Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Forward (+)

27026187 .. 27027940

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCAGGAGCGGCGTCGTTTCGTGGCGGAGGAGGTCGGAGAAGCTCGACGGGTTCGATATGTCGCCAATGAACTCCGAAGAAGCTCACGTCCTCGCCGTCGATGACAGCCTCGTCGACCGCAAGGTCATTGAGCGCTTGCTTAGAATTTCTTCTTGCAAAGTGACGGCTGTGGATAGTGGAAGGAGAGCTCTGCAATTCCTTGGCTTGGACGACGACAAGAGCTCCTCCGTCGGATTCGATGGCTTGAAGGTGGATCTGATTATCACTGACTACTGTATGCCTGGCATGACCGGGTACGAATTGCTCAAGAAAATCAAGGAATCTTCAGCTCTCAAAGAGATTCCCGTTGTGATTATGTCATCTGAGAACGTTTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGCGCAGAAGACTTCATAGTGAAACCGGTGAAGTTATCGGACGTGAAGAGGCTCAAGGACTACATGACGAGAGAGGCCGGACTGGAAGGGAGTGGGATGAAGAAGAGAAAGCTACGCGAGCCTTGTGATCTGCCTTCCTCACCACCGTCCATTCTACCATCGTCACCCTCGTCCTCCTTATCGTCACCGTCGAAATCTCCGTCGCCTCCTCTGTCATCGTCGTTCTCGGCTCCCTCGTCGCCGACGTCGCTTGATTCCCCAATCCGACGGCTCAAAATGACCAACACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

233

Amino Acids

25.4

Weight (kDa)

8.29

Isoelectric Point (pI)

81.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	113, 125
AatII	GACGTC	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	382, 522
AciI	CCGC	3 cut(s)	12, 28, 121
AclI	AACGTT	1 cut(s)	372
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	2 cut(s)	15, 650
AfaI	GTAC	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	250
AjiI	CACGTC	2 cut(s)	91, 448
AjnI	CCWGG	2 cut(s)	5, 283
AluBI	AGCT	6 cut(s)	46, 86, 191, 225, 332, 517
AluI	AGCT	6 cut(s)	46, 86, 191, 225, 332, 517
Alw21I	GWGCWC	2 cut(s)	193, 227
AlwI	GGATC	1 cut(s)	264
Aor51HI	AGCGCT	1 cut(s)	137
AoxI	GGCC	2 cut(s)	3, 480
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AsiGI	ACCGGT	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	151
AspLEI	GCGC	4 cut(s)	138, 382, 384, 410
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	4 cut(s)	445, 537, 561, 582
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	193, 227
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	193, 227
BccI	CCATC	2 cut(s)	236, 571
BceAI	ACGGC	3 cut(s)	83, 183, 689
BciT130I	CCWGG	2 cut(s)	7, 285
BcnI	CCSGG	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	139
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	3 cut(s)	7, 285, 295
BmgBI	CACGTC	2 cut(s)	91, 448
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	3 cut(s)	7, 285, 295
BpiI	GAAGAC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	293, 443
BpuMI	CCSGG	1 cut(s)	295
BsaHI	GRCGYC	2 cut(s)	15, 650
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	7, 285
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	492
BsePI	GCGCGC	1 cut(s)	380
BseRI	GAGGAG	3 cut(s)	46, 217, 603
Bsh1236I	CGCG	2 cut(s)	382, 522
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	5, 482
BshTI	ACCGGT	1 cut(s)	430
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	193, 227
BsiSI	CCGG	3 cut(s)	294, 431, 483
BslI	CCNNNNNNNGG	1 cut(s)	208
BsnI	GGCC	2 cut(s)	5, 482
Bsp1286I	GDGCHC	2 cut(s)	193, 227
Bsp143I	GATC	2 cut(s)	256, 532
BspACI	CCGC	3 cut(s)	12, 28, 121
BspANI	GGCC	2 cut(s)	5, 482
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	382, 522
BspLI	GGNNCC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	202
BssHII	GCGCGC	1 cut(s)	380
BssMI	GATC	2 cut(s)	256, 532
BssNI	GRCGYC	2 cut(s)	15, 650
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	7, 285
Bst4CI	ACNGT	3 cut(s)	278, 552, 594
Bst6I	CTCTTC	2 cut(s)	446, 503
BstACI	GRCGYC	2 cut(s)	15, 650
BstC8I	GCNNGC	3 cut(s)	140, 382, 524
BstDEI	CTNAG	2 cut(s)	143, 366
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	2 cut(s)	382, 522
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	4 cut(s)	138, 382, 384, 410
BstKTI	GATC	2 cut(s)	259, 535
BstMBI	GATC	2 cut(s)	256, 532
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 652
BstNI	CCWGG	2 cut(s)	7, 285
BstSCI	CCNGG	3 cut(s)	5, 283, 293
BstUI	CGCG	2 cut(s)	382, 522
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	5, 482
BtrI	CACGTC	2 cut(s)	91, 448
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	267, 690
Cac8I	GCNNGC	3 cut(s)	140, 382, 524
CfoI	GCGC	4 cut(s)	138, 382, 384, 410
Cfr10I	RCCGGY	1 cut(s)	430
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	2 cut(s)	289, 469
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	143, 366
DpnI	GATC	2 cut(s)	258, 534
DpnII	GATC	2 cut(s)	256, 532
DrdI	GACNNNNNNGTC	2 cut(s)	113, 125
DseDI	GACNNNNNNGTC	2 cut(s)	113, 125
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	446, 503
EarI	CTCTTC	2 cut(s)	446, 503
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	2 cut(s)	191, 225
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	193, 227
Eco47III	AGCGCT	1 cut(s)	137
Eco53kI	GAGCTC	2 cut(s)	191, 225
Eco57I	CTGAAG	1 cut(s)	312
EcoICRI	GAGCTC	2 cut(s)	191, 225
EcoRII	CCWGG	2 cut(s)	5, 283
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	193, 227
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	292, 472
FaiI	YATR	7 cut(s)	62, 281, 290, 359, 386, 422, 470
FatI	CATG	2 cut(s)	288, 468
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	514
FriOI	GRGCYC	2 cut(s)	193, 227
Fsp4HI	GCNGC	1 cut(s)	13
GlaI	GCGC	4 cut(s)	137, 381, 383, 409
GluI	GCNGC	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	5, 482
HapII	CCGG	3 cut(s)	294, 431, 483
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	4 cut(s)	138, 382, 384, 410
Hin1I	GRCGYC	2 cut(s)	15, 650
Hin1II	CATG	2 cut(s)	292, 472
Hin6I	GCGC	4 cut(s)	136, 380, 382, 408
HinP1I	GCGC	4 cut(s)	136, 380, 382, 408
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	237, 323, 343, 659
HpaII	CCGG	3 cut(s)	294, 431, 483
HphI	GGTGA	4 cut(s)	445, 537, 561, 582
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	7 cut(s)	40, 79, 236, 261, 367, 445, 671
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	5 cut(s)	177, 244, 398, 485, 549
HpyCH4III	ACNGT	3 cut(s)	278, 552, 594
HpyCH4IV	ACGT	4 cut(s)	90, 372, 447, 650
HpyCH4V	TGCA	2 cut(s)	159, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 652
HpyF3I	CTNAG	2 cut(s)	143, 366
HpySE526I	ACGT	4 cut(s)	90, 372, 447, 650
Hsp92I	GRCGYC	2 cut(s)	15, 650
Hsp92II	CATG	2 cut(s)	292, 472
HspAI	GCGC	4 cut(s)	136, 380, 382, 408
Kzo9I	GATC	2 cut(s)	256, 532
LmnI	GCTCC	3 cut(s)	9, 230, 640
LpnPI	CCDG	8 cut(s)	19, 270, 297, 307, 376, 444, 473, 496
MaeII	ACGT	4 cut(s)	90, 372, 447, 650
MaeIII	GTNAC	3 cut(s)	163, 567, 588
MalI	GATC	2 cut(s)	258, 534
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	2 cut(s)	256, 532
MboII	GAAGA	8 cut(s)	92, 144, 318, 413, 425, 463, 517, 520
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	193, 227
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	147, 197, 302
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	18, 214, 694
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	294, 431, 483
MspR9I	CCNGG	3 cut(s)	7, 285, 295
MvaI	CCWGG	2 cut(s)	7, 285
MvnI	CGCG	2 cut(s)	382, 522
MwoI	GCNNNNNNNGC	2 cut(s)	523, 652
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	256, 532
NlaIII	CATG	2 cut(s)	292, 472
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	611
NmuCI	GTSAC	3 cut(s)	163, 567, 588
PauI	GCGCGC	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	7 cut(s)	54, 96, 572, 593, 602, 638, 647
PdmI	GAANNNNTTC	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	237, 323, 343, 659
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	14
Psp124BI	GAGCTC	2 cut(s)	193, 227
Psp1406I	AACGTT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	5, 283
PspGI	CCWGG	2 cut(s)	5, 283
PspN4I	GGNNCC	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	256
PteI	GCGCGC	1 cut(s)	380
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacI	GAGCTC	2 cut(s)	193, 227
SalI	GTCGAC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	2 cut(s)	256, 532
ScrFI	CCNGG	3 cut(s)	7, 285, 295
SduI	GDGCHC	2 cut(s)	193, 227
SmlI	CTYRAG	2 cut(s)	308, 458
SmoI	CTYRAG	2 cut(s)	308, 458
Sse9I	AATT	3 cut(s)	147, 197, 302
SsiI	CCGC	3 cut(s)	12, 28, 121
SstI	GAGCTC	2 cut(s)	193, 227
StyD4I	CCNGG	3 cut(s)	5, 283, 293
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	278, 552, 594
TaiI	ACGT	4 cut(s)	93, 375, 450, 653
TaqI	TCGA	6 cut(s)	48, 57, 102, 117, 240, 596
TasI	AATT	3 cut(s)	147, 197, 302
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	4 cut(s)	237, 323, 343, 659
TscAI	CASTG	2 cut(s)	274, 697
TseFI	GTSAC	3 cut(s)	163, 567, 588
Tsp45I	GTSAC	3 cut(s)	163, 567, 588
TspDTI	ATGAA	3 cut(s)	86, 409, 518
TspGWI	ACGGA	2 cut(s)	220, 594
TspRI	CASTG	2 cut(s)	274, 697
XapI	RAATTY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	151
ZraI	GACGTC	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.