Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

5926618 .. 5928195

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1084400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTATTTGGACCCTTGATTAATTTTTCAAGGTCTGATTGGGAAGATGGCATCATAGTGGATTTGAGGATCTCAGCGTTTTGTGGATTAAAATTAAACAAATATTATAAAGTAGATTTTGAGATTTGTAAGAGAGAGAAAGATTTGATTTGGCGAGAGAGAGACCAATACTATATTAAGAGAGAGAAACCCACACACTCCGTGACGCAGACAGACAGACAACTTTCACCTCGCCATTTCTCTCCACCGTTTGTCCACTGTATAAAACTTCGGCCACAGAAAGCAGGGCAACCTTTGTGTTTTTTTTCTTCTCCGATTTCAATCCGGAAGATGGCGAGGAACGGTGCCGCTTCGTGGCGGAGGAAGTCGGAGAAGCTCGATCTCTCGCCGCCGTTGATTTCGGAAGAAGCTCACGTTCTCGCCGTCGACGACAGCCTCGTCGACCGCAAGGTCATCGAGCGATTGCTTAAAATTTCCTCCTGCAAAGTGACGACGGTTGACAGCGGAAGAAGAGCTCTGCAGTTCCTCGGCCTGGACGAGGAGAAGAGCTCCACCGCCGGATTCGACGGCTTGAAGGTGGACCTGATCATCACGGATTACTGTATGCCTGGGATGACCGGCTACGAATTGCTCAAGAAAATCAAAGAATCTTCCACATTCAAAGCAACTCCCGTCGTGATTATGTCATCCGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGTGCGGAGGACTTCATAGTTAAACCGGTGAAGTTAGCAGACGTCAAGAGGCTGAAGGATTACATGACGACGGCGAGGGATGTCGGAGTGGAAGAGAGCGGTGGAGGAATGAACAAGAGAAAGCTACGCGAGCCGTGTGATCCGACGATTGCTCCATCACCGCCGTCCAGTTTTCCGTCGTCGCCGTCGTCGTCCTCATCGTCTCCGTCTAAATCCCCGTCGCCTCCTTTGTCATCGTCGTTCTCGGCTCCGTCGTCGCCCACGCCGCTTGATTCTCCGATCCGACGGTTGAAAATGACCAACGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

347

Amino Acids

38.67

Weight (kDa)

9.14

Isoelectric Point (pI)

66.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	139 - 258	2.1e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AasI	GACNNNNNNGTC	2 cut(s)	437, 449
AatII	GACGTC	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	828
AccI	GTMKAC	2 cut(s)	426, 441
AccII	CGCG	2 cut(s)	706, 858
AccIII	TCCGGA	1 cut(s)	324
AclI	AACGTT	1 cut(s)	696
AclWI	GGATC	3 cut(s)	77, 863, 1003
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	803
AcyI	GRCGYC	1 cut(s)	771
AdeI	CACNNNGTG	1 cut(s)	202
AfiI	CCNNNNNNNGG	4 cut(s)	331, 354, 532, 538
AgeI	ACCGGT	1 cut(s)	754
AgsI	TTSAA	5 cut(s)	30, 321, 574, 661, 1021
AjnI	CCWGG	2 cut(s)	531, 607
AluBI	AGCT	5 cut(s)	376, 410, 515, 549, 853
AluI	AGCT	5 cut(s)	376, 410, 515, 549, 853
Alw21I	GWGCWC	2 cut(s)	517, 551
Alw26I	GTCTC	2 cut(s)	156, 936
AlwI	GGATC	3 cut(s)	77, 863, 1003
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	2 cut(s)	272, 529
ApoI	RAATTY	1 cut(s)	471
AseI	ATTAAT	1 cut(s)	21
AsiGI	ACCGGT	1 cut(s)	754
AspLEI	GCGC	2 cut(s)	706, 708
AspS9I	GGNCC	2 cut(s)	11, 580
AsuHPI	GGTGA	3 cut(s)	219, 769, 879
AvaII	GGWCC	2 cut(s)	11, 580
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	2 cut(s)	517, 551
Bbv12I	GWGCWC	2 cut(s)	517, 551
BccI	CCATC	3 cut(s)	41, 325, 892
BceAI	ACGGC	7 cut(s)	376, 407, 583, 816, 847, 877, 898
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	2 cut(s)	533, 609
BclI	TGATCA	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	156, 936
BfmI	CTRYAG	1 cut(s)	518
BisI	GCNGC	3 cut(s)	348, 389, 995
BlsI	GCNGC	3 cut(s)	349, 390, 996
Bme1390I	CCNGG	2 cut(s)	533, 609
Bme18I	GGWCC	2 cut(s)	11, 580
BmgT120I	GGNCC	2 cut(s)	11, 580
BmiI	GGNNCC	3 cut(s)	13, 346, 978
BmrFI	CCNGG	2 cut(s)	533, 609
BmsI	GCATC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpuEI	CTTGAG	1 cut(s)	617
BsaBI	GATNNNNATC	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	526, 608
BsaWI	WCCGGW	2 cut(s)	324, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 354, 532, 538
Bse118I	RCCGGY	2 cut(s)	617, 754
Bse1I	ACTGG	1 cut(s)	897
Bse8I	GATNNNNATC	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	533, 609
BseDI	CCNNGG	2 cut(s)	526, 608
BseGI	GGATG	3 cut(s)	618, 686, 814
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	4 cut(s)	331, 354, 532, 538
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	897
BsePI	GCGCGC	1 cut(s)	704
BseRI	GAGGAG	1 cut(s)	554
Bsh1236I	CGCG	2 cut(s)	706, 858
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	274, 531
BshNI	GGYRCC	1 cut(s)	344
BshTI	ACCGGT	1 cut(s)	754
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	517, 551
BsiSI	CCGG	4 cut(s)	325, 558, 618, 755
BslI	CCNNNNNNNGG	4 cut(s)	331, 354, 532, 538
BsmAI	GTCTC	2 cut(s)	156, 936
BsmBI	CGTCTC	1 cut(s)	936
BsnI	GGCC	2 cut(s)	274, 531
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	517, 551
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	69, 379, 585, 868, 1008
BspANI	GGCC	2 cut(s)	274, 531
BspCNI	CTCAG	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	706, 858
BspLI	GGNNCC	3 cut(s)	13, 346, 978
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	3 cut(s)	77, 863, 1003
BspQI	GCTCTTC	2 cut(s)	505, 539
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	828
BsrFI	RCCGGY	2 cut(s)	617, 754
BsrI	ACTGG	1 cut(s)	897
BssAI	RCCGGY	2 cut(s)	617, 754
BssECI	CCNNGG	2 cut(s)	526, 608
BssHII	GCGCGC	1 cut(s)	704
BssMI	GATC	5 cut(s)	69, 379, 585, 868, 1008
BssNI	GRCGYC	1 cut(s)	771
Bst2UI	CCWGG	2 cut(s)	533, 609
Bst4CI	ACNGT	6 cut(s)	249, 260, 344, 496, 602, 1017
Bst6I	CTCTTC	3 cut(s)	505, 539, 816
BstACI	GRCGYC	1 cut(s)	771
BstC8I	GCNNGC	2 cut(s)	706, 860
BstDEI	CTNAG	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	618, 686, 814
BstFNI	CGCG	2 cut(s)	706, 858
BstHHI	GCGC	2 cut(s)	706, 708
BstKTI	GATC	5 cut(s)	72, 382, 588, 871, 1011
BstMAI	GTCTC	2 cut(s)	156, 936
BstMBI	GATC	5 cut(s)	69, 379, 585, 868, 1008
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	859, 994
BstNI	CCWGG	2 cut(s)	533, 609
BstSCI	CCNGG	2 cut(s)	531, 607
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	2 cut(s)	706, 858
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	274, 531
BtsCI	GGATG	3 cut(s)	618, 686, 814
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	706, 860
CfoI	GCGC	2 cut(s)	706, 708
Cfr10I	RCCGGY	2 cut(s)	617, 754
Cfr13I	GGNCC	2 cut(s)	11, 580
CseI	GACGC	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	979, 1014
CviAII	CATG	1 cut(s)	793
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	5 cut(s)	71, 381, 587, 870, 1010
DpnII	GATC	5 cut(s)	69, 379, 585, 868, 1008
DraIII	CACNNNGTG	1 cut(s)	202
DrdI	GACNNNNNNGTC	2 cut(s)	437, 449
DseDI	GACNNNNNNGTC	2 cut(s)	437, 449
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	3 cut(s)	505, 539, 816
EarI	CTCTTC	3 cut(s)	505, 539, 816
EciI	GGCGGA	1 cut(s)	373
Ecl136II	GAGCTC	2 cut(s)	515, 549
Eco24I	GRGCYC	2 cut(s)	517, 551
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	11, 580
Eco53kI	GAGCTC	2 cut(s)	515, 549
Eco57I	CTGAAG	1 cut(s)	803
EcoICRI	GAGCTC	2 cut(s)	515, 549
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	531, 607
EcoT38I	GRGCYC	2 cut(s)	517, 551
Esp3I	CGTCTC	1 cut(s)	936
FaeI	CATG	1 cut(s)	796
FaiI	YATR	9 cut(s)	56, 108, 174, 263, 605, 683, 710, 746, 794
FatI	CATG	1 cut(s)	792
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	2 cut(s)	426, 441
Fnu4HI	GCNGC	3 cut(s)	348, 389, 995
FokI	GGATG	3 cut(s)	625, 673, 821
FriOI	GRGCYC	2 cut(s)	517, 551
Fsp4HI	GCNGC	3 cut(s)	348, 389, 995
GlaI	GCGC	2 cut(s)	705, 707
GluI	GCNGC	3 cut(s)	348, 389, 995
HaeIII	GGCC	2 cut(s)	274, 531
HapII	CCGG	4 cut(s)	325, 558, 618, 755
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	706, 708
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	1 cut(s)	796
Hin6I	GCGC	2 cut(s)	704, 706
HinP1I	GCGC	2 cut(s)	704, 706
HincII	GTYRAC	3 cut(s)	427, 442, 499
HindII	GTYRAC	3 cut(s)	427, 442, 499
HinfI	GANTC	3 cut(s)	561, 647, 1001
HpaII	CCGG	4 cut(s)	325, 558, 618, 755
HphI	GGTGA	3 cut(s)	219, 769, 879
Hpy166II	GTNNAC	5 cut(s)	256, 427, 442, 499, 580
Hpy188I	TCNGA	9 cut(s)	37, 315, 370, 403, 691, 815, 873, 1008, 1013
Hpy188III	TCNNGA	4 cut(s)	325, 634, 676, 775
Hpy8I	GTNNAC	5 cut(s)	256, 427, 442, 499, 580
HpyAV	CCTTC	3 cut(s)	568, 722, 778
HpyCH4III	ACNGT	6 cut(s)	249, 260, 344, 496, 602, 1017
HpyCH4IV	ACGT	3 cut(s)	414, 696, 771
HpyCH4V	TGCA	2 cut(s)	483, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	859, 994
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	3 cut(s)	414, 696, 771
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	1 cut(s)	796
HspAI	GCGC	2 cut(s)	704, 706
Kpn2I	TCCGGA	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	5 cut(s)	69, 379, 585, 868, 1008
LguI	GCTCTTC	2 cut(s)	505, 539
LmnI	GCTCC	3 cut(s)	554, 886, 982
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	3 cut(s)	414, 696, 771
MaeIII	GTNAC	2 cut(s)	202, 487
MalI	GATC	5 cut(s)	71, 381, 587, 870, 1010
MbiI	CCGCTC	1 cut(s)	828
MboI	GATC	5 cut(s)	69, 379, 585, 868, 1008
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	517, 551
MluCI	AATT	4 cut(s)	22, 92, 471, 626
MmeI	TCCRAC	4 cut(s)	348, 793, 896, 1036
MroI	TCCGGA	1 cut(s)	324
MseI	TTAA	6 cut(s)	21, 89, 95, 177, 468, 750
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	4 cut(s)	325, 558, 618, 755
MspR9I	CCNGG	2 cut(s)	533, 609
MvaI	CCWGG	2 cut(s)	533, 609
MvnI	CGCG	2 cut(s)	706, 858
MwoI	GCNNNNNNNGC	2 cut(s)	859, 994
NdeII	GATC	5 cut(s)	69, 379, 585, 868, 1008
NlaIII	CATG	1 cut(s)	796
NlaIV	GGNNCC	3 cut(s)	13, 346, 978
NmeAIII	GCCGAG	2 cut(s)	507, 953
NmuCI	GTSAC	2 cut(s)	202, 487
PauI	GCGCGC	1 cut(s)	704
PciSI	GCTCTTC	2 cut(s)	505, 539
PcsI	WCGNNNNNNNCGW	8 cut(s)	420, 426, 435, 534, 914, 917, 926, 980
PfeI	GAWTC	3 cut(s)	561, 647, 1001
PinAI	ACCGGT	1 cut(s)	754
PkrI	GCNGC	3 cut(s)	349, 390, 996
PshBI	ATTAAT	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	108
Psp124BI	GAGCTC	2 cut(s)	517, 551
Psp1406I	AACGTT	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	531, 607
PspGI	CCWGG	2 cut(s)	531, 607
PspN4I	GGNNCC	3 cut(s)	13, 346, 978
PspPI	GGNCC	2 cut(s)	11, 580
PstI	CTGCAG	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	69
PteI	GCGCGC	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	2 cut(s)	517, 551
SalI	GTCGAC	2 cut(s)	425, 440
SapI	GCTCTTC	2 cut(s)	505, 539
SaqAI	TTAA	6 cut(s)	21, 89, 95, 177, 468, 750
SatI	GCNGC	3 cut(s)	348, 389, 995
Sau3AI	GATC	5 cut(s)	69, 379, 585, 868, 1008
Sau96I	GGNCC	2 cut(s)	11, 580
ScrFI	CCNGG	2 cut(s)	533, 609
SduI	GDGCHC	2 cut(s)	517, 551
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	518
SgrDI	CGTCGACG	1 cut(s)	425
SinI	GGWCC	2 cut(s)	11, 580
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	22, 92, 471, 626
SspI	AATATT	1 cut(s)	104
SstI	GAGCTC	2 cut(s)	517, 551
StyD4I	CCNGG	2 cut(s)	531, 607
TaaI	ACNGT	6 cut(s)	249, 260, 344, 496, 602, 1017
TaiI	ACGT	3 cut(s)	417, 699, 774
TaqI	TCGA	5 cut(s)	378, 426, 441, 456, 564
TasI	AATT	4 cut(s)	22, 92, 471, 626
TauI	GCSGC	3 cut(s)	350, 391, 997
TfiI	GAWTC	3 cut(s)	561, 647, 1001
Tru1I	TTAA	6 cut(s)	21, 89, 95, 177, 468, 750
Tru9I	TTAA	6 cut(s)	21, 89, 95, 177, 468, 750
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	2 cut(s)	202, 487
Tsp45I	GTSAC	2 cut(s)	202, 487
TspDTI	ATGAA	2 cut(s)	733, 854
TspGWI	ACGGA	5 cut(s)	190, 608, 894, 924, 969
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	11, 580
VspI	ATTAAT	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	536
XapI	RAATTY	1 cut(s)	471
XmiI	GTMKAC	2 cut(s)	426, 441
ZraI	GACGTC	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.