Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Forward (+)

32596799 .. 32598262

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCAGGACCGGTGTCGTTTCGTGGCGGAGGAGGTCGGAGAAGCTGGAAGGTTTGGATCTCTCCAGTTCCGAAGAAGCTCACGTCCTCGCCGTCGATGACAGCCTCGTCGATCGCAAGGTCATTGAGCGCTTGCTTAGAATCTCCTCTTGCAAAGTGACCGCTGTGGACAGTGGTATGAGAGCTCTGCAATTCTTAGGTTTGGACGAGGAGAAGAGCACCTCAGTTGGTTTTGATGGATTGAAAGTGGATCTGATTATCACTGATTACTGCATGCCTGGTATGACCGGGTACGAATTGCTCAAGAAAATCAAGGAATCCTCGACTTTTAAAGAGATTCCGGTGGTGATTATGTCGTCTGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGAGCAGAAGATTTCATAGTGAAGCCGGTGAAGTTATCGGACGTGAAAAGGCTTAAAGATTTCATGATGACGAAAGACGTGGTTGCCGGAGGAGTAGAAGAGAGTGGGATCAACAAGAGAAAGCTAAGAGAACCTTCACCTTCCGATGAGCCTCCTTCTCCGCCGTCAATTTTACCGTCATCACCAACGTCAGCCCTCTCATCATCGTCGCCGTCACCATCACCGTCACCGCCTCTTTCAACATCGTCCTCGTTCTCAGCTCCATCGTCGCCCACGTCCCTTGATTCCCCAATCACACGGCTCAAAATGACCAACACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

241

Amino Acids

26.02

Weight (kDa)

5.31

Isoelectric Point (pI)

75.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	29 - 148	2.1e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccII	CGCG	1 cut(s)	376
AciI	CCGC	4 cut(s)	28, 162, 560, 629
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	3 cut(s)	66, 258, 515
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	293
AfeI	AGCGCT	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	244, 639
AjiI	CACGTC	4 cut(s)	85, 442, 478, 675
AjnI	CCWGG	2 cut(s)	5, 277
AluBI	AGCT	5 cut(s)	46, 80, 185, 523, 659
AluI	AGCT	5 cut(s)	46, 80, 185, 523, 659
Alw21I	GWGCWC	2 cut(s)	187, 221
AlwI	GGATC	3 cut(s)	66, 258, 515
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	1 cut(s)	3
AsiGI	ACCGGT	1 cut(s)	11
AspLEI	GCGC	3 cut(s)	132, 376, 378
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	7 cut(s)	358, 439, 528, 573, 606, 612, 618
AvaII	GGWCC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	2 cut(s)	187, 221
BccI	CCATC	3 cut(s)	230, 625, 670
BceAI	ACGGC	4 cut(s)	77, 547, 595, 713
BciT130I	CCWGG	2 cut(s)	7, 279
BcnI	CCSGG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	7, 279, 289
Bme18I	GGWCC	1 cut(s)	9
BmgBI	CACGTC	4 cut(s)	85, 442, 478, 675
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	7, 279, 289
BoxI	GACNNNNGTC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	289
BsaWI	WCCGGW	2 cut(s)	11, 340
Bse118I	RCCGGY	2 cut(s)	11, 424
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	7, 279
BseMII	CTCAG	3 cut(s)	237, 351, 669
BseNI	ACTGG	1 cut(s)	66
BsePI	GCGCGC	1 cut(s)	374
BseRI	GAGGAG	4 cut(s)	46, 136, 224, 504
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	187, 221
BsiSI	CCGG	5 cut(s)	12, 288, 341, 425, 486
BslFI	GGGAC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	187, 221
Bsp143I	GATC	4 cut(s)	58, 112, 250, 507
BspACI	CCGC	4 cut(s)	28, 162, 560, 629
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	236, 352, 668
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	462
BspPI	GGATC	3 cut(s)	66, 258, 515
BspQI	GCTCTTC	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	11, 424
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	11, 424
BssHII	GCGCGC	1 cut(s)	374
BssMI	GATC	4 cut(s)	58, 112, 250, 507
Bst2UI	CCWGG	2 cut(s)	7, 279
Bst4CI	ACNGT	3 cut(s)	173, 576, 624
Bst6I	CTCTTC	2 cut(s)	209, 492
BstC8I	GCNNGC	3 cut(s)	134, 275, 376
BstDEI	CTNAG	6 cut(s)	137, 196, 223, 360, 524, 655
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	3 cut(s)	132, 376, 378
BstKTI	GATC	4 cut(s)	61, 115, 253, 510
BstMBI	GATC	4 cut(s)	58, 112, 250, 507
BstMCI	CGRYCG	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	7, 279
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	3 cut(s)	5, 277, 287
BstUI	CGCG	1 cut(s)	376
BstX2I	RGATCY	2 cut(s)	58, 250
BstYI	RGATCY	2 cut(s)	58, 250
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	4 cut(s)	85, 442, 478, 675
BtsIMutI	CAGTG	3 cut(s)	178, 261, 714
Cac8I	GCNNGC	3 cut(s)	134, 275, 376
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	3 cut(s)	132, 376, 378
Cfr10I	RCCGGY	2 cut(s)	11, 424
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	292
CspAI	ACCGGT	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	2 cut(s)	274, 463
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	6 cut(s)	137, 196, 223, 360, 524, 655
DpnI	GATC	4 cut(s)	60, 114, 252, 509
DpnII	GATC	4 cut(s)	58, 112, 250, 507
DraI	TTTAAA	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	209, 492
EarI	CTCTTC	2 cut(s)	209, 492
EciI	GGCGGA	2 cut(s)	43, 549
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	5, 277
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	2 cut(s)	277, 466
FaiI	YATR	7 cut(s)	179, 275, 284, 353, 380, 416, 464
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	273, 462
FriOI	GRGCYC	1 cut(s)	187
GlaI	GCGC	3 cut(s)	131, 375, 377
GsuI	CTGGAG	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	12, 288, 341, 425, 486
HhaI	GCGC	3 cut(s)	132, 376, 378
Hin1II	CATG	2 cut(s)	277, 466
Hin6I	GCGC	3 cut(s)	130, 374, 376
HinP1I	GCGC	3 cut(s)	130, 374, 376
HinfI	GANTC	4 cut(s)	141, 317, 337, 683
HpaII	CCGG	5 cut(s)	12, 288, 341, 425, 486
HphI	GGTGA	7 cut(s)	358, 439, 528, 573, 606, 612, 618
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	6 cut(s)	40, 73, 255, 361, 439, 544
Hpy188III	TCNNGA	2 cut(s)	304, 463
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	4 cut(s)	98, 113, 610, 670
HpyAV	CCTTC	5 cut(s)	44, 392, 543, 549, 564
HpyCH4III	ACNGT	3 cut(s)	173, 576, 624
HpyCH4IV	ACGT	6 cut(s)	84, 366, 441, 477, 587, 674
HpyCH4V	TGCA	3 cut(s)	153, 190, 273
HpyF3I	CTNAG	6 cut(s)	137, 196, 223, 360, 524, 655
HpySE526I	ACGT	6 cut(s)	84, 366, 441, 477, 587, 674
Hsp92II	CATG	2 cut(s)	277, 466
HspAI	GCGC	3 cut(s)	130, 374, 376
Kzo9I	GATC	4 cut(s)	58, 112, 250, 507
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	401, 664
MaeII	ACGT	6 cut(s)	84, 366, 441, 477, 587, 674
MaeIII	GTNAC	3 cut(s)	157, 612, 624
MalI	GATC	4 cut(s)	60, 114, 252, 509
MboI	GATC	4 cut(s)	58, 112, 250, 507
MboII	GAAGA	5 cut(s)	86, 226, 407, 419, 509
MflI	RGATCY	2 cut(s)	58, 250
MhlI	GDGCHC	2 cut(s)	187, 221
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	191, 296, 567
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	330, 453
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	5 cut(s)	12, 288, 341, 425, 486
MspR9I	CCNGG	3 cut(s)	7, 279, 289
MvaI	CCWGG	2 cut(s)	7, 279
MvnI	CGCG	1 cut(s)	376
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	4 cut(s)	58, 112, 250, 507
NlaIII	CATG	2 cut(s)	277, 466
NmuCI	GTSAC	3 cut(s)	157, 612, 624
NspI	RCATGY	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	277
PagI	TCATGA	1 cut(s)	462
PauI	GCGCGC	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 671
PfeI	GAWTC	4 cut(s)	141, 317, 337, 683
PinAI	ACCGGT	1 cut(s)	11
Ple19I	CGATCG	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	5, 277
PspGI	CCWGG	2 cut(s)	5, 277
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	58, 250
PteI	GCGCGC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	330, 453
Sau3AI	GATC	4 cut(s)	58, 112, 250, 507
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	3 cut(s)	7, 279, 289
SduI	GDGCHC	2 cut(s)	187, 221
SinI	GGWCC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	191, 296, 567
SsiI	CCGC	4 cut(s)	28, 162, 560, 629
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	5, 277, 287
TaaI	ACNGT	3 cut(s)	173, 576, 624
TaiI	ACGT	6 cut(s)	87, 369, 444, 480, 590, 677
TaqI	TCGA	3 cut(s)	96, 111, 323
TasI	AATT	3 cut(s)	191, 296, 567
TfiI	GAWTC	4 cut(s)	141, 317, 337, 683
Tru1I	TTAA	2 cut(s)	330, 453
Tru9I	TTAA	2 cut(s)	330, 453
TscAI	CASTG	3 cut(s)	178, 268, 721
TseFI	GTSAC	3 cut(s)	157, 612, 624
Tsp45I	GTSAC	3 cut(s)	157, 612, 624
TspDTI	ATGAA	2 cut(s)	403, 451
TspRI	CASTG	3 cut(s)	178, 268, 721
VpaK11BI	GGWCC	1 cut(s)	9
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.