Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293673.1

Orthogroup ID

OG0007666

Physical Location & Seq

Genomic Coordinates Forward (+)

29 .. 874

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293673.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgtctggctctaggcgattctcgctaggcagcccgccacagccgggcgggtcggatctgaagcagcgggtcataacctgcctcaacaagctctctgaccgtgacactctggccatggccattaacgagctggagtgcatagctagaaatctcacacaagagtcgtttgctacgtttttgatctgcattcacaacaccgacgcgtcgtcgaagccgccggtgaggaagcaatgcgtgtcgctgctgacgataatgtccaattcacacggcgacgcgctggcgccgtttctgtcgaaaatgatctccaccgtcctccgccgcctccgcgaccccgactccgccgtccgattggcctgcgtggacgccgtcgccgccatgtcgtccaagatcacgacgccggagttcgcctcgtcgtttctgaagccgctgatggacacgctggcggtggagcaggactccaactcgcagatcggctcggcgctctgcctcgccgccgcgatcgacgccgcgccggaggtggagatggctcagctgaggaggagcctggcgcggctcgggaagctggccaagagcgacggcttcaaggccaaggcggcgctgatggtgctcatagggagcattgtcggcgccggcggcgcgtcgagcaaaggcgcgttggattggctcgtgccgtgcgttgtggagtttctgagcagcgacgactgggcggtcagaaagggcgcggctgaggccctcggaaaagtagccacggcggagacagagttggcgccactctataaagcttgttgcttgaatgctttggaaagccggagatttgataaggtattgccttctcaatcatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_HEAT HEAT

Protein Analysis

281

Amino Acids

29.88

Weight (kDa)

8.56

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27210 AT1G59850
fragaria_vesca	FvH4_4g35310 FvH4_4g35310 FvH4_4g35310
malus_domestica	MD13G1084500.v1.1 MD16G1083600.v1.1
prunus_persica	Prupe.1G262400_v2.0.a1
pyrus_communis	pycom13g07290 pycom16g07250
rosa_chinensis	RchiOBHm_Chr4g0444931
rosa_laevigata	RLG00000005786
rosa_multiflora	Rmu_co8293673.1_g000001 Rmu_sc0010689.1_g000001 Rmu_sc0011561.1_g000001 Rmu_sc0026285.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385420
rosa_rugosa	Rorug04G0356500 Rorug04G0356500
rosa_samantha	Rh4AG418000 Rh4BG429700 Rh4CG444500 Rh4DG425700
rosa_wichuraiana	Rw4G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	253, 341, 707
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	3 cut(s)	280, 626, 766
AccII	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	3 cut(s)	111, 117, 564
AcuI	CTGAAG	2 cut(s)	80, 440
AcyI	GRCGYC	6 cut(s)	281, 363, 395, 504, 627, 767
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	583, 793
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	6 cut(s)	91, 130, 143, 532, 562, 782
AluI	AGCT	6 cut(s)	91, 130, 143, 532, 562, 782
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	6 cut(s)	111, 117, 351, 564, 585, 729
ApeKI	GCWGC	4 cut(s)	30, 64, 241, 693
AspS9I	GGNCC	1 cut(s)	730
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	554
BalI	TGGCCA	3 cut(s)	113, 119, 566
BanI	GGYRCC	3 cut(s)	280, 626, 766
BauI	CACGAG	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	609
BbvCI	CCTCAGC	2 cut(s)	533, 726
BbvI	GCAGC	4 cut(s)	42, 76, 228, 705
BccI	CCATC	3 cut(s)	424, 517, 595
BceAI	ACGGC	7 cut(s)	268, 283, 326, 350, 592, 655, 765
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	3 cut(s)	12, 26, 144
BfoI	RGCGCY	5 cut(s)	284, 482, 599, 630, 770
BfuAI	ACCTGC	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	593
BlpI	GCTNAGC	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	45, 545
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	4 cut(s)	282, 542, 628, 768
BmrFI	CCNGG	2 cut(s)	45, 545
BmrI	ACTGGG	1 cut(s)	712
BmuI	ACTGGG	1 cut(s)	712
BplI	GAGNNNNNCTC	4 cut(s)	392, 424, 440, 472
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	2 cut(s)	533, 726
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	45
BsaHI	GRCGYC	6 cut(s)	281, 363, 395, 504, 627, 767
BsaJI	CCNNGG	4 cut(s)	114, 588, 733, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 746, 776
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	2 cut(s)	217, 629
Bse1I	ACTGG	1 cut(s)	707
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	4 cut(s)	114, 588, 733, 747
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	4 cut(s)	524, 542, 680, 717
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	2 cut(s)	550, 553
BseXI	GCAGC	4 cut(s)	42, 76, 228, 705
Bsh1236I	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BshNI	GGYRCC	3 cut(s)	280, 626, 766
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	6 cut(s)	44, 218, 398, 512, 630, 808
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	749
BsmI	GAATGC	2 cut(s)	186, 799
BsnI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
Bsp1720I	GCTNAGC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BspCNI	CTCAG	4 cut(s)	525, 541, 681, 718
BspFNI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
BspLI	GGNNCC	4 cut(s)	282, 542, 628, 768
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	63
BspT107I	GGYRCC	3 cut(s)	280, 626, 766
BsrDI	GCAATG	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	217, 629
BsrI	ACTGG	1 cut(s)	707
BssAI	RCCGGY	2 cut(s)	217, 629
BssECI	CCNNGG	4 cut(s)	114, 588, 733, 747
BssMI	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
BssNI	GRCGYC	6 cut(s)	281, 363, 395, 504, 627, 767
BssSI	CACGAG	1 cut(s)	665
BssT1I	CCWWGG	2 cut(s)	114, 588
Bst2BI	CACGAG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	2 cut(s)	101, 310
BstACI	GRCGYC	6 cut(s)	281, 363, 395, 504, 627, 767
BstC8I	GCNNGC	6 cut(s)	35, 279, 355, 441, 564, 631
BstDEI	CTNAG	4 cut(s)	528, 533, 689, 726
BstDSI	CCRYGG	2 cut(s)	114, 747
BstFNI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
BstH2I	RGCGCY	5 cut(s)	284, 482, 599, 630, 770
BstKTI	GATC	6 cut(s)	58, 183, 303, 390, 471, 501
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
BstMCI	CGRYCG	1 cut(s)	501
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	43, 543
BstUI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
BstV1I	GCAGC	4 cut(s)	42, 76, 228, 705
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
BtgI	CCRYGG	2 cut(s)	114, 747
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	6 cut(s)	35, 279, 355, 441, 564, 631
Cfr10I	RCCGGY	2 cut(s)	217, 629
Cfr13I	GGNCC	1 cut(s)	730
CseI	GACGC	7 cut(s)	192, 209, 281, 371, 403, 512, 627
CviAII	CATG	2 cut(s)	115, 376
DdeI	CTNAG	4 cut(s)	528, 533, 689, 726
DinI	GGCGCC	3 cut(s)	282, 628, 768
DpnI	GATC	6 cut(s)	57, 182, 302, 389, 470, 500
DpnII	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
DrdI	GACNNNNNNGTC	3 cut(s)	253, 341, 707
DriI	GACNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	3 cut(s)	253, 341, 707
EaeI	YGGCCR	3 cut(s)	111, 117, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EciI	GGCGGA	3 cut(s)	305, 328, 767
Eco130I	CCWWGG	2 cut(s)	114, 588
Eco57I	CTGAAG	2 cut(s)	80, 440
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	2 cut(s)	114, 588
EgeI	GGCGCC	3 cut(s)	282, 628, 768
EheI	GGCGCC	3 cut(s)	282, 628, 768
ErhI	CCWWGG	2 cut(s)	114, 588
FaeI	CATG	2 cut(s)	118, 379
FaiI	YATR	7 cut(s)	74, 116, 140, 377, 611, 777, 841
FatI	CATG	2 cut(s)	114, 375
FauI	CCCGC	3 cut(s)	41, 42, 60
FspBI	CTAG	3 cut(s)	12, 26, 144
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	5 cut(s)	284, 482, 599, 630, 770
HaeIII	GGCC	6 cut(s)	113, 119, 353, 566, 587, 731
HapII	CCGG	6 cut(s)	44, 218, 398, 512, 630, 808
HgaI	GACGC	7 cut(s)	192, 209, 281, 371, 403, 512, 627
Hin1I	GRCGYC	6 cut(s)	281, 363, 395, 504, 627, 767
Hin1II	CATG	2 cut(s)	118, 379
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	4 cut(s)	18, 161, 335, 455
HpaII	CCGG	6 cut(s)	44, 218, 398, 512, 630, 808
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	8 cut(s)	55, 60, 97, 347, 420, 690, 713, 737
Hpy188III	TCNNGA	2 cut(s)	391, 556
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	840
HpyCH4III	ACNGT	2 cut(s)	101, 310
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	138, 186
HpyF3I	CTNAG	4 cut(s)	528, 533, 689, 726
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	6 cut(s)	281, 363, 395, 504, 627, 767
Hsp92II	CATG	2 cut(s)	118, 379
KasI	GGCGCC	3 cut(s)	280, 626, 766
KroI	GCCGGC	1 cut(s)	629
KroNI	GCCGGC	1 cut(s)	631
Kzo9I	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
LmnI	GCTCC	3 cut(s)	448, 540, 615
Lsp1109I	GCAGC	4 cut(s)	42, 76, 228, 705
MaeI	CTAG	3 cut(s)	12, 26, 144
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	6 cut(s)	57, 182, 302, 389, 470, 500
MboI	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	3 cut(s)	113, 119, 566
MluCI	AATT	1 cut(s)	259
MluI	ACGCGT	1 cut(s)	201
MluNI	TGGCCA	3 cut(s)	113, 119, 566
Mly113I	GGCGCC	3 cut(s)	281, 627, 767
MlyI	GAGTC	3 cut(s)	170, 329, 449
MmeI	TCCRAC	3 cut(s)	33, 483, 636
Mox20I	TGGCCA	3 cut(s)	113, 119, 566
MreI	CGCCGGCG	1 cut(s)	629
MroNI	GCCGGC	1 cut(s)	629
MscI	TGGCCA	3 cut(s)	113, 119, 566
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	3 cut(s)	113, 119, 566
MspA1I	CMGCKG	3 cut(s)	67, 427, 532
MspI	CCGG	6 cut(s)	44, 218, 398, 512, 630, 808
MspR9I	CCNGG	2 cut(s)	45, 545
Mva1269I	GAATGC	2 cut(s)	186, 799
MvaI	CCWGG	1 cut(s)	545
MvnI	CGCG	9 cut(s)	203, 275, 327, 497, 509, 550, 638, 653, 722
NaeI	GCCGGC	1 cut(s)	631
NarI	GGCGCC	3 cut(s)	281, 627, 767
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
NgoMIV	GCCGGC	1 cut(s)	629
NlaIII	CATG	2 cut(s)	118, 379
NlaIV	GGNNCC	4 cut(s)	282, 542, 628, 768
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	3 cut(s)	170, 245, 672
PctI	GAATGC	2 cut(s)	186, 799
PdiI	GCCGGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	365
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	3 cut(s)	169, 329, 449
PluTI	GGCGCC	3 cut(s)	284, 630, 770
PpsI	GAGTC	3 cut(s)	169, 329, 449
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	4 cut(s)	282, 542, 628, 768
PspPI	GGNCC	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	365
PvuI	CGATCG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	6 cut(s)	55, 180, 300, 387, 468, 498
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	3 cut(s)	170, 329, 449
ScrFI	CCNGG	2 cut(s)	45, 545
SduI	GDGCHC	1 cut(s)	609
SfoI	GGCGCC	3 cut(s)	282, 628, 768
SgrAI	CRCCGGYG	2 cut(s)	217, 629
Sse9I	AATT	1 cut(s)	259
SspDI	GGCGCC	3 cut(s)	280, 626, 766
SspMI	CTAG	3 cut(s)	12, 26, 144
StyD4I	CCNGG	2 cut(s)	43, 543
StyI	CCWWGG	2 cut(s)	114, 588
TaaI	ACNGT	2 cut(s)	101, 310
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	4 cut(s)	209, 293, 501, 641
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	30, 64, 241, 693
Tsp45I	GTSAC	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XspI	CTAG	3 cut(s)	12, 26, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.