Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

22065617 .. 22067233

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G59940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCAAAGACGGTGGCGTTTCTTGTCTACGAAGGTCGGAGATGATCGGTATAGGAATCGGAGAACTTGAATCTCCGCCGCTAGATTCTGATCAAGTCCACGTTCTCGCCGTTGATGACAGCCTAGTTGATCGAATAGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAGTCACGGCGGTTGATAGCGGATGGCGTGCTCTCGAATTCTTAGGATTAGACGACGACAAAGCCGCCGTCGAATTCGATAGATTGAAGGTGGATTTGATCATCACTGATTACTGTATGCCTGGAATGACTGGATACGAGCTTCTGAAAAAGATTAAGGAATCGACAAGTTTTAAGGAAGTTCCTGTTGTAATTATGTCGTCGGAGAATGTAATGACTCGTATCGACAGATGTCTTGAAGAAGGTGCGGAGGATTTTTTACTAAAACCGGTGAAACTCGCCGACGTGAAACGTCTGAGGAGTTACTTGACGAGAGACGTTAAAGTCGCCGCCGAAGGAAACAAACGGAAGCTGACCACTCCACCGCCGCCGCCTCCGCTCTCAGCCACATCCTCGATGGAATCTTCGGACTCTACGGTGGAATCGCCTCTGTCTATGGTTGACGATGAAGATTCGTTGACAATGTCGCCGGAGTCTGCAACTTCGCTTGTGGATTCGCCGATGAGGAGTCCCGGATTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

231

Amino Acids

25.25

Weight (kDa)

4.67

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	127 - 245	4.9e-20	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	209, 245
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	71, 259, 410
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	313, 523, 692
AluI	AGCT	3 cut(s)	313, 523, 692
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	480
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	209, 245
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AsiGI	ACCGGT	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	205
BccI	CCATC	2 cut(s)	189, 562
BceAI	ACGGC	3 cut(s)	95, 195, 224
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	299
BclI	TGATCA	2 cut(s)	91, 270
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	2 cut(s)	83, 125
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	5 cut(s)	80, 237, 501, 539, 542
BlsI	GCNGC	5 cut(s)	81, 238, 502, 540, 543
Bme1390I	CCNGG	2 cut(s)	294, 684
BmgBI	CACGTC	1 cut(s)	457
BmrFI	CCNGG	2 cut(s)	294, 684
BoxI	GACNNNNGTC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	164, 200, 560
BseJI	GATNNNNATC	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	458, 567
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	484, 691
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	440, 641, 684
BslFI	GGGAC	1 cut(s)	666
BsmAI	GTCTC	1 cut(s)	480
BsmBI	CGTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	45, 91, 130, 270
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	459, 566
BspT104I	TTCGAA	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	439
BssMI	GATC	4 cut(s)	45, 91, 130, 270
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	14, 287, 589
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	4 cut(s)	214, 467, 553, 693
BstF5I	GGATG	3 cut(s)	164, 200, 560
BstKTI	GATC	4 cut(s)	48, 94, 133, 273
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	4 cut(s)	45, 91, 130, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNI	CCWGG	1 cut(s)	294
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	292, 682
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	164, 200, 560
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	439
CspAI	ACCGGT	1 cut(s)	439
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	7 cut(s)	5, 123, 236, 313, 523, 557, 692
CviKI_1	RGCY	7 cut(s)	5, 123, 236, 313, 523, 557, 692
DdeI	CTNAG	4 cut(s)	214, 467, 553, 693
DpnI	GATC	4 cut(s)	47, 93, 132, 272
DpnII	GATC	4 cut(s)	45, 91, 130, 270
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	66
EcoRI	GAATTC	2 cut(s)	209, 245
EcoRII	CCWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	480
FaiI	YATR	4 cut(s)	53, 290, 368, 608
FaqI	GGGAC	1 cut(s)	666
FbaI	TGATCA	2 cut(s)	91, 270
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	80, 237, 501, 539, 542
FokI	GGATG	3 cut(s)	151, 207, 547
Fsp4HI	GCNGC	5 cut(s)	80, 237, 501, 539, 542
FspBI	CTAG	2 cut(s)	83, 125
GluI	GCNGC	5 cut(s)	80, 237, 501, 539, 542
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	440, 641, 684
HincII	GTYRAC	2 cut(s)	613, 630
HindII	GTYRAC	2 cut(s)	613, 630
HpaII	CCGG	3 cut(s)	440, 641, 684
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	4 cut(s)	29, 100, 613, 630
Hpy188I	TCNGA	7 cut(s)	40, 62, 91, 318, 376, 468, 580
Hpy188III	TCNNGA	2 cut(s)	206, 407
Hpy8I	GTNNAC	4 cut(s)	29, 100, 613, 630
Hpy99I	CGWCG	4 cut(s)	230, 245, 376, 458
HpyAV	CCTTC	4 cut(s)	27, 253, 407, 500
HpyCH4III	ACNGT	3 cut(s)	14, 287, 589
HpyCH4IV	ACGT	4 cut(s)	102, 456, 463, 489
HpyCH4V	TGCA	2 cut(s)	171, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	4 cut(s)	214, 467, 553, 693
HpySE526I	ACGT	4 cut(s)	102, 456, 463, 489
Ksp22I	TGATCA	2 cut(s)	91, 270
Kzo9I	GATC	4 cut(s)	45, 91, 130, 270
LpnPI	CCDG	7 cut(s)	181, 279, 288, 306, 369, 453, 654
MaeI	CTAG	2 cut(s)	83, 125
MaeII	ACGT	4 cut(s)	102, 456, 463, 489
MaeIII	GTNAC	2 cut(s)	175, 473
MalI	GATC	4 cut(s)	47, 93, 132, 272
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	4 cut(s)	45, 91, 130, 270
MboII	GAAGA	3 cut(s)	422, 567, 632
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	209, 245, 363
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	382, 575, 653, 688
MmeI	TCCRAC	2 cut(s)	18, 354
MnlI	CCTC	6 cut(s)	415, 462, 555, 574, 609, 669
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	327, 345, 492
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	440, 641, 684
MspR9I	CCNGG	2 cut(s)	294, 684
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	547
NciI	CCSGG	1 cut(s)	684
NdeII	GATC	4 cut(s)	45, 91, 130, 270
NmuCI	GTSAC	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	9 cut(s)	57, 71, 86, 159, 332, 572, 593, 623, 665
PflFI	GACNNNGTC	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	682
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	5 cut(s)	81, 238, 502, 540, 543
PleI	GAGTC	4 cut(s)	382, 575, 652, 687
PpsI	GAGTC	4 cut(s)	382, 575, 652, 687
PshAI	GACNNNNGTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	327, 345, 492
SatI	GCNGC	5 cut(s)	80, 237, 501, 539, 542
Sau3AI	GATC	4 cut(s)	45, 91, 130, 270
SchI	GAGTC	4 cut(s)	382, 575, 653, 688
ScrFI	CCNGG	2 cut(s)	294, 684
SduI	GDGCHC	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	157
Sse9I	AATT	3 cut(s)	209, 245, 363
SspMI	CTAG	2 cut(s)	83, 125
StyD4I	CCNGG	2 cut(s)	292, 682
TaaI	ACNGT	3 cut(s)	14, 287, 589
TaiI	ACGT	4 cut(s)	105, 459, 466, 492
TaqI	TCGA	9 cut(s)	133, 144, 157, 207, 243, 249, 335, 396, 566
TasI	AATT	3 cut(s)	209, 245, 363
TauI	GCSGC	5 cut(s)	82, 239, 503, 541, 544
TfiI	GAWTC	9 cut(s)	57, 71, 86, 159, 332, 572, 593, 623, 665
Tru1I	TTAA	3 cut(s)	327, 345, 492
Tru9I	TTAA	3 cut(s)	327, 345, 492
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	634
XapI	RAATTY	2 cut(s)	209, 245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	2 cut(s)	83, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.