Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026285.1

Orthogroup ID

OG0007666

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1060

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 928 bp

atgtctggctctaggcgattctcgctaggcagcccgccacagccgggcgggtcggatctgaagcagcgggtcataacctgcctcaacaagctctctgaccgtgacactctggccatggccattaacgagctggagtgcatagctagaaatctcacacaagagtcgtttgctacgtttttgatctgcattcacaacaccgacgcgtcgtcgaagccgccggtgaggaagcaatgcgtgtcgctgctgacgataatgtccaattcacacggcgacgcgctggcgccgtttctgtcgaaaatgatctccaccgtcctccgccgcctccgcgaccccgactccgccgtccgattggcctgcgtggacgccgtcgccgccatgtcgtccaagatcactacgccggagttcgcctcgtcgtttctgaagccgctgatggacacgctggcggtggagcaggactccaactcgcagatcggctcggcgctctgcctcgccgccgcgatcgacgccgcgccggaggtggagatggctcagctgaggaggagcctggcgcggctcgggaagctggccaagagcgacggcttcaaggccaaggcggcgctgatggtgctcatagggagcattgtcggcgccggcggcgcgtcgagcaaaggcgcgttggattggctcgtgccgtgcgtggtggagtttctgagcagcgacgactgggcggtcagaaagggcgcggctgaggccctcggaaaagtagccacggcggagacagagttggcgccactctataaagcttgttgcttgaatgctttggaaagccggagatttgataaggtgaaggtagtccgggagactatgaacaatgcactggagatgtggaaggttttcgcaggcgattccgaggaggtttctgctccaattcaatccagatcttcaatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_HEAT HEAT

Protein Analysis

309

Amino Acids

33.0

Weight (kDa)

8.35

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27210 AT1G59850
fragaria_vesca	FvH4_4g35310 FvH4_4g35310 FvH4_4g35310
malus_domestica	MD13G1084500.v1.1 MD16G1083600.v1.1
prunus_persica	Prupe.1G262400_v2.0.a1
pyrus_communis	pycom13g07290 pycom16g07250
rosa_chinensis	RchiOBHm_Chr4g0444931
rosa_laevigata	RLG00000005786
rosa_multiflora	Rmu_co8293673.1_g000001 Rmu_sc0010689.1_g000001 Rmu_sc0011561.1_g000001 Rmu_sc0026285.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385420
rosa_rugosa	Rorug04G0356500 Rorug04G0356500
rosa_samantha	Rh4AG418000 Rh4BG429700 Rh4CG444500 Rh4DG425700
rosa_wichuraiana	Rw4G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	253, 341, 707
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	3 cut(s)	280, 626, 766
AccII	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	3 cut(s)	111, 117, 564
AcuI	CTGAAG	2 cut(s)	80, 440
AcyI	GRCGYC	5 cut(s)	281, 363, 504, 627, 767
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	583, 793, 911, 924
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	6 cut(s)	91, 130, 143, 532, 562, 782
AluI	AGCT	6 cut(s)	91, 130, 143, 532, 562, 782
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	749, 833
AlwI	GGATC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	6 cut(s)	111, 117, 351, 564, 585, 729
ApeKI	GCWGC	4 cut(s)	30, 64, 241, 693
Asp700I	GAANNNNTTC	1 cut(s)	872
AspS9I	GGNCC	1 cut(s)	730
AsuC2I	CCSGG	2 cut(s)	45, 836
AsuHPI	GGTGA	2 cut(s)	232, 835
AvaI	CYCGRG	1 cut(s)	554
BalI	TGGCCA	3 cut(s)	113, 119, 566
BanI	GGYRCC	3 cut(s)	280, 626, 766
BauI	CACGAG	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	609
BbvCI	CCTCAGC	2 cut(s)	533, 726
BbvI	GCAGC	4 cut(s)	42, 76, 228, 705
BccI	CCATC	3 cut(s)	424, 517, 595
BceAI	ACGGC	7 cut(s)	268, 283, 326, 350, 592, 655, 765
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	1 cut(s)	545
BcnI	CCSGG	2 cut(s)	45, 836
BcoDI	GTCTC	2 cut(s)	749, 833
BfaI	CTAG	3 cut(s)	12, 26, 144
BfoI	RGCGCY	5 cut(s)	284, 482, 599, 630, 770
BfuAI	ACCTGC	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	917
BlpI	GCTNAGC	1 cut(s)	528
Bme1390I	CCNGG	3 cut(s)	45, 545, 836
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	4 cut(s)	282, 542, 628, 768
BmrFI	CCNGG	3 cut(s)	45, 545, 836
BmrI	ACTGGG	1 cut(s)	712
BmuI	ACTGGG	1 cut(s)	712
BplI	GAGNNNNNCTC	4 cut(s)	392, 424, 440, 472
BpmI	CTGGAG	2 cut(s)	152, 878
Bpu10I	CCTNAGC	2 cut(s)	533, 726
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	45, 836
BsaHI	GRCGYC	5 cut(s)	281, 363, 504, 627, 767
BsaJI	CCNNGG	5 cut(s)	114, 588, 733, 747, 888
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 746, 776
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	2 cut(s)	217, 629
Bse1I	ACTGG	2 cut(s)	707, 861
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	5 cut(s)	114, 588, 733, 747, 888
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	4 cut(s)	524, 542, 680, 717
BseNI	ACTGG	2 cut(s)	707, 861
BseRI	GAGGAG	3 cut(s)	550, 553, 905
BseXI	GCAGC	4 cut(s)	42, 76, 228, 705
Bsh1236I	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BshNI	GGYRCC	3 cut(s)	280, 626, 766
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	7 cut(s)	44, 218, 398, 512, 630, 808, 835
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	749, 833
BsmI	GAATGC	2 cut(s)	186, 799
BsnI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
Bsp1720I	GCTNAGC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BspCNI	CTCAG	4 cut(s)	525, 541, 681, 718
BspFNI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
BspLI	GGNNCC	4 cut(s)	282, 542, 628, 768
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	63
BspT107I	GGYRCC	3 cut(s)	280, 626, 766
BsrDI	GCAATG	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	217, 629
BsrI	ACTGG	2 cut(s)	707, 861
BssAI	RCCGGY	2 cut(s)	217, 629
BssECI	CCNNGG	5 cut(s)	114, 588, 733, 747, 888
BssMI	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
BssNI	GRCGYC	5 cut(s)	281, 363, 504, 627, 767
BssSI	CACGAG	1 cut(s)	665
BssT1I	CCWWGG	2 cut(s)	114, 588
Bst2BI	CACGAG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	2 cut(s)	101, 310
BstACI	GRCGYC	5 cut(s)	281, 363, 504, 627, 767
BstC8I	GCNNGC	7 cut(s)	35, 279, 355, 441, 564, 631, 880
BstDEI	CTNAG	4 cut(s)	528, 533, 689, 726
BstDSI	CCRYGG	2 cut(s)	114, 747
BstFNI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
BstH2I	RGCGCY	5 cut(s)	284, 482, 599, 630, 770
BstKTI	GATC	7 cut(s)	58, 183, 303, 390, 471, 501, 920
BstMAI	GTCTC	2 cut(s)	749, 833
BstMBI	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
BstMCI	CGRYCG	1 cut(s)	501
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	3 cut(s)	43, 543, 834
BstUI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
BstV1I	GCAGC	4 cut(s)	42, 76, 228, 705
BstX2I	RGATCY	2 cut(s)	55, 917
BstYI	RGATCY	2 cut(s)	55, 917
BsuRI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BtgI	CCRYGG	2 cut(s)	114, 747
BtsIMutI	CAGTG	1 cut(s)	854
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	7 cut(s)	35, 279, 355, 441, 564, 631, 880
Cfr10I	RCCGGY	2 cut(s)	217, 629
Cfr13I	GGNCC	1 cut(s)	730
CseI	GACGC	6 cut(s)	192, 209, 281, 371, 512, 627
CviAII	CATG	2 cut(s)	115, 376
DdeI	CTNAG	4 cut(s)	528, 533, 689, 726
DinI	GGCGCC	3 cut(s)	282, 628, 768
DpnI	GATC	7 cut(s)	57, 182, 302, 389, 470, 500, 919
DpnII	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
DrdI	GACNNNNNNGTC	3 cut(s)	253, 341, 707
DriI	GACNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	3 cut(s)	253, 341, 707
EaeI	YGGCCR	3 cut(s)	111, 117, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EciI	GGCGGA	3 cut(s)	305, 328, 767
Eco130I	CCWWGG	2 cut(s)	114, 588
Eco57I	CTGAAG	2 cut(s)	80, 440
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	2 cut(s)	114, 588
EgeI	GGCGCC	3 cut(s)	282, 628, 768
EheI	GGCGCC	3 cut(s)	282, 628, 768
ErhI	CCWWGG	2 cut(s)	114, 588
FaeI	CATG	2 cut(s)	118, 379
FaiI	YATR	7 cut(s)	74, 116, 140, 377, 611, 777, 845
FatI	CATG	2 cut(s)	114, 375
FauI	CCCGC	3 cut(s)	41, 42, 60
FspBI	CTAG	3 cut(s)	12, 26, 144
GsuI	CTGGAG	2 cut(s)	152, 878
HaeII	RGCGCY	5 cut(s)	284, 482, 599, 630, 770
HaeIII	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
HapII	CCGG	7 cut(s)	44, 218, 398, 512, 630, 808, 835
HgaI	GACGC	6 cut(s)	192, 209, 281, 371, 512, 627
Hin1I	GRCGYC	5 cut(s)	281, 363, 504, 627, 767
Hin1II	CATG	2 cut(s)	118, 379
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	5 cut(s)	18, 161, 335, 455, 884
HpaII	CCGG	7 cut(s)	44, 218, 398, 512, 630, 808, 835
HphI	GGTGA	2 cut(s)	232, 835
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	9 cut(s)	55, 60, 97, 347, 420, 690, 713, 737, 889
Hpy188III	TCNNGA	2 cut(s)	556, 915
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	820, 862
HpyCH4III	ACNGT	2 cut(s)	101, 310
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	138, 186, 854
HpyF3I	CTNAG	4 cut(s)	528, 533, 689, 726
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	5 cut(s)	281, 363, 504, 627, 767
Hsp92II	CATG	2 cut(s)	118, 379
KasI	GGCGCC	3 cut(s)	280, 626, 766
KroI	GCCGGC	1 cut(s)	629
KroNI	GCCGGC	1 cut(s)	631
Kzo9I	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
LmnI	GCTCC	4 cut(s)	448, 540, 615, 907
Lsp1109I	GCAGC	4 cut(s)	42, 76, 228, 705
MaeI	CTAG	3 cut(s)	12, 26, 144
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	7 cut(s)	57, 182, 302, 389, 470, 500, 919
MboI	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
MboII	GAAGA	1 cut(s)	912
MflI	RGATCY	2 cut(s)	55, 917
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	3 cut(s)	113, 119, 566
MluCI	AATT	2 cut(s)	259, 906
MluI	ACGCGT	1 cut(s)	201
MluNI	TGGCCA	3 cut(s)	113, 119, 566
Mly113I	GGCGCC	3 cut(s)	281, 627, 767
MlyI	GAGTC	3 cut(s)	170, 329, 449
MmeI	TCCRAC	3 cut(s)	33, 483, 636
Mox20I	TGGCCA	3 cut(s)	113, 119, 566
MreI	CGCCGGCG	1 cut(s)	629
MroNI	GCCGGC	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	872
MscI	TGGCCA	3 cut(s)	113, 119, 566
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	3 cut(s)	113, 119, 566
MspA1I	CMGCKG	3 cut(s)	67, 427, 532
MspI	CCGG	7 cut(s)	44, 218, 398, 512, 630, 808, 835
MspR9I	CCNGG	3 cut(s)	45, 545, 836
Mva1269I	GAATGC	2 cut(s)	186, 799
MvaI	CCWGG	1 cut(s)	545
MvnI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
NaeI	GCCGGC	1 cut(s)	631
NarI	GGCGCC	3 cut(s)	281, 627, 767
NciI	CCSGG	2 cut(s)	45, 836
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
NgoMIV	GCCGGC	1 cut(s)	629
NlaIII	CATG	2 cut(s)	118, 379
NlaIV	GGNNCC	4 cut(s)	282, 542, 628, 768
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	3 cut(s)	170, 245, 672
PctI	GAATGC	2 cut(s)	186, 799
PdiI	GCCGGC	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	872
PfeI	GAWTC	2 cut(s)	18, 884
PflFI	GACNNNGTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	834
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	3 cut(s)	169, 329, 449
PluTI	GGCGCC	3 cut(s)	284, 630, 770
PpsI	GAGTC	3 cut(s)	169, 329, 449
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	4 cut(s)	282, 542, 628, 768
PspPI	GGNCC	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	55, 917
PsyI	GACNNNGTC	1 cut(s)	365
PvuI	CGATCG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	7 cut(s)	55, 180, 300, 387, 468, 498, 917
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	3 cut(s)	170, 329, 449
ScrFI	CCNGG	3 cut(s)	45, 545, 836
SduI	GDGCHC	1 cut(s)	609
SfoI	GGCGCC	3 cut(s)	282, 628, 768
SgrAI	CRCCGGYG	2 cut(s)	217, 629
Sse9I	AATT	2 cut(s)	259, 906
SspDI	GGCGCC	3 cut(s)	280, 626, 766
SspMI	CTAG	3 cut(s)	12, 26, 144
StyD4I	CCNGG	3 cut(s)	43, 543, 834
StyI	CCWWGG	2 cut(s)	114, 588
TaaI	ACNGT	2 cut(s)	101, 310
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	4 cut(s)	209, 293, 501, 641
TasI	AATT	2 cut(s)	259, 906
TfiI	GAWTC	2 cut(s)	18, 884
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	861
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	30, 64, 241, 693
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	860
TspRI	CASTG	1 cut(s)	861
Tth111I	GACNNNGTC	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	872
XspI	CTAG	3 cut(s)	12, 26, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.