Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Forward (+)

67932425 .. 67934770

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG443400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCCAGGAACGGTGTCGTTTCATGGCGGAGGAGGTCGGACAAGCTCGAAGGCTTGGATCTTTCCAGTTCCGAAGAAGCTCACGTCCTCGCCGTCGATGACAGCCTCGTCGATCGCAAGGTCATTGAGCGCTTGCTCAGAATCTCCTCTTGCAAAGTGACCGCTGTGGACAGTGGTATGAGAGCTCTGCAATTCCTAGGTTTGGACGAGGAGAAGAGCACCTCGGTCGGTTTTGATGGCTTGAAGGTGGATCTGATTATCACGGATTACTGCATGCCTGGTATGACCGGATATGAACTGCTAAAGAAAATCAAGGAATCCACGACTTTTAAAGAGATTCCGGTTGTGATAATGTCCTCTGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGGGCAGAAGATTTCATAGTGAAGCCGGTGAAGTTATCGGACGTGAAAAGGCTTAAGGATTACATGACAAAAGACGTCGTCGCCGGAGGAGTAGAAGAGAGTGGGATCAACAAGAGAAAGCTACGAGAACCGTCCGATCAGCCACCGTCTCCGCCGTCAATTTTACCGTCATCCCCAACGTCAGCCCTATCATCACCTTCACCTTCACCTTCACCTTCACCGTCACCGTCACCGTCACCGTCACCATCACCGCCGCTTTCATCGTCGTCCTCGTTCTCAGCTCCATCGTCTCCCACGTCGCTTGACTCTCCATATCACACGGCTCAAAATGACCAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

246

Amino Acids

26.57

Weight (kDa)

5.36

Isoelectric Point (pI)

87.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	29 - 148	3.2e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AatII	GACGTC	1 cut(s)	477
AccII	CGCG	1 cut(s)	376
AciI	CCGC	5 cut(s)	28, 162, 551, 650, 653
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	3 cut(s)	66, 258, 512
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	474
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	244
AjiI	CACGTC	3 cut(s)	85, 442, 696
AjnI	CCWGG	2 cut(s)	5, 277
AluBI	AGCT	5 cut(s)	46, 80, 185, 520, 680
AluI	AGCT	5 cut(s)	46, 80, 185, 520, 680
Alw21I	GWGCWC	2 cut(s)	187, 221
Alw26I	GTCTC	2 cut(s)	552, 693
AlwI	GGATC	3 cut(s)	66, 258, 512
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	1 cut(s)	3
AspA2I	CCTAGG	1 cut(s)	196
AspLEI	GCGC	3 cut(s)	132, 376, 378
AvrII	CCTAGG	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	2 cut(s)	187, 221
BccI	CCATC	3 cut(s)	230, 652, 691
BceAI	ACGGC	3 cut(s)	77, 538, 735
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	2 cut(s)	7, 279
BcoDI	GTCTC	2 cut(s)	552, 693
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	133
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	1 cut(s)	653
BlnI	CCTAGG	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	2 cut(s)	7, 279
BmgBI	CACGTC	3 cut(s)	85, 442, 696
BmrFI	CCNGG	2 cut(s)	7, 279
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	196, 222
BsaWI	WCCGGW	2 cut(s)	287, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	7, 279
BseDI	CCNNGG	2 cut(s)	196, 222
BseGI	GGATG	1 cut(s)	569
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	3 cut(s)	151, 351, 690
BseNI	ACTGG	1 cut(s)	66
BsePI	GCGCGC	1 cut(s)	374
BseRI	GAGGAG	4 cut(s)	46, 136, 224, 501
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	2 cut(s)	115, 228
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	2 cut(s)	115, 228
BsiHKAI	GWGCWC	2 cut(s)	187, 221
BsiSI	CCGG	4 cut(s)	288, 341, 425, 483
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	552, 693
BsmBI	CGTCTC	2 cut(s)	552, 693
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	187, 221
Bsp143I	GATC	5 cut(s)	58, 112, 250, 504, 535
BspACI	CCGC	5 cut(s)	28, 162, 551, 650, 653
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	150, 352, 689
BspFNI	CGCG	1 cut(s)	376
BspPI	GGATC	3 cut(s)	66, 258, 512
BspQI	GCTCTTC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	196, 222
BssHII	GCGCGC	1 cut(s)	374
BssMI	GATC	5 cut(s)	58, 112, 250, 504, 535
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	7, 279
Bst4CI	ACNGT	9 cut(s)	14, 173, 531, 546, 567, 621, 627, 633, 639
Bst6I	CTCTTC	2 cut(s)	209, 489
BstACI	GRCGYC	1 cut(s)	474
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	134, 275, 376
BstDEI	CTNAG	3 cut(s)	137, 360, 676
BstF5I	GGATG	1 cut(s)	569
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	3 cut(s)	132, 376, 378
BstKTI	GATC	5 cut(s)	61, 115, 253, 507, 538
BstMAI	GTCTC	2 cut(s)	552, 693
BstMBI	GATC	5 cut(s)	58, 112, 250, 504, 535
BstMCI	CGRYCG	2 cut(s)	115, 228
BstNI	CCWGG	2 cut(s)	7, 279
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	5, 277
BstUI	CGCG	1 cut(s)	376
BstX2I	RGATCY	2 cut(s)	58, 250
BstYI	RGATCY	2 cut(s)	58, 250
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	3 cut(s)	85, 442, 696
BtsCI	GGATG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	178, 736
Cac8I	GCNNGC	3 cut(s)	134, 275, 376
CfoI	GCGC	3 cut(s)	132, 376, 378
Cfr10I	RCCGGY	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	3 cut(s)	24, 274, 463
DdeI	CTNAG	3 cut(s)	137, 360, 676
DpnI	GATC	5 cut(s)	60, 114, 252, 506, 537
DpnII	GATC	5 cut(s)	58, 112, 250, 504, 535
DraI	TTTAAA	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	209, 489
EarI	CTCTTC	2 cut(s)	209, 489
EciI	GGCGGA	2 cut(s)	43, 540
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	187
Eco47III	AGCGCT	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	5, 277
EcoT14I	CCWWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	2 cut(s)	552, 693
FaeI	CATG	3 cut(s)	27, 277, 466
FaiI	YATR	9 cut(s)	25, 179, 275, 284, 294, 380, 416, 464, 712
FatI	CATG	3 cut(s)	23, 273, 462
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	3 cut(s)	131, 375, 377
GluI	GCNGC	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	288, 341, 425, 483
HhaI	GCGC	3 cut(s)	132, 376, 378
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	27, 277, 466
Hin6I	GCGC	3 cut(s)	130, 374, 376
HinP1I	GCGC	3 cut(s)	130, 374, 376
HinfI	GANTC	4 cut(s)	141, 317, 337, 704
HpaII	CCGG	4 cut(s)	288, 341, 425, 483
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	7 cut(s)	40, 73, 140, 255, 361, 439, 535
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	6 cut(s)	98, 113, 479, 482, 667, 700
HpyAV	CCTTC	7 cut(s)	44, 238, 392, 606, 612, 618, 624
HpyCH4III	ACNGT	9 cut(s)	14, 173, 531, 546, 567, 621, 627, 633, 639
HpyCH4IV	ACGT	6 cut(s)	84, 366, 441, 474, 578, 695
HpyCH4V	TGCA	3 cut(s)	153, 190, 273
HpyF3I	CTNAG	3 cut(s)	137, 360, 676
HpySE526I	ACGT	6 cut(s)	84, 366, 441, 474, 578, 695
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	27, 277, 466
HspAI	GCGC	3 cut(s)	130, 374, 376
Kzo9I	GATC	5 cut(s)	58, 112, 250, 504, 535
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	9 cut(s)	19, 79, 264, 291, 301, 354, 370, 438, 496
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	6 cut(s)	84, 366, 441, 474, 578, 695
MaeIII	GTNAC	5 cut(s)	157, 621, 627, 633, 639
MalI	GATC	5 cut(s)	60, 114, 252, 506, 537
MboI	GATC	5 cut(s)	58, 112, 250, 504, 535
MboII	GAAGA	5 cut(s)	86, 226, 407, 419, 506
MflI	RGATCY	2 cut(s)	58, 250
MhlI	GDGCHC	2 cut(s)	187, 221
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	191, 558
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	330, 453
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	164
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	4 cut(s)	288, 341, 425, 483
MspR9I	CCNGG	2 cut(s)	7, 279
MvaI	CCWGG	2 cut(s)	7, 279
MvnI	CGCG	1 cut(s)	376
NdeII	GATC	5 cut(s)	58, 112, 250, 504, 535
NlaIII	CATG	3 cut(s)	27, 277, 466
NmuCI	GTSAC	5 cut(s)	157, 621, 627, 633, 639
NspI	RCATGY	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	277
PauI	GCGCGC	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 668, 692
PfeI	GAWTC	3 cut(s)	141, 317, 337
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	654
Ple19I	CGATCG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	5, 277
PspGI	CCWGG	2 cut(s)	5, 277
PsuI	RGATCY	2 cut(s)	58, 250
PsyI	GACNNNGTC	1 cut(s)	476
PteI	GCGCGC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	330, 453
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	5 cut(s)	58, 112, 250, 504, 535
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	2 cut(s)	7, 279
SduI	GDGCHC	2 cut(s)	187, 221
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	191, 558
SsiI	CCGC	5 cut(s)	28, 162, 551, 650, 653
SspMI	CTAG	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	5, 277
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	9 cut(s)	14, 173, 531, 546, 567, 621, 627, 633, 639
TaiI	ACGT	6 cut(s)	87, 369, 444, 477, 581, 698
TaqI	TCGA	3 cut(s)	48, 96, 111
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	191, 558
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	3 cut(s)	141, 317, 337
Tru1I	TTAA	2 cut(s)	330, 453
Tru9I	TTAA	2 cut(s)	330, 453
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	5 cut(s)	157, 621, 627, 633, 639
Tsp45I	GTSAC	5 cut(s)	157, 621, 627, 633, 639
TspDTI	ATGAA	4 cut(s)	12, 309, 403, 648
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	277
XmaJI	CCTAGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.