Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010689.1

Orthogroup ID

OG0007666

Physical Location & Seq

Genomic Coordinates Forward (+)

111 .. 1842

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgccaaactctgcctcttcgaaggtgtctcatgcagatgatattgttgcgagtgattttggagatggggaatcaggaaagaatgagcacaatgcaaatagcatggcagaagataaacgtgtactcttcagtaggaaccgtgatgaaaaagcatacaaatttggtggtttgagatctcggtctcgagtagttccatttgatgatgagaactatgactcggatgctgtggtttgtaatcctgcagaagaagtttacgagagccccaaggaggctgaggatctgaatttgatccgtgcgcaactcattcagattgaaaaccagcaagccaacctatttgacctcctccagagattcattggaaattctcagagtgggctgaattctcttgagacacgggtacatggccttgagatggcgctggatgaaatatcgtatgatttggcactatcaactggaaggattccaaacactgaatctgcagaaaacacatgttgcaagctgcctggtgctgagttcttgagttccaagttctggcgcagaacagaagggcggtgttctactccaaggttcccctcttatgctggaacccatccctcaatgaatgctgggcctgataaagatgctgttgctgaaccgtctacatttaaccgccaaagatttcagcaacaaagtaggggtgcatatacagtaatcccgacaacagaaattcatggcaactcgagggtacatacagggcactttccagacagaacaccaaagagcatactccaaggtgctgagagggtccaagtttacaatgctagccagtttgatggggtccctccaactaattgtatagcatcaaggaacctaagcagaaggccatctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_HEAT HEAT

Protein Analysis

290

Amino Acids

32.13

Weight (kDa)

5.71

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27210 AT1G59850
fragaria_vesca	FvH4_4g35310 FvH4_4g35310 FvH4_4g35310
malus_domestica	MD13G1084500.v1.1 MD16G1083600.v1.1
prunus_persica	Prupe.1G262400_v2.0.a1
pyrus_communis	pycom13g07290 pycom16g07250
rosa_chinensis	RchiOBHm_Chr4g0444931
rosa_laevigata	RLG00000005786
rosa_multiflora	Rmu_co8293673.1_g000001 Rmu_sc0010689.1_g000001 Rmu_sc0011561.1_g000001 Rmu_sc0026285.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385420
rosa_rugosa	Rorug04G0356500 Rorug04G0356500
rosa_samantha	Rh4AG418000 Rh4BG429700 Rh4CG444500 Rh4DG425700
rosa_wichuraiana	Rw4G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	638
AciI	CCGC	2 cut(s)	550, 649
AclWI	GGATC	2 cut(s)	283, 285
AcsI	RAATTY	5 cut(s)	158, 283, 361, 379, 705
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	3 cut(s)	123, 399, 726
AfiI	CCNNNNNNNGG	3 cut(s)	268, 412, 531
AflIII	ACRYGT	2 cut(s)	118, 488
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	1 cut(s)	499
AluI	AGCT	1 cut(s)	499
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	33, 186, 383
AlwI	GGATC	2 cut(s)	283, 285
Ama87I	CYCGRG	2 cut(s)	183, 718
AoxI	GGCC	3 cut(s)	403, 608, 860
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	5 cut(s)	158, 283, 361, 379, 705
AspLEI	GCGC	3 cut(s)	298, 418, 537
AspS9I	GGNCC	3 cut(s)	608, 784, 817
AsuII	TTCGAA	1 cut(s)	20
AsuNHI	GCTAGC	1 cut(s)	800
AvaI	CYCGRG	2 cut(s)	183, 718
AvaII	GGWCC	2 cut(s)	784, 817
BaeGI	GKGCMC	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	5 cut(s)	59, 406, 597, 806, 871
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	33, 186, 383
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	2 cut(s)	240, 477
BfoI	RGCGCY	1 cut(s)	419
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	2 cut(s)	784, 817
BmeT110I	CYCGRG	2 cut(s)	183, 718
BmgT120I	GGNCC	3 cut(s)	608, 784, 817
BmiI	GGNNCC	7 cut(s)	137, 569, 586, 785, 818, 819, 848
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	211, 610, 848
BmtI	GCTAGC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	329
Bpu10I	CCTNAGC	2 cut(s)	273, 851
Bpu14I	TTCGAA	1 cut(s)	20
BpuEI	CTTGAG	3 cut(s)	407, 428, 538
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	264, 563, 769
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 412, 531
Bse1I	ACTGG	2 cut(s)	457, 805
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	264, 563, 769
BseGI	GGATG	3 cut(s)	226, 427, 589
BseLI	CCNNNNNNNGG	3 cut(s)	268, 412, 531
BseMII	CTCAG	4 cut(s)	264, 380, 501, 768
BseNI	ACTGG	2 cut(s)	457, 805
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	1 cut(s)	486
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	3 cut(s)	405, 610, 862
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	183, 718
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	3 cut(s)	268, 412, 531
BsmAI	GTCTC	3 cut(s)	33, 186, 383
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	405, 610, 862
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	2 cut(s)	183, 718
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	3 cut(s)	90, 263, 738
Bsp143I	GATC	3 cut(s)	173, 277, 288
BspACI	CCGC	2 cut(s)	550, 649
BspANI	GGCC	3 cut(s)	405, 610, 862
BspCNI	CTCAG	4 cut(s)	265, 379, 502, 769
BspLI	GGNNCC	7 cut(s)	137, 569, 586, 785, 818, 819, 848
BspMAI	CTGCAG	2 cut(s)	244, 481
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	2 cut(s)	283, 285
BspT104I	TTCGAA	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	457, 805
BssECI	CCNNGG	3 cut(s)	264, 563, 769
BssMI	GATC	3 cut(s)	173, 277, 288
BssT1I	CCWWGG	3 cut(s)	264, 563, 769
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	140, 636, 688
Bst6I	CTCTTC	2 cut(s)	22, 131
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	324, 497, 802
BstDEI	CTNAG	6 cut(s)	273, 366, 510, 777, 851, 870
BstF5I	GGATG	3 cut(s)	226, 427, 589
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	3 cut(s)	298, 418, 537
BstKTI	GATC	3 cut(s)	176, 280, 291
BstMAI	GTCTC	3 cut(s)	33, 186, 383
BstMBI	GATC	3 cut(s)	173, 277, 288
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	2 cut(s)	240, 477
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	173, 277
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	2 cut(s)	173, 277
BsuRI	GGCC	3 cut(s)	405, 610, 862
BtsCI	GGATG	3 cut(s)	226, 427, 589
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	324, 497, 802
CfoI	GCGC	3 cut(s)	298, 418, 537
Cfr13I	GGNCC	3 cut(s)	608, 784, 817
Csp6I	GTAC	3 cut(s)	122, 398, 725
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	5 cut(s)	32, 103, 401, 489, 710
CviJI	RGCY	9 cut(s)	261, 272, 326, 376, 405, 499, 610, 804, 862
CviKI_1	RGCY	9 cut(s)	261, 272, 326, 376, 405, 499, 610, 804, 862
CviQI	GTAC	3 cut(s)	122, 398, 725
DdeI	CTNAG	6 cut(s)	273, 366, 510, 777, 851, 870
DpnI	GATC	3 cut(s)	175, 279, 290
DpnII	GATC	3 cut(s)	173, 277, 288
Eam1104I	CTCTTC	2 cut(s)	22, 131
EarI	CTCTTC	2 cut(s)	22, 131
Eco130I	CCWWGG	3 cut(s)	264, 563, 769
Eco24I	GRGCYC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	784, 817
Eco57I	CTGAAG	1 cut(s)	112
Eco88I	CYCGRG	2 cut(s)	183, 718
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	3 cut(s)	264, 563, 769
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	3 cut(s)	264, 563, 769
FaeI	CATG	5 cut(s)	35, 106, 404, 492, 713
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	5 cut(s)	31, 102, 400, 488, 709
FblI	GTMKAC	1 cut(s)	638
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	3 cut(s)	233, 434, 576
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	1 cut(s)	801
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	3 cut(s)	297, 417, 536
GluI	GCNGC	1 cut(s)	500
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	405, 610, 862
HhaI	GCGC	3 cut(s)	298, 418, 537
Hin1II	CATG	5 cut(s)	35, 106, 404, 492, 713
Hin6I	GCGC	3 cut(s)	296, 416, 535
HinP1I	GCGC	3 cut(s)	296, 416, 535
HinfI	GANTC	5 cut(s)	71, 215, 351, 460, 473
Hpy166II	GTNNAC	4 cut(s)	122, 253, 639, 793
Hpy188I	TCNGA	4 cut(s)	220, 282, 309, 369
Hpy188III	TCNNGA	7 cut(s)	75, 183, 346, 386, 517, 694, 743
Hpy8I	GTNNAC	4 cut(s)	122, 253, 639, 793
HpyAV	CCTTC	4 cut(s)	16, 450, 539, 852
HpyCH4III	ACNGT	3 cut(s)	140, 636, 688
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	6 cut(s)	35, 95, 242, 479, 495, 680
HpyF3I	CTNAG	6 cut(s)	273, 366, 510, 777, 851, 870
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	5 cut(s)	35, 106, 404, 492, 713
HspAI	GCGC	3 cut(s)	296, 416, 535
KflI	GGGWCCC	1 cut(s)	817
Kzo9I	GATC	3 cut(s)	173, 277, 288
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	3 cut(s)	211, 610, 848
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	1 cut(s)	118
MalI	GATC	3 cut(s)	175, 279, 290
MboI	GATC	3 cut(s)	173, 277, 288
MboII	GAAGA	4 cut(s)	9, 118, 122, 257
MflI	RGATCY	2 cut(s)	173, 277
MhlI	GDGCHC	3 cut(s)	90, 263, 738
MluCI	AATT	6 cut(s)	158, 283, 361, 379, 705, 829
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	848
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	173, 277, 288
NheI	GCTAGC	1 cut(s)	800
NlaIII	CATG	5 cut(s)	35, 106, 404, 492, 713
NlaIV	GGNNCC	7 cut(s)	137, 569, 586, 785, 818, 819, 848
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	20
PaeR7I	CTCGAG	2 cut(s)	183, 718
PciI	ACATGT	1 cut(s)	488
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	4 cut(s)	71, 351, 460, 473
PflMI	CCANNNNNTGG	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	817
PscI	ACATGT	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	7 cut(s)	137, 569, 586, 785, 818, 819, 848
PspPI	GGNCC	3 cut(s)	608, 784, 817
PspPPI	RGGWCCY	1 cut(s)	817
PspXI	VCTCGAGB	1 cut(s)	718
PstI	CTGCAG	2 cut(s)	244, 481
PsuI	RGATCY	2 cut(s)	173, 277
RsaI	GTAC	3 cut(s)	123, 399, 726
RsaNI	GTAC	3 cut(s)	122, 398, 725
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	3 cut(s)	173, 277, 288
Sau96I	GGNCC	3 cut(s)	608, 784, 817
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	3 cut(s)	90, 263, 738
SetI	ASST	8 cut(s)	27, 121, 333, 342, 501, 569, 775, 852
SfaNI	GCATC	3 cut(s)	211, 610, 848
SfcI	CTRYAG	2 cut(s)	240, 477
Sfr274I	CTCGAG	2 cut(s)	183, 718
SfuI	TTCGAA	1 cut(s)	20
SinI	GGWCC	2 cut(s)	784, 817
SlaI	CTCGAG	2 cut(s)	183, 718
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	5 cut(s)	183, 386, 407, 517, 718
SmoI	CTYRAG	5 cut(s)	183, 386, 407, 517, 718
Sse9I	AATT	6 cut(s)	158, 283, 361, 379, 705, 829
SsiI	CCGC	2 cut(s)	550, 649
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	3 cut(s)	264, 563, 769
TaaI	ACNGT	3 cut(s)	140, 636, 688
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	20, 184, 719
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	6 cut(s)	158, 283, 361, 379, 705, 829
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	71, 351, 460, 473
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	1 cut(s)	499
TspDTI	ATGAA	5 cut(s)	159, 343, 438, 614, 698
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	784, 817
XapI	RAATTY	5 cut(s)	158, 283, 361, 379, 705
XceI	RCATGY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XhoI	CTCGAG	2 cut(s)	183, 718
XmiI	GTMKAC	1 cut(s)	638
XspI	CTAG	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.