Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

4886058 .. 4886622

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCCGGAATGACCGGCTACGAATTGCTCAAGAAAATCAAAGAATCTTCCACATTCAAAGAGATTCCCGTCGTGATTATGTCATCCGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGCGCGGAGGACTTCATAGTGAAACCGGTGAAGTTAGCTGACGTCAAGAGGCTGAAGGATTACATGACGACCGCGAGGGATGTCGGAGTGGAGGAGAGCGGCGGAGGAATGAACAAGAGAAAGCTACGGGAGCCGTGTGATCTGATGATGCCCACATCACCGCCTTCCATTTTACCATCGTCTCCTTCGTCGTCCTTATCGTCGCCGTCTAAATCTCCGTCGCCTCCTATGTCATCGTCGTTCTCGGCTCCATCGTCGCCCACGTCGCTTGATTCTCCGATCCGACGGTTCAAAATGACCAACGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

146

Amino Acids

15.76

Weight (kDa)

8.56

Isoelectric Point (pI)

92.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	225
AccII	CGCG	3 cut(s)	103, 131, 200
AciI	CCGC	5 cut(s)	131, 198, 225, 228, 287
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	58, 418
AjiI	CACGTC	1 cut(s)	390
AluBI	AGCT	2 cut(s)	164, 250
AluI	AGCT	2 cut(s)	164, 250
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	400
AsiGI	ACCGGT	1 cut(s)	151
AspLEI	GCGC	3 cut(s)	103, 105, 131
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	166, 276
BccI	CCATC	2 cut(s)	310, 385
BceAI	ACGGC	2 cut(s)	244, 316
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	312
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	258, 375
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	151
Bse118I	RCCGGY	2 cut(s)	14, 151
BseGI	GGATG	2 cut(s)	83, 211
BsePI	GCGCGC	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	233
Bsh1236I	CGCG	3 cut(s)	103, 131, 200
Bsh1285I	CGRYCG	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	6, 15, 152
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	265, 405
BspACI	CCGC	5 cut(s)	131, 198, 225, 228, 287
BspFNI	CGCG	3 cut(s)	103, 131, 200
BspLI	GGNNCC	2 cut(s)	258, 375
BspPI	GGATC	1 cut(s)	400
BsrBI	CCGCTC	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	14, 151
BssAI	RCCGGY	2 cut(s)	14, 151
BssHII	GCGCGC	1 cut(s)	101
BssMI	GATC	2 cut(s)	265, 405
BssNI	GRCGYC	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	83, 211
BstFNI	CGCG	3 cut(s)	103, 131, 200
BstHHI	GCGC	3 cut(s)	103, 105, 131
BstKTI	GATC	2 cut(s)	268, 408
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	2 cut(s)	265, 405
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 391
BstSCI	CCNGG	1 cut(s)	4
BstUI	CGCG	3 cut(s)	103, 131, 200
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	83, 211
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	3 cut(s)	103, 105, 131
Cfr10I	RCCGGY	2 cut(s)	14, 151
CspAI	ACCGGT	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	18, 164, 178, 250, 259, 374
CviKI_1	RGCY	6 cut(s)	18, 164, 178, 250, 259, 374
DpnI	GATC	2 cut(s)	267, 407
DpnII	GATC	2 cut(s)	265, 405
EciI	GGCGGA	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	1 cut(s)	193
FaiI	YATR	5 cut(s)	80, 107, 143, 191, 356
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	70, 218
Fsp4HI	GCNGC	1 cut(s)	226
GlaI	GCGC	3 cut(s)	102, 104, 130
GluI	GCNGC	1 cut(s)	226
HapII	CCGG	3 cut(s)	6, 15, 152
HhaI	GCGC	3 cut(s)	103, 105, 131
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	3 cut(s)	101, 103, 129
HinP1I	GCGC	3 cut(s)	101, 103, 129
HinfI	GANTC	3 cut(s)	44, 64, 398
HpaII	CCGG	3 cut(s)	6, 15, 152
HphI	GGTGA	2 cut(s)	166, 276
Hpy188I	TCNGA	5 cut(s)	88, 212, 270, 405, 410
Hpy188III	TCNNGA	3 cut(s)	31, 73, 172
Hpy99I	CGWCG	8 cut(s)	74, 319, 331, 349, 367, 385, 394, 414
HpyAV	CCTTC	4 cut(s)	119, 175, 300, 321
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	3 cut(s)	93, 168, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 391
HpySE526I	ACGT	3 cut(s)	93, 168, 389
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	3 cut(s)	101, 103, 129
Kzo9I	GATC	2 cut(s)	265, 405
LmnI	GCTCC	2 cut(s)	256, 379
LpnPI	CCDG	4 cut(s)	19, 28, 97, 165
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	3 cut(s)	93, 168, 389
MalI	GATC	2 cut(s)	267, 407
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	2 cut(s)	265, 405
MboII	GAAGA	2 cut(s)	39, 134
MluCI	AATT	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	190, 433
MnlI	CCTC	6 cut(s)	127, 168, 195, 211, 224, 360
MspI	CCGG	3 cut(s)	6, 15, 152
MspR9I	CCNGG	1 cut(s)	6
MvnI	CGCG	3 cut(s)	103, 131, 200
MwoI	GCNNNNNNNGC	2 cut(s)	256, 391
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	265, 405
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	258, 375
NmeAIII	GCCGAG	1 cut(s)	350
PauI	GCGCGC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	4 cut(s)	311, 323, 377, 386
PfeI	GAWTC	3 cut(s)	44, 64, 398
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	227
Psp1406I	AACGTT	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	258, 375
PteI	GCGCGC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	265, 405
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	6 cut(s)	96, 116, 166, 171, 252, 392
SfaNI	GCATC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	5 cut(s)	131, 198, 225, 228, 287
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	3 cut(s)	96, 171, 392
TasI	AATT	1 cut(s)	23
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	44, 64, 398
TspDTI	ATGAA	2 cut(s)	130, 251
TspGWI	ACGGA	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.