 1140
MaeI CTAG 6 cut(s) 665, 747, 800, 1379, 1400, 1436
MaeII ACGT 2 cut(s) 684, 1393
MaeIII GTNAC 3 cut(s) 55, 1052, 1182
MalI GATC 9 cut(s) 63, 105, 336, 434, 459, 473, 1047, 1304, 1332
MboI GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
MflI RGATCY 1 cut(s) 1330
MhlI GDGCHC 1 cut(s) 1358
MluCI AATT 2 cut(s) 770, 997
MlyI GAGTC 4 cut(s) 84, 200, 920, 1222
Mph1103I ATGCAT 1 cut(s) 1155
MroNI GCCGGC 1 cut(s) 43
MseI TTAA 5 cut(s) 153, 186, 570, 1001, 1013
MspI CCGG 6 cut(s) 44, 164, 224, 399, 521, 1142
MspR9I CCNGG 1 cut(s) 1142
Mva1269I GAATGC 1 cut(s) 1374
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 8 cut(s) 125, 365, 506, 636, 670, 725, 737, 752
NaeI GCCGGC 1 cut(s) 45
NciI CCSGG 1 cut(s) 1142
NdeII GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 275, 798, 1351
NlaIV GGNNCC 2 cut(s) 610, 619
NmuCI GTSAC 2 cut(s) 1052, 1182
NruI TCGCGA 1 cut(s) 108
NsbI TGCGCA 1 cut(s) 468
NsiI ATGCAT 1 cut(s) 1155
NspI RCATGY 1 cut(s) 798
PciI ACATGT 1 cut(s) 794
PctI GAATGC 1 cut(s) 1374
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 7 cut(s) 140, 278, 341, 822, 856, 893, 1105
PleI GAGTC 4 cut(s) 83, 200, 919, 1221
PpsI GAGTC 4 cut(s) 83, 200, 919, 1221
Ppu21I YACGTR 1 cut(s) 1394
PscI ACATGT 1 cut(s) 794
Psp124BI GAGCTC 1 cut(s) 1358
PspN4I GGNNCC 2 cut(s) 610, 619
PspPI GGNCC 2 cut(s) 425, 544
PsrI GAACNNNNNNTAC 2 cut(s) 1225, 1257
PstI CTGCAG 1 cut(s) 540
PsuI RGATCY 1 cut(s) 1330
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 3 cut(s) 202, 862, 1392
RsaNI GTAC 3 cut(s) 201, 861, 1391
SacI GAGCTC 1 cut(s) 1358
SalI GTCGAC 1 cut(s) 1485
SaqAI TTAA 5 cut(s) 153, 186, 570, 1001, 1013
Sau3AI GATC 9 cut(s) 61, 103, 334, 432, 457, 471, 1045, 1302, 1330
Sau96I GGNCC 2 cut(s) 425, 544
SchI GAGTC 4 cut(s) 84, 200, 920, 1222
ScrFI CCNGG 1 cut(s) 1142
SduI GDGCHC 1 cut(s) 1358
SfaNI GCATC 1 cut(s) 1140
SfcI CTRYAG 1 cut(s) 536
SinI GGWCC 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 65, 809
SmoI CTYRAG 2 cut(s) 65, 809
SpeI ACTAGT 1 cut(s) 1435
Sse9I AATT 2 cut(s) 770, 997
SspMI CTAG 6 cut(s) 665, 747, 800, 1379, 1400, 1436
SstI GAGCTC 1 cut(s) 1358
StyD4I CCNGG 1 cut(s) 1140
TaaI ACNGT 7 cut(s) 55, 191, 316, 442, 622, 783, 1229
TaiI ACGT 2 cut(s) 687, 1396
TasI AATT 2 cut(s) 770, 997
TatI WGTACW 1 cut(s) 200
TauI GCSGC 5 cut(s) 131, 327, 359, 371, 500
TfiI GAWTC 7 cut(s) 140, 278, 341, 822, 856, 893, 1105
Tru1I TTAA 5 cut(s) 153, 186, 570, 1001, 1013
Tru9I TTAA 5 cut(s) 153, 186, 570, 1001, 1013
TscAI CASTG 3 cut(s) 786, 1234, 1432
TseFI GTSAC 2 cut(s) 1052, 1182
TseI GCWGC 8 cut(s) 125, 479, 494, 509, 702, 728, 731, 1446
Tsp45I GTSAC 2 cut(s) 1052, 1182
TspDTI ATGAA 2 cut(s) 869, 1336
TspGWI ACGGA 7 cut(s) 8, 18, 320, 337, 341, 364, 1380
TspRI CASTG 3 cut(s) 786, 1234, 1432
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 997
XbaI TCTAGA 2 cut(s) 1378, 1399
XceI RCATGY 1 cut(s) 798
XmiI GTMKAC 2 cut(s) 504, 1486
XspI CTAG 6 cut(s) 665, 747, 800, 1379, 1400, 1436
Zsp2I ATGCAT 1 cut(s) 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.