Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Forward (+)

63096987 .. 63099332

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG424500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGAGCTCTGCAATTCCTAGGTTTGGACGAGGAGAAGAGCACCTCGGTCGGTTTTGATGGCTTGAAGGTGGATCTGATTATCACGGATTACTGCATGCCTGGTATGACCGGATATGAACTGCTAAAGAAAATCAAGGAATCCACGACTTTTAAAGAGATTCCGGTTGTGATAATGTCCTCTGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGGGCAGAAGATTTCATAGTGAAGCCGGTGAAGTTATCGGACGTGAAAAGGCTTAAGGATTACATGACAAAAGACGTCGTCGCCGGAGGAGTAGAAGAGAGTGGGATCAACAAGAGAAAGCTACGAGAACCGTCCGATCAGCCACCGTCTCCGCCGTCAATTTTACCGTCATCCCCAACGTCAGCCCTATCATCACCTTCACCTTCACCTTCACCTTCACCGTCACCGTCACCGTCACCGTCACCATCACCGCCGCTTTCATCGTCGTCCTCGTTCTCAGCTCCATCGTCTCCCACGTCGCTTGACTCTCCATATCACACGGCTCAAAATGACCAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

187

Amino Acids

20.06

Weight (kDa)

5.09

Isoelectric Point (pI)

95.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	22 - 89	3e-16	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	374, 473, 476
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	2 cut(s)	81, 335
AcyI	GRCGYC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	2 cut(s)	265, 519
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	3 cut(s)	8, 343, 503
AluI	AGCT	3 cut(s)	8, 343, 503
Alw21I	GWGCWC	2 cut(s)	10, 44
Alw26I	GTCTC	2 cut(s)	375, 516
AlwI	GGATC	2 cut(s)	81, 335
AspA2I	CCTAGG	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	199, 201
AvrII	CCTAGG	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	10, 44
BccI	CCATC	3 cut(s)	53, 475, 514
BceAI	ACGGC	2 cut(s)	361, 558
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	375, 516
BfaI	CTAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	476
BlnI	CCTAGG	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	102
BmgBI	CACGTC	2 cut(s)	265, 519
BmrFI	CCNGG	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	19, 45
BsaWI	WCCGGW	2 cut(s)	110, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	19, 45
BseGI	GGATG	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	174, 513
BsePI	GCGCGC	1 cut(s)	197
BseRI	GAGGAG	2 cut(s)	47, 324
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	10, 44
BsiSI	CCGG	4 cut(s)	111, 164, 248, 306
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	375, 516
BsmBI	CGTCTC	2 cut(s)	375, 516
Bsp1286I	GDGCHC	2 cut(s)	10, 44
Bsp143I	GATC	3 cut(s)	73, 327, 358
BspACI	CCGC	3 cut(s)	374, 473, 476
BspCNI	CTCAG	2 cut(s)	175, 512
BspFNI	CGCG	1 cut(s)	199
BspPI	GGATC	2 cut(s)	81, 335
BspQI	GCTCTTC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	19, 45
BssHII	GCGCGC	1 cut(s)	197
BssMI	GATC	3 cut(s)	73, 327, 358
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	7 cut(s)	354, 369, 390, 444, 450, 456, 462
Bst6I	CTCTTC	2 cut(s)	32, 312
BstACI	GRCGYC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	98, 199
BstDEI	CTNAG	2 cut(s)	183, 499
BstF5I	GGATG	1 cut(s)	392
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	199, 201
BstKTI	GATC	3 cut(s)	76, 330, 361
BstMAI	GTCTC	2 cut(s)	375, 516
BstMBI	GATC	3 cut(s)	73, 327, 358
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtrI	CACGTC	2 cut(s)	265, 519
BtsCI	GGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	98, 199
CfoI	GCGC	2 cut(s)	199, 201
Cfr10I	RCCGGY	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	2 cut(s)	97, 286
CviJI	RGCY	9 cut(s)	8, 63, 247, 274, 343, 364, 407, 503, 545
CviKI_1	RGCY	9 cut(s)	8, 63, 247, 274, 343, 364, 407, 503, 545
DdeI	CTNAG	2 cut(s)	183, 499
DpnI	GATC	3 cut(s)	75, 329, 360
DpnII	GATC	3 cut(s)	73, 327, 358
DraI	TTTAAA	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	32, 312
EarI	CTCTTC	2 cut(s)	32, 312
EciI	GGCGGA	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	2 cut(s)	375, 516
FaeI	CATG	2 cut(s)	100, 289
FaiI	YATR	7 cut(s)	98, 107, 117, 203, 239, 287, 535
FatI	CATG	2 cut(s)	96, 285
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	2 cut(s)	198, 200
GluI	GCNGC	1 cut(s)	476
HapII	CCGG	4 cut(s)	111, 164, 248, 306
HhaI	GCGC	2 cut(s)	199, 201
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	100, 289
Hin6I	GCGC	2 cut(s)	197, 199
HinP1I	GCGC	2 cut(s)	197, 199
HinfI	GANTC	3 cut(s)	140, 160, 527
HpaII	CCGG	4 cut(s)	111, 164, 248, 306
Hpy188I	TCNGA	4 cut(s)	78, 184, 262, 358
Hpy99I	CGWCG	4 cut(s)	302, 305, 490, 523
HpyAV	CCTTC	6 cut(s)	61, 215, 429, 435, 441, 447
HpyCH4III	ACNGT	7 cut(s)	354, 369, 390, 444, 450, 456, 462
HpyCH4IV	ACGT	5 cut(s)	189, 264, 297, 401, 518
HpyCH4V	TGCA	2 cut(s)	13, 96
HpyF3I	CTNAG	2 cut(s)	183, 499
HpySE526I	ACGT	5 cut(s)	189, 264, 297, 401, 518
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	100, 289
HspAI	GCGC	2 cut(s)	197, 199
Kzo9I	GATC	3 cut(s)	73, 327, 358
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	7 cut(s)	87, 114, 124, 177, 193, 261, 319
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	5 cut(s)	189, 264, 297, 401, 518
MaeIII	GTNAC	4 cut(s)	444, 450, 456, 462
MalI	GATC	3 cut(s)	75, 329, 360
MboI	GATC	3 cut(s)	73, 327, 358
MboII	GAAGA	4 cut(s)	49, 230, 242, 329
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	10, 44
MluCI	AATT	2 cut(s)	14, 381
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	5 cut(s)	25, 55, 190, 302, 502
MseI	TTAA	2 cut(s)	153, 276
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	4 cut(s)	111, 164, 248, 306
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	199
NdeII	GATC	3 cut(s)	73, 327, 358
NlaIII	CATG	2 cut(s)	100, 289
NmuCI	GTSAC	4 cut(s)	444, 450, 456, 462
NspI	RCATGY	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	100
PauI	GCGCGC	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	491, 515
PfeI	GAWTC	2 cut(s)	140, 160
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	299
PteI	GCGCGC	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	153, 276
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	3 cut(s)	73, 327, 358
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	10, 44
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	2 cut(s)	14, 381
SsiI	CCGC	3 cut(s)	374, 473, 476
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	7 cut(s)	354, 369, 390, 444, 450, 456, 462
TaiI	ACGT	5 cut(s)	192, 267, 300, 404, 521
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	14, 381
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	2 cut(s)	140, 160
Tru1I	TTAA	2 cut(s)	153, 276
Tru9I	TTAA	2 cut(s)	153, 276
TseFI	GTSAC	4 cut(s)	444, 450, 456, 462
Tsp45I	GTSAC	4 cut(s)	444, 450, 456, 462
TspDTI	ATGAA	3 cut(s)	132, 226, 471
TspGWI	ACGGA	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	275
XceI	RCATGY	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.