Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

5983543 .. 5984971

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1085200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGAGGAACGGCGTCGTTTCATGGCGGAGGAGGTCGGAGAAGCTCGACCTCTCGCCGCCGTTGATTTCGGAAGAAGCTCACGTGCTCGCCGTCGACGACAGCCTCGTCGATCGCAAGGTCATCGAGCGGTTGCTCAAAATCTCCTCCTGCAAAGTGACGGCTGTTGACAGCGGAAGACGAGCTCTGCAGTTCCTCGGCCTGGACGAGGAGAAGAGCTCCACCGTCGGATTCGACGGGTTGAAGGTGGATCTGATCATCACGGATTACTGTATGCCCGGAATGACCGGCTACGAATTGCTCAAGAAAATCAAAGAATCTTCCGCATTCAAAGAGATTCCCGTCGTGATTATGTCATCCGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGCGCGGAGGATTTCATAGTGAAACCGGTGAAGTTAGCGGACGTCAAGAGGCTGAAGGATTACATGACGACCGCGAGGGATGTCGGAGTGGAGGAGAGCGGCGGAGGAATGAACAAGAGAAAGCTACGGGAGCCGTGTGATCTGATGATGCCCTCATCACCGCCTTCCATTTTATCGTCGTCTCCTTCGTCGTCCTTATCGTCGCCGTCTAAATCTCCGTCGCCTCCCATGTCATCGTCGTTCTCGGCTCCATCGTCGCCCACGTCGCTTGATTCTCCGATCCGACGGTTCAAAATGACCAACGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

237

Amino Acids

25.82

Weight (kDa)

7.6

Isoelectric Point (pI)

80.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	29 - 148	1.1e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AatII	GACGTC	1 cut(s)	444
AccBSI	CCGCTC	2 cut(s)	130, 498
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	3 cut(s)	376, 404, 473
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	2 cut(s)	258, 673
AcuI	CTGAAG	1 cut(s)	473
AcvI	CACGTG	1 cut(s)	85
AcyI	GRCGYC	2 cut(s)	15, 441
AfiI	CCNNNNNNNGG	2 cut(s)	202, 208
AgeI	ACCGGT	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	244, 331, 691
AjiI	CACGTC	1 cut(s)	663
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	5 cut(s)	46, 80, 185, 219, 523
AluI	AGCT	5 cut(s)	46, 80, 185, 219, 523
Alw21I	GWGCWC	3 cut(s)	90, 187, 221
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	2 cut(s)	258, 673
AoxI	GGCC	1 cut(s)	199
AsiGI	ACCGGT	1 cut(s)	424
AspLEI	GCGC	3 cut(s)	376, 378, 404
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	439, 549
BanII	GRGCYC	2 cut(s)	187, 221
BbrPI	CACGTG	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	90, 187, 221
BccI	CCATC	1 cut(s)	658
BceAI	ACGGC	6 cut(s)	28, 46, 77, 177, 517, 589
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	59, 499
BlsI	GCNGC	2 cut(s)	60, 500
Bme1390I	CCNGG	2 cut(s)	203, 279
BmgBI	CACGTC	1 cut(s)	663
BmiI	GGNNCC	2 cut(s)	531, 648
BmrFI	CCNGG	2 cut(s)	203, 279
BmsI	GCATC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	85
BsaHI	GRCGYC	2 cut(s)	15, 441
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 208
Bse118I	RCCGGY	2 cut(s)	287, 424
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	356, 484
BseLI	CCNNNNNNNGG	2 cut(s)	202, 208
BsePI	GCGCGC	1 cut(s)	374
BseRI	GAGGAG	4 cut(s)	46, 136, 224, 506
Bsh1236I	CGCG	3 cut(s)	376, 404, 473
Bsh1285I	CGRYCG	2 cut(s)	115, 471
BshFI	GGCC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	424
BsiEI	CGRYCG	2 cut(s)	115, 471
BsiHKAI	GWGCWC	3 cut(s)	90, 187, 221
BsiSI	CCGG	3 cut(s)	279, 288, 425
BslI	CCNNNNNNNGG	2 cut(s)	202, 208
BsmAI	GTCTC	1 cut(s)	585
BsmBI	CGTCTC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	90, 187, 221
Bsp143I	GATC	5 cut(s)	112, 250, 255, 538, 678
BspANI	GGCC	1 cut(s)	201
BspFNI	CGCG	3 cut(s)	376, 404, 473
BspLI	GGNNCC	2 cut(s)	531, 648
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	2 cut(s)	258, 673
BspQI	GCTCTTC	1 cut(s)	209
BsrBI	CCGCTC	2 cut(s)	130, 498
BsrFI	RCCGGY	2 cut(s)	287, 424
BssAI	RCCGGY	2 cut(s)	287, 424
BssECI	CCNNGG	1 cut(s)	196
BssHII	GCGCGC	1 cut(s)	374
BssMI	GATC	5 cut(s)	112, 250, 255, 538, 678
BssNI	GRCGYC	2 cut(s)	15, 441
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	226, 272, 687
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	2 cut(s)	15, 441
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	90, 376
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	356, 484
BstFNI	CGCG	3 cut(s)	376, 404, 473
BstHHI	GCGC	3 cut(s)	376, 378, 404
BstKTI	GATC	5 cut(s)	115, 253, 258, 541, 681
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	5 cut(s)	112, 250, 255, 538, 678
BstMCI	CGRYCG	2 cut(s)	115, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 664
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	201, 277
BstSFI	CTRYAG	1 cut(s)	188
BstUI	CGCG	3 cut(s)	376, 404, 473
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	356, 484
Cac8I	GCNNGC	2 cut(s)	90, 376
CfoI	GCGC	3 cut(s)	376, 378, 404
Cfr10I	RCCGGY	2 cut(s)	287, 424
CseI	GACGC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	3 cut(s)	24, 463, 628
DpnI	GATC	5 cut(s)	114, 252, 257, 540, 680
DpnII	GATC	5 cut(s)	112, 250, 255, 538, 678
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	43, 516
Ecl136II	GAGCTC	2 cut(s)	185, 219
Eco24I	GRGCYC	2 cut(s)	187, 221
Eco53kI	GAGCTC	2 cut(s)	185, 219
Eco57I	CTGAAG	1 cut(s)	473
Eco72I	CACGTG	1 cut(s)	85
EcoICRI	GAGCTC	2 cut(s)	185, 219
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	187, 221
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	3 cut(s)	27, 466, 631
FaiI	YATR	7 cut(s)	25, 275, 353, 380, 416, 464, 629
FatI	CATG	3 cut(s)	23, 462, 627
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	59, 499
FokI	GGATG	2 cut(s)	343, 491
FriOI	GRGCYC	2 cut(s)	187, 221
Fsp4HI	GCNGC	2 cut(s)	59, 499
GlaI	GCGC	3 cut(s)	375, 377, 403
GluI	GCNGC	2 cut(s)	59, 499
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	3 cut(s)	279, 288, 425
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	3 cut(s)	376, 378, 404
Hin1I	GRCGYC	2 cut(s)	15, 441
Hin1II	CATG	3 cut(s)	27, 466, 631
Hin6I	GCGC	3 cut(s)	374, 376, 402
HinP1I	GCGC	3 cut(s)	374, 376, 402
HincII	GTYRAC	2 cut(s)	97, 169
HindII	GTYRAC	2 cut(s)	97, 169
HinfI	GANTC	4 cut(s)	231, 317, 337, 671
HpaII	CCGG	3 cut(s)	279, 288, 425
HphI	GGTGA	2 cut(s)	439, 549
Hpy166II	GTNNAC	2 cut(s)	97, 169
Hpy188I	TCNGA	9 cut(s)	40, 73, 230, 255, 361, 485, 543, 678, 683
Hpy188III	TCNNGA	3 cut(s)	304, 346, 445
Hpy8I	GTNNAC	2 cut(s)	97, 169
HpyAV	CCTTC	5 cut(s)	238, 392, 448, 573, 594
HpyCH4III	ACNGT	3 cut(s)	226, 272, 687
HpyCH4IV	ACGT	4 cut(s)	84, 366, 441, 662
HpyCH4V	TGCA	2 cut(s)	153, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 664
HpySE526I	ACGT	4 cut(s)	84, 366, 441, 662
Hsp92I	GRCGYC	2 cut(s)	15, 441
Hsp92II	CATG	3 cut(s)	27, 466, 631
HspAI	GCGC	3 cut(s)	374, 376, 402
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	112, 250, 255, 538, 678
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	3 cut(s)	224, 529, 652
LpnPI	CCDG	7 cut(s)	163, 188, 215, 292, 301, 370, 438
LweI	GCATC	1 cut(s)	537
MaeII	ACGT	4 cut(s)	84, 366, 441, 662
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	5 cut(s)	114, 252, 257, 540, 680
MbiI	CCGCTC	2 cut(s)	130, 498
MboI	GATC	5 cut(s)	112, 250, 255, 538, 678
MboII	GAAGA	5 cut(s)	86, 189, 226, 312, 407
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	90, 187, 221
MluCI	AATT	1 cut(s)	296
MmeI	TCCRAC	4 cut(s)	18, 208, 463, 706
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	3 cut(s)	279, 288, 425
MspR9I	CCNGG	2 cut(s)	203, 279
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	3 cut(s)	376, 404, 473
MwoI	GCNNNNNNNGC	2 cut(s)	529, 664
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	112, 250, 255, 538, 678
NlaIII	CATG	3 cut(s)	27, 466, 631
NlaIV	GGNNCC	2 cut(s)	531, 648
NmeAIII	GCCGAG	2 cut(s)	177, 623
NmuCI	GTSAC	1 cut(s)	157
PauI	GCGCGC	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	8 cut(s)	90, 96, 105, 204, 584, 596, 650, 659
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	4 cut(s)	231, 317, 337, 671
PinAI	ACCGGT	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	60, 500
Ple19I	CGATCG	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	85
PmlI	CACGTG	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	85
Psp124BI	GAGCTC	2 cut(s)	187, 221
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	201
PspCI	CACGTG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	531, 648
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	250
PteI	GCGCGC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	115
SacI	GAGCTC	2 cut(s)	187, 221
SalI	GTCGAC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	209
SatI	GCNGC	2 cut(s)	59, 499
Sau3AI	GATC	5 cut(s)	112, 250, 255, 538, 678
ScrFI	CCNGG	2 cut(s)	203, 279
SduI	GDGCHC	3 cut(s)	90, 187, 221
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	188
SgrDI	CGTCGACG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	296
SstI	GAGCTC	2 cut(s)	187, 221
StyD4I	CCNGG	2 cut(s)	201, 277
TaaI	ACNGT	3 cut(s)	226, 272, 687
TaiI	ACGT	4 cut(s)	87, 369, 444, 665
TaqI	TCGA	5 cut(s)	48, 96, 111, 126, 234
TasI	AATT	1 cut(s)	296
TauI	GCSGC	2 cut(s)	61, 501
TfiI	GAWTC	4 cut(s)	231, 317, 337, 671
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	12, 403, 524
TspGWI	ACGGA	2 cut(s)	278, 606
XagI	CCTNNNNNAGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.